Reference:
Ilka M. Axmann, Philip R. Kensche, Jörg Vogel, Stefan Kohl, Hanspeter Herzel, and Wolfgang R. Hess. Identification of cyanobacterial non-coding RNAs by comparative genome analysis. 2005.
In the sub-tables for each cluster orientation the following short identifiers are used for the cyanobacterial species used in the analysis.
| Species Name | Short ID |
|---|---|
| Prochlorococcus MED4 | E |
| Prochlorococcus SS120 | S |
| Prochlorococcus MIT 9313 | I1 |
| Synechococcus WH 8102 | W1 |
Mean: mean of background; Stdv: standard deviation of background; PID: percentage identity of alignment as returned by BioPerl (i.e. ignoring any gap characters); CLID: cluster identifier Z: Z-score yielded from ALIFOLDZ.
Clusters are sorted according to the minimum of the Z-score of the cluster orientations (forward, backward).
| forward | backward | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| No. Sequences | CLID | Z | Mean | Stdv | CLID | Z | Mean | Stdv | PID | Comment |
| 3 | 194 | -6.28 | -3.81 | 2.11 | 194.rev | -12.94 | -6.17 | 2.18 | 83.2 | yfr2, yfr3, yfr4 from MED4 |
| 3 | 5 | -7.58 | -12.89 | 3.28 | 5.rev | -10.18 | -13.50 | 2.80 | 66.6 | rplCD operon leader, corresponds to E. coli rpsJ (S10) operon (Sanangelantoni and Tiboni, 1993; Zengel et al. 1980) |
| 5 | 92 | -4.47 | -35.87 | 4.98 | 92.rev | -9.90 | -49.41 | 5.79 | 76.9 | rrn operon leader (Condon et al. 1995; Li et al. 1984) |
| 2 | 112 | -8.15 | -2.52 | 2.07 | 112.rev | -9.15 | -2.99 | 2.11 | 74.5 | Two sequences from MED4 with a maximum reciprocal coverage of 7.9%. Low sequence complexity. |
| 2 | 229 | -7.98 | -41.70 | 3.31 | 229.rev | -4.90 | -34.92 | 3.76 | 76.6 | very similar seqs of MIT9313 and WH8102, compensatory base mutations, possibly ncRNAs |
| 2 | 227 | -7.38 | -40.86 | 3.86 | 227.rev | -7.32 | -41.45 | 3.89 | 74.5 | rplJ leader (Christensen et al. 1984) |
| 1 | 84 | -6.27 | -30.66 | 3.68 | 84.rev | -5.54 | -30.95 | 3.39 | 0.0 | yfr2 from SS120 |
| 3 | 101 | -5.77 | -2.93 | 2.15 | 101.rev | