ITB Meeting Schedule

Upcoming Speakers
Past Seminars
Organisation
Meeting Alumni

Upcoming Speakers

Predicted Date [*] Name Group Location
2023-10-10 König, Matthias (PI) Systems Biology of Liver
2023-10-17 Yalcin, Müge Systems Biology of Cancer
2023-10-24 Masserini, Stefano Theoretical Neuroscience
2023-10-31 Höper, Rune Metabolic Networks
2023-11-07 Bergerot, Clemence Collective Information Processing
2023-11-14 Kuokkanen, Paula Theoretical Neuroscience
2023-11-21 Schuppner, Rike-Benjamin System Administration
2023-11-28 Sevinchan, Yunus Collective Information Processing
2023-12-05 Schreiber, Susanne (PI) Computational Neurophysiology
2023-12-12 Astaburuaga, Rosario Systems Biology of Molecular Networks
2023-12-19 Govoni, Patrick Collective Information Processing
2024-01-02 Drangmeister, Moritz Computational Neurophysiology
2024-01-09 Komkova, Daria Metabolic Networks
2024-01-16 Pallasdies, Fabian Computational Neurophysiology
2024-01-23 Lecheval, Valentin Collective Information Processing
2024-01-30 Ananthasubramaniam, Bharath (PI) Rhythmic Living Systems
2024-02-06 Norton, Phillip Computational Neurophysiology
2024-02-13 Schmal, Christoph (PI) Computational Chronobiology
2024-02-20 Gowers, Robert Computational Neurophysiology
2024-02-27 Hurtado, Javier Marchena Systems Biology of Molecular Networks
2024-03-05 Mahraz, Behbood Computational Neurophysiology
2024-03-12 Steuer, Ralf (PI) Metabolic Networks
2024-03-19 Auer, Naomi Theoretical Neuroscience
2024-03-26 Niemeyer, Nelson Computational Neurophysiology
2024-04-02 Lemaire, Louisiane Computational Neurophysiology
2024-04-09 Schleimer, Jan-Hendrik Computational Neurophysiology
2024-04-16 Del Olmo, Marta Molecular and Cellular Evolution
2024-04-23 Karimian, Maryam Collective Information Processing
2024-04-30 Cano, Gaspar Theoretical Neuroscience
2024-05-07 Wilkins, Adams ITB
2024-05-14 Usatikova, Eleonora Molecular and Cellular Evolution
2024-05-21 Klinger, Bertram Systems Biology of Molecular Networks
2024-05-28 Grabe, Saskia Molecular and Cellular Evolution
2024-06-04 Bluethgen, Nils (PI) Systems Biology of Molecular Networks
2024-06-11 Pfeiffer, Paul Computational Neurophysiology
2024-06-18 Hammerstein, Peter (PI) Evolution of Organismic Systems
2024-06-25 Weerdmeester, Liz Computational Neurophysiology
2024-07-02 Romanczuk, Pawel (PI) Collective Information Processing
2024-07-09 Herzel, Hanspeter (PI) Molecular and Cellular Evolution
2024-07-16 Zheng, Yating Collective Information Processing
[*] Dates are predicted by skipping German holidays on Tuesdays in the python holidays package. Holiday breaks like over Christmas and local Berlin holidays are not accounted for and can result in changes of the final date of your presentation.

Past Seminars

Date Speaker Title Slides
2023-09-27 Zheng, Yating
Collective Information Processing
Collective shepherding
2023-09-19 Herzel, Hanspeter (PI)
Molecular and Cellular Evolution
My 40 years with oscillators
2023-09-12 Weerdmeester, Liz
Computational Neurophysiology
Fitting Recurrent Neural Networks to a database of electrophysiology recordings to prove the existence and characteristics of dynamical neuron types
2023-09-05 Hammerstein, Peter (PI)
Evolution of Organismic Systems
A BIOLOGICAL EMPLOYMENT MODEL OF REPRODUCTIVE INEQUALITY
2023-07-11 Pfeiffer, Paul
Computational Neurophysiology
Large scale analysis of neural excitability
2023-07-04 Bluethgen, Nils (PI)
Systems Biology of Molecular Networks
Network Reconstruction: Then and Now
2023-06-27 Grabe, Saskia
Molecular and Cellular Evolution
2023-06-20 Romanczuk, Pawel (PI)
Collective Information Processing
Social dilemmas of sociality due to beneficial and costly contagion
2023-06-13 Klinger, Bertram
Systems Biology of Molecular Networks
Mutagenesis screen to identify driver genes for AML in mice with ASXL1mut background
2023-05-23 Wilkins, Adams
ITB
Why are the brains of domesticated mammals smaller than their wild forebear strains?
2023-05-09 Del Olmo, Marta
Molecular and Cellular Evolution
Are circadian periods and amplitudes correlated? A new twist in the story
2023-05-02 Schleimer, Jan-Hendrik
Computational Neurophysiology
Fast flapping flyers II: Should we model the development of a central pattern generator in Drosophila?
2023-04-25 Lemaire, Louisiane
Computational Neurophysiology
Integrate-and-fire neuron with potassium dynamics capturing activity-mediated switches in firing regimes
2023-04-18 Niemeyer, Nelson
Computational Neurophysiology
Fast flapping fliers: Modelling the Drosophila wing motor system
2023-03-28 Auer, Naomi
Theoretical Neuroscience
Differences in population sparseness can explain different memory consolidation speeds
2023-03-07 Mahraz, Behbood
Computational Neurophysiology
Slow Rhythmic Dynamic Induced by Extracellular Potassium Concentration
2023-02-21 Gowers, Robert
Computational Neurophysiology
How neuronal morphology affects the network state via the excitability type
2023-02-07 Norton, Phillip
Computational Neurophysiology
Neural optimization: Understanding trade-offs with Pareto theory
2023-01-31 Ananthasubramaniam, Bharath (PI)
Rhythmic Living Systems
Cyclic Ordering with Feature Extraction (COFE) identifies circadian biomarkers from data without time labels
2023-01-24 Lauterback, Elvira
Health and Safety in the workplace
2023-01-17 Komkova, Daria
Metabolic Networks
Model reduction of genome-scale metabolic models for the development of stoichiometrically correct kinetic models
2023-01-10 Relógio, Angela (PI)
A career in academic research: time matters!
2022-12-13 Pallasdies, Fabian
Computational Neurophysiology
Studying computational models of jellyfish nervous systems regarding motor control, embodiment and evolution
2022-12-06 Gutu, Nica
How cells respond to DNA damage at single-cell level?
2022-11-29 Kwon, Gino
Systems Biology of Inflammation
Genomic profiling upon T-cell stimulation in Autoimmune disease
2022-11-22 Drangmeister, Moritz
Computational Neurophysiology
On the ground state statistics of a balanced network of homoclinic neurons in the bistable regime
2022-11-15 Astaburuaga, Rosario
Systems Biology of Molecular Networks
What determines the fate of HNSCC cells after radiation therapy?
2022-11-08 Petković, Marina
Differential expression of the circadian clock network correlates with tumor progression in gliomas
2022-11-01 Schmal, Christoph (PI)
Computational Chronobiology
The mammalian circadian clock: a network of coupled oscillators
2022-10-25 Mohsen Raoufi
Speed accuracy tradeoffs in spatial collective estimation: a swarm robotic implementation
2022-10-18 Schuppner, Rike-Benjamin
System Administration
Your way around the ITB infrastructure
2022-10-11 Kuokkanen, Paula
Theoretical Neuroscience
Inhibitory synaptic dynamics in the extracellular field potentials of the nucleus laminaris of the barn owl.
2022-09-27 Bartashevich, Palina
Collective anti-predator escape in fish schools
2022-09-13 Höper, Rune
Metabolic Networks
Flux Balance Analysis of the cyanobacterium Synechocystis sp. PCC 6803
2022-09-06 König, Matthias (PI)
Systems Biology of Liver
None
2022-07-12 Steuer, Ralf (PI)
Metabolic Networks
Green biotechnology and the fastest-growing cyanobacterium
2022-07-05 Gomez, Luis
Intermittent collective motion in sheep: temporal leaders and information flow
2022-06-28 Weerdmeester, Liz
Computational Neurophysiology
Design Principles of Environmentally Robust Pacemaker Driven Excitable Cells
2022-06-21 Hammerstein, Peter (PI)
Evolution of Organismic Systems
Evolution and the puzzle of cooperation
2022-06-07 Bluethgen, Nils (PI)
Systems Biology of Molecular Networks
None
2022-05-24 Herzel, Hanspeter (PI)
Molecular and Cellular Evolution
Why do we get up 90 min earlier if our clock runs 12 min faster?
2022-05-17 Peidli, Stefan
Not-so-single cell RNA-seq: cell-cell interactions from doublets
2022-05-10 Malhan, Deeksha
Transcriptome analysis of alternative splicing in clock disrupted cancer cells
2022-05-03 Del Olmo, Marta
Molecular and Cellular Evolution
Inter-layer and inter-individual variability of circadian gene expression in human skin
2022-04-26 Usatikova, Eleonora
Molecular and Cellular Evolution
Analysis of daily rhythmicity in activity of cancer-related pathways with a gene expression signature-based approach
2022-04-19 Grzegorzewski, Jan
The role of the CYP2D6 polymorphism on dextromethorphan pharmacokinetics: A physiological-based pharmacokinetics modeling approach.
2022-04-12 Fischer, Matthias
On tumoural growth and treatment under cellular dedifferentiation.
2022-04-05 Aboumanify, Ouda
2022-03-22 Klinger, Bertram
Systems Biology of Molecular Networks
Using tap-seq to infer gene regulatory networks - a start
2022-03-15 Cano, Gaspar
Theoretical Neuroscience
Memory replay and disinhibition mechanisms in sharp wave-ripples
2022-03-01 Grabe, Saskia
Molecular and Cellular Evolution
Synergies of multiple zeitgebers tune entrainment
2022-02-22 Schleimer, Jan-Hendrik
Computational Neurophysiology
Neuronal Excitability or Networks?
2022-02-15 Sell, Thomas
A look into phenotypic plasticity during colorectal cancer progression
2022-02-08 Niemeyer, Nelson
Computational Neurophysiology
Electrical synapses desynchronize the Drosophila wing motor network
2022-01-18 Mahraz, Behbood
Computational Neurophysiology
A PCA method for analysis of microelectrode array data on KCC2 cotransporter effect in the neuronal network level
2022-01-11 Auer, Naomi
Theoretical Neuroscience
Could differences in population sparseness explain different memory consolidation speeds?
2021-12-07 Hesse, Janina
Computational Neurophysiology
Chronotherapy in a dish: Modeling time-dependent toxicity of a cancer drug
2021-11-23 Norton, Phillip
Computational Neurophysiology
Cortical control of vocal turn taking in zebra finches
2021-11-16 Pallasdies, Fabian
Computational Neurophysiology
From Single Neurons to Behavior in Two Jellyfish Species
2021-11-09 Wilkins, Adams
ITB
Charles Darwin's Mystery Illness: Using 21st century biology to solve a 19th century medical 'cold case'
2021-11-02 Gomez, Luis
The Role Of Speed Adaptation In Collective Motion
2021-10-24 Schuppner, Rike-Benjamin
System Administration
If a computer crashes and no one is logged in to notice it, does IT make a sound? — Techsplaning the ITB infrastructure.
2021-10-17 Ananthasubramaniam, Bharath (PI)
Rhythmic Living Systems
Difference of significance is not significance of the difference
2021-10-12 Petković, Marina
Investigating tumor evolution using allele-specific copy-number profiles from multi-region data
2021-10-05 Schreiber, Susanne (PI)
Computational Neurophysiology
Action potential dynamics: how cellular properties matter for nervous system function
2021-09-28 Basti, Alireza
Systems Biology of Cancer
Core-clock genes regulate proliferation and migration in colorectal cancer cells: a reciprocal interplay with MACC1
2021-09-21 Astaburuaga, Rosario
Systems Biology of Molecular Networks
Complement activation induces excessive T cell cytotoxicity in severe COVID-19
2021-09-14 Yalcin, Müge
Systems Biology of Cancer
The role of circadian clock phenotype in cellular pathways associated with cancer and neurodegeneration
2021-09-07 Mohsen Raoufi
Speed-accuracy trade-off in spatial collective decision making
2021-08-24 Burt, Phillipp
Systems Biology of Inflammation
Data-driven modeling of T cell dynamics in acute and chronic inflammation
2021-06-22 Contreras, Susana
Computational Neurophysiology
Simplifying complicated neuronal models
2021-06-15 Kuokkanen, Paula
Theoretical Neuroscience
Predicting click-elicited single auditory unit contributions to EEG in the barn owl
2021-06-08 Thurley, Kevin (PI)
Systems Biology of Inflammation
Epigenetic auto-stabilization - evidence for a new network motif in the control of Th cell lineage identity.
2021-06-01 Schieferstein, Natalie
Approximating transient dynamics of hippocampal ripple oscillations in an inhibitory network model
2021-05-25 Poel, Winnie
Collective Information Processing
TBA
2021-05-18 Pfeiffer, Paul
Computational Neurophysiology
Capacitance clamp - artificial capacitance in biological neurons
2021-05-03 König, Matthias (PI)
Systems Biology of Liver
Physiologically based model of the indocyanine green based liver function tests
2021-04-27 Steuer, Ralf (PI)
Metabolic Networks
Eating the Sun: the path from single cell growth to productive ecosystems
2021-04-20 Gomez, Luis
Information spread enhanced by criticality in high-responsive groups of fish
2021-04-13 Weerdmeester, Liz
Computational Neurophysiology
Energy vs robustness: a trade-off?
2021-04-06 Schmal, Christoph (PI)
Computational Chronobiology
An Integrative Omics Approach Reveals Post-transcriptional Mechanisms Underlying Circadian Temperature Compensation
2021-03-30 Hammerstein, Peter (PI)
Evolution of Organismic Systems
A striking 'pandemic'
2021-03-16 Relógio, Angela (PI)
Circadian cancer metabolism.
2021-03-09 Brunner, Patrick
Systems Biology of Inflammation
Spatial modeling of inflammation
2021-03-02 Zhao, Yinong
Self-organization of self-propelled particles with alignment -- Contagion process influenced by the spatial structure
2021-02-23 Bluethgen, Nils (PI)
Systems Biology of Molecular Networks
Signalling and the organisation of the epithelium and epithelial tumours. Lessons learned from single cell studies.
2021-02-16 Peidli, Stefan
Temporal Single Cell Analysis with RNA velocity
2021-02-09 Kwon, Gino
Systems Biology of Inflammation
Dissecting the heterogeneity of single cell RNA expression.
2021-02-02 Malhan, Deeksha
Bone healing: cellular and molecular insight
2021-01-26 Del Olmo, Marta
Molecular and Cellular Evolution
Nonlinear phenomena in models of the circadian clock
2021-01-19 Fischer, Matthias
Maintaining and losing homoeostasis in hierarchical tissues
2021-01-12 Grzegorzewski, Jan
PK-DB: A Pharmacokinetics Database for Individualized and Stratified Computational Modelling
2020-12-15 Aboumanify, Ouda
Circadian genes and sports performance
2020-12-08 Klinger, Bertram
Systems Biology of Molecular Networks
Speed2
2020-12-01 Schleimer, Jan-Hendrik
Computational Neurophysiology
Understanding excitability-switches in one dimension too much
2020-11-24 Dorel, Mathurin
Systems Biology of Molecular Networks
Reverse engineering signalling networks in neuroblastoma cell lines
2020-11-17 Mahraz, Behbood
Computational Neurophysiology
KCC2 cotransporter plays a role in balancing potassium in the extracellular space of excitatory synapses
2020-11-10 Herzel, Hanspeter (PI)
Molecular and Cellular Evolution
GC content of the genome
2020-11-03 Gross, Torsten
Systems Biology of Molecular Networks
Is robustness of MAPK signalling a result of integral feedback control?
2020-10-27 Sell, Thomas
CyTOF
2020-10-20 Hesse, Janina
Computational Neurophysiology
Circadian genes and sports performance: Prediction of optimal training times
2020-06-24 Wilkins, Adams
ITB
In domesticating animals, what is the first step: getting reduced reactive aggression or reduced fear?
2020-06-17 Ananthasubramaniam, Bharath (PI)
Rhythmic Living Systems
Amplitude Effects Allow Short Jet Lags and Large Seasonal Phase Shifts in Minimal Clock Models
2020-06-09 Basti, Alireza
Systems Biology of Cancer
The role of circadian clock in colorectal cancer: insights from in vitro and in vivo approaches
2020-06-02 Yalcin, Müge
Systems Biology of Cancer
Meta-analysis of circadian rhythms in an in vitro model of colorectal cancer
2020-05-26 Astaburuaga, Rosario
Systems Biology of Molecular Networks
Signaling pathways governing cell fate decisions upon radiation
2020-05-19 Upadhyay, Abhishek
Molecular and Cellular Evolution
Modelling multiple random phosphorylations in Neurospora clock is not rocket science!
2020-05-23 Gustav, Geissler
Systems Biology of Inflammation
Systems Biology of Inflammation
2020-02-25 Schuppner, Rike-Benjamin
System Administration
ITB IT infrastructure & frequently asked questions
2020-02-18 Burt, Phillipp
Systems Biology of Inflammation
Data-driven modeling of T helper cell responses
2020-02-11 D'Albis, Tiziano
Theoretical Neuroscience
Recurrent amplification of grid-cell activity
2020-02-04 Contreras, Susana
Computational Neurophysiology
Effects of the extracellular (potassium) cocktail on neuronal activity
2020-01-28 Kuokkanen, Paula
Theoretical Neuroscience
From Single Cells to Far-Field Potentials in the Auditory Brainstem
2020-01-21 Thurley, Kevin (PI)
Systems Biology of Inflammation
Principles for circadian orchestration of metabolic pathways
2020-01-14 Schieferstein, Natalie
Mechanisms of ripple oscillations and their role in memory consolidation
2020-01-07 Rose, Pia
Computational Neurophysiology
The influence of sodium channel parameters on the cardiac action potential
2019-12-17 Poel, Winnie
Collective Information Processing
2019-12-10 Pfeiffer, Paul
Computational Neurophysiology
Capacitance clamp - artificial capacitance in biological neurons
2019-12-03 König, Matthias (PI)
Systems Biology of Liver
A reproducible and extensible model of whole-body glucose metabolism - A Progress report
2019-11-26 Steuer, Ralf (PI)
Metabolic Networks
None
2019-11-19 Raghavendra Gadagkar (PI)
Direct Fitness Options for Workers in the Indian Paper Wasp Ropalidia marginata
2019-11-12 Romanczuk, Pawel (PI)
Collective Information Processing
2019-11-05 Schmal, Christoph (PI)
Computational Chronobiology
Circadian entrainment across seasons: lessons from a red bread mold
2019-10-15 Reifenstein, Eric
Computational Neurophysiology
The benefit of phase precession for sequence learning
2019-10-08 Meisig, Johannes
Systems Biology of Molecular Networks
Using Slam-seq to characterize RNA processing rates globally.
2019-10-01 Bluethgen, Nils (PI)
Systems Biology of Molecular Networks
Dissecting Colon Cancer, Cell By Cell
2019-09-24 Relógio, Angela (PI)
A role for the circadian clock in metastasis: insights from a zebrafish model.
2019-09-17 Li, Yin
Systems Biology of Cancer
The bidirectional interplay between the circadian clock and the TGFβ/SMAD4 pathway modulates metastasis and drug response in pancreatic cancer.
2019-09-10 Del Olmo, Marta
Molecular and Cellular Evolution
Modelling Circadian Redox Oscillations
2019-09-03 El-Athman, Rukeia
Systems Biology of Cancer
A Landscape of Circadian and Ultradian Splicing Events in Mammalian Tissues
2019-07-09 Grzegorzewski, Jan
A Pharmacokinetics Database for Individualized and Stratified Computational Modelling
2019-07-02 Klinger, Bertram
Systems Biology of Molecular Networks
Mass-spec methods for phospho-protein detection
2019-06-25 Mahraz, Behbood
Computational Neurophysiology
Activity-Induced Changes in Ion Concentrations Switch Cellular Dynamics in Favor of the Brain's Rhythmic Activities (A Fast Slow Bifurcation Analysis)
2019-06-18 Herzel, Hanspeter (PI)
Molecular and Cellular Evolution
Nonlinear dynamics of the voice
2019-06-04 Gross, Torsten
Systems Biology of Molecular Networks
Robust network inference using response logic
2019-05-28 Clara Jongen
Research on Complex Systems
Context specific role of airports in global disease dynamics
2019-05-21 König, Matthias (PI)
Systems Biology of Liver
Reproducible research
2019-05-14 Sell, Thomas
Signalling cell by cell with mass cytometry
2019-05-07 Benary, Manuela
Systems Biology of Molecular Networks
Precision oncology using big data – How to predict relevant targets and therapies?
2019-04-30 Pett, Patrick
Molecular and Cellular Evolution
Defense tissue specific circadian clock
2019-04-23 Sojo, Victor
1+1=3: Membranes, proteins, and the intertwining branches of the Tree of Life
2019-04-16 Lauterbach, Elvira & Winkelhöfer Karin
Security information and instructions
2019-04-02 Schreiber, Susanne (PI)
Computational Neurophysiology
Synchronization with a new type of spike
2019-03-24 Carrillo-Bustamante, Paola
How can we understand the transmission and evolution of malaria? Insights from an in-silico individual-based model
2019-03-12 Ananthasubramaniam, Bharath (PI)
Rhythmic Living Systems
Ultradian rhythms in the transcriptome of Neurospora crassa http://itb.biologie.hu-berlin.de/~bharath/
2019-03-05 Astaburuaga, Rosario
Systems Biology of Molecular Networks
Mathematical modeling of lysosomal ion homeostasis
2019-02-26 Uhlitz, Florian
Systems Biology of Molecular Networks
Single Cell RNA-Seq of Colorectal Cancer Organoids
2019-02-19 Basti, Alireza
Systems Biology of Cancer
In vivo and in vitro investigation of the circadian clock in human colorectal cancer
2019-02-12 Upadhyay, Abhishek
Molecular and Cellular Evolution
A degradation switch enables rhythm in a Neurospora clock model
2019-02-05 Klamser, Pascal
Collective Information Processing
Uncommon Risk-Behavior Evolution Due to Size-Selective Harvesting in Zebrafish
2019-01-29 Schuppner, Rike-Benjamin
System Administration
Frequently asked questions https://itbgit.biologie.hu-berlin.de/schuppner/itb-infrastructure-2019/blob/master/ITB%20Meeting%202019.pdf
2019-01-22 Faizi, Marjan
Metabolic Networks
Modeling a self-adapting system of phototrophic growth
2019-01-15 D'Albis, Tiziano
Theoretical Neuroscience
The origin of grid-cell patterns
2019-01-08 Schieferstein, Natalie
Mechanisms of phase precession in the hippocampal formation
2018-12-11 Genov, Nikolai
Systems Biology of Cancer
Time-dependent Isoform Expression Changes
2018-12-04 Kuokkanen, Paula
Theoretical Neuroscience
From single cells to extracellular field potentials and EEG
2018-11-27 Burt, Phillipp
Systems Biology of Inflammation
Response-time modeling of T helper cell differentiation
2018-11-20 Thurley, Kevin (PI)
Systems Biology of Inflammation
Modeling cell-cell communication dynamics in inflammatory responses
2018-11-13 Contreras, Susana
Computational Neurophysiology
An activity-induced transition in single-cell spiking dynamics
2018-11-06 Rose, Pia
Computational Neurophysiology
Neurobiology without neurons
2018-10-30 Romanczuk, Pawel (PI)
Collective Information Processing
Less is more - Limited attention facilitates collective migration in complex environments
2018-10-23 Pfeiffer, Paul
Computational Neurophysiology
Short term memory - Bistable neurons and reverberatory networks
2018-10-16 König, Matthias (PI)
Systems Biology of Liver
Modelling liver function tests - LiMAx
2018-10-09 Steuer, Ralf (PI)
Metabolic Networks
Modelling Phototrophic Growth
2018-10-02 Carlos Aguilar (PI)
Mapping the fungal web: Ecosystem functions to inspire human-made networks
2018-09-18 Schmal, Christoph (PI)
Computational Chronobiology
Dissociation of Intracellular Feedback Loops in the Mammalian Circadian Clock
2018-09-11 Rydenfelt, Mattias
Systems Biology of Molecular Networks
None
2018-07-17 Hammerstein, Peter (PI)
Evolution of Organismic Systems
Celebrating the end of the semester with a look at Australian outback adventures
2018-07-10 Winkelhöfer, Karin
Berlin waste water management
2018-07-03 Reifenstein, Eric
Computational Neurophysiology
Neuronal mechanisms of sequence learning
2018-06-26 Genov, Nikolai
Systems Biology of Cancer
2018-06-19 Evangelista, Roberta
Theoretical Neuroscience
A 3-populations spiking model for the generation of hippocampal sharp wave-ripple oscillations
2018-06-12 Meisig, Johannes
Systems Biology of Molecular Networks
Reconstructing gene regulatory networks in stem cells
2018-06-05 Bluethgen, Nils (PI)
Systems Biology of Molecular Networks
Colon cancer - cell by cell
2018-05-28 Li, Yin
Systems Biology of Cancer
Characterization of circadian clock in mammalian cancer cells
2018-05-21 Del Olmo, Marta
Molecular and Cellular Evolution
Circadian redox system
2018-05-15 El-Athman, Rukeia
Systems Biology of Cancer
Analysis of the circadian splicosome
2018-05-08 Grzegorzewski, Jan
Virus Classification by Pattern Recognition applied on Peptide-Virus Interactions
2018-04-24 Klinger, Bertram
Systems Biology of Molecular Networks
Studying oncogenic effects of RAS
2018-04-17 Holzbecher, André
Theoretical Neuroscience
Interneuronal gap junctions increase the synchrony of hippocampal ripple oscillations
2018-03-27 Relógio, Angela (PI)
A brief history of time
2018-03-20 Herzel, Hanspeter (PI)
Molecular and Cellular Evolution
The Choroid Plexus is an Important Circadian Clock Component
2018-03-13 Schleimer, Jan-Hendrik
Computational Neurophysiology
It's: Monty Python's Flying Circuit https://github.com/matthiaskoenig/itbmeeting/raw/master/slides/2018-03-13_schleimer.pdf
2018-03-06 Gross, Torsten
Systems Biology of Molecular Networks
A signalling network model predicts differential drug response of PIK3 mutants in a colon cancer cell line. wiki/members/grosstor
2018-02-27 König, Matthias (PI)
Systems Biology of Liver
A Quick Introduction to Version Control with Git
2018-02-20 Clara Jongen
Research on Complex Systems
Defining the scope: A context specific approach to identifying key airports during a pandemic.
2018-02-13 Sell, Thomas
What is mass cytometry?
2018-01-30 Witzel, Franziska
Systems Biology of Molecular Networks
Integral feedback control in Erk1/2 signalling 2018-01-30_witzel.pdf
2018-01-23 Wilkins, Adams
ITB
2018-01-16 Upadhyay, Abhishek
Molecular and Cellular Evolution
Mathematical modeling of circadian clock in Neurospora crassa
2018-01-09 Obermayer, Benedikt
Bioinformatics Core Unit
Global characterization of post-transcriptional gene regulation at the onset of neuronal differentiation
2017-12-12 Uhlitz, Florian
Systems Biology of Molecular Networks
Single cell RNAseq of colorectal cancer
2017-12-05 Basti, Alireza
Systems Biology of Cancer
Gene editing via CRISPR/CAS9
2017-11-28 Ünal, Evrim Besray
Systems Biology of Molecular Networks
Systems level expression correlation of Ras-like GTPase regulators and dysregulation in cancer.
2017-11-21 Ananthasubramaniam, Bharath (PI)
Rhythmic Living Systems
BodyTime: A new diagnostic tool to assess the internal clock
2017-11-14 Schuppner, Rike-Benjamin
System Administration
Technical Depth - Computers at the ITB http://docs.itb.pri/TechnicalDepth/assets/player/KeynoteDHTMLPlayer.html#1
2017-11-07 Klamser, Pascal
Collective Information Processing
Collective Performance in Presence of a Predator: An inhomogeneous, local field.
2017-10-24 Faizi, Marjan
Metabolic Networks
Cyanobacterial growth with intrinsic feedback
2017-10-17 Schieferstein, Natalie
Mechanisms of phase precession in the hippocampal formation.
2017-10-10 D'Albis, Tiziano
Theoretical Neuroscience
The origin of grid-cell patterns.
2017-09-26 Kuokkanen, Paula
Theoretical Neuroscience
Decomposing the neurophonic in the NL of the Barn Owl.
2017-09-19 Contreras, Susana
Computational Neurophysiology
The wonderlust gene
2017-09-05 Rose, Pia
Computational Neurophysiology
The influence of temperature on neuronal processing
2017-07-18 Pfeiffer, Paul
Computational Neurophysiology
Test-driven development
2017-07-11 König, Matthias (PI)
Systems Biology of Liver
Computational modeling of liver function tests: Why you need more coffee when you smoke
2017-07-04 Romanczuk, Pawel (PI)
Collective Information Processing
Collective Information Processing: How critical is it to be critical?
2017-06-27 Karin Winklhöfer und Elvira Lauterbach
ITB Symposium Organization Meeting
2017-06-20 Steuer, Ralf (PI)
Metabolic Networks
The protein economy of growth: How to multiply yourself in seven steps.
2017-06-13 Schreiber, Susanne (PI)
Computational Neurophysiology
Cold-induced silencing of neuronal activity
2017-06-06 Schmal, Christoph (PI)
Computational Chronobiology
Mammalian circadian clock - Network of coupled oscillators
2017-05-30 Rydenfelt, Mattias
Systems Biology of Molecular Networks
Drug sensitivity in cancer cell lines
2017-05-23 Remme, Michiel
Computational Neurophysiology and Neuroscience
The energetic cost of the brain
2017-05-16 Schleimer, Jan-Hendrik
Computational Neurophysiology
2017-05-09 Abreu, Mónica
Systems Biology of Cancer
Circadian analysis of the immune system
2017-05-02 Reifenstein, Eric
Computational Neurophysiology
Sequence learning in rats and humans
2017-04-25 Michalikova, Martina
Theoretical Neuroscience
Post-journal utopia & how to move there faster.
2017-04-04 Genov, Nikolai
Systems Biology of Cancer
Ultradian rhythms are evolutionary more conserved and play key roles in vital cellular functions.
2017-03-28 McColgan, Thomas
Theoretical Neuroscience
Report of the GPU modeling retreat
2017-03-21 Meisig, Johannes
Systems Biology of Molecular Networks
Modeling gene expression in spontaneous and perturbed differentiation
2017-03-14 Evangelista, Roberta
Theoretical Neuroscience
Bistable activation of CA3 interneurons can explain the generation of sharp wave-ripple oscillations
2017-03-07 Kremkow, Jens
Theoretical Neuroscience
What causes a cortical action potential, in vivo?
2017-02-28 El-Athman, Rukeia
Systems Biology of Cancer
Molecular Modelling of the Oligomeric Pore of the Tight Junction Protein Claudin-10b
2017-02-14 Knoop, Henning
Metabolic Networks
Metabolic modeling of cyanobacteria
2017-02-07 Klinger, Bertram
Systems Biology of Molecular Networks
The coffee ring effect
2017-01-31 Holzbecher, André
Theoretical Neuroscience
Memory - how we remember places, and why electrical synapses might play a role in that
2017-01-17 Herzel, Hanspeter (PI)
Molecular and Cellular Evolution
Modeling rhythms in cells, tissues, and organisms 2017-01-17_herzel.pdf
2017-01-10 Hesse, Janina
Computational Neurophysiology
Trace your favorite drawings - getting around copy rights with inkscape
2016-12-13 Gross, Torsten
Systems Biology of Molecular Networks
Finding patterns in perturbation data that reveal an underlying network
2016-11-29 Fuhr, Luise
Systems Biology of Cancer
Clock-genes and mitochondrial respiratory activity: Evidence of a reciprocal interplay.
2016-11-29 Bluethgen, Nils (PI)
Systems Biology of Molecular Networks
Noise in cancer
2016-11-22 Baranov, Olga
Research on Complex Systems
Real world networks
2016-11-08 Donoso, José R.
Theoretical Neuroscience
Microvision in cyanobacteria (http://dx.doi.org/10.7554/eLife.12620) 2016-11-08_donoso.pdf
2016-11-01 Benary, Manuela
Systems Biology of Molecular Networks
Project proposal
2016-10-25 Maier, Benjamin
Flockworks: A class of dynamic network models for face-to-face interactions
2016-10-18 Witzel, Franziska
Systems Biology of Molecular Networks
Oncogene-induced Senescence 2016-10-18_witzel.pdf
2016-10-11 Bordyugov, Grischa
Molecular and Cellular Evolution
Programming with closures for fun and profit 2016-10-11_bordyugov.pdf

Organisation

If it is your turn at the ITB meeting, please prepare a short talk (15 min + 5 min discussion) that is related to your research (your own project or a very interesting finding of other groups). Please make sure that the video-projector and laptop are in place at 14:00. If you are scheduled for House 4 - the projector is already installed in the seminar room. If you are unable to give the talk at the date indicated, please find a replacement.

Titles for the talks should be sent until Monday 12PM to: Bharath Ananthasubramaniam

Thank you for your effort to keep ITB a vital and exciting meeting point for theoretical and experimental biologists!

Meeting Alumni

Name Group
Basti, Alireza Systems Biology of Cancer
Hesse, Janina Systems Biology of Cancer
Poel, Winnie Collective Information Processing
Kwon, Gino Systems Biology of Inflammation
Burt, Phillipp Systems Biology of Inflammation
Brunner, Patrick Systems Biology of Inflammation
Thurley, Kevin (PI) Systems Biology of Inflammation
Contreras, Susana Computational Neurophysiology
Westermark, Pål (PI) Systems Biology of Aging and the Circadian
Wilmes, Katharina Computational Neurophysiology
Roemschied, Frederic Computational Neurophysiology
Chenkov, Nikolay Theoretical Neuroscience
Westermark, Stefanie Metabolic Networks
Lehmann, Robert Celldeg.com
Ruegen, Marco Metabolic Networks
Lueck, Sarah Systems Biology of Aging and the Circadian Clock
Knoop, Henning Metabolic Networks
Thaben, Paul Systems Biology of Aging and the Circadian Clock
Bordyugov, Grischa Molecular and Cellular Evolution
Zug, Roman Evolution of Organismic Systems
McColgan, Thomas Theoretical Neuroscience
Michalikova, Martina Theoretical Neuroscience
Fuhr, Luise Systems Biology of Cancer
Donoso, José R. Theoretical Neuroscience
Hesse, Janina Computational Neurophysiology
Ünal, Evrim Besray Systems Biology of Molecular Networks
Kremkow, Jens Theoretical Neuroscience
Abreu, Mónica Systems Biology of Cancer
Remme, Michiel Computational Neurophysiology and Neuroscience
Holzbecher, André Theoretical Neuroscience
Witzel, Franziska Systems Biology of Molecular Networks
Pett, Patrick Molecular and Cellular Evolution
Baranov, Olga Research on Complex Systems
Clara Jongen Research on Complex Systems
Rydenfelt, Mattias Systems Biology of Molecular Networks
Evangelista, Roberta Theoretical Neuroscience
Genov, Nikolai Systems Biology of Cancer
El-Athman, Rukeia Systems Biology of Cancer
Li, Yin Systems Biology of Cancer
Faizi, Marjan Metabolic Networks
Uhlitz, Florian Systems Biology of Molecular Networks
Benary, Manuela Systems Biology of Molecular Networks
Rose, Pia Computational Neurophysiology
Reifenstein, Eric Computational Neurophysiology
D'Albis, Tiziano Theoretical Neuroscience
Meisig, Johannes Systems Biology of Molecular Networks
Klamser, Pascal Collective Information Processing
Borek, Zuzanna Systems Biology of Inflammation
Gustav, Geissler Systems Biology of Inflammation
Upadhyay, Abhishek Molecular and Cellular Evolution
Dorel, Mathurin Systems Biology of Molecular Networks
Gross, Torsten Systems Biology of Molecular Networks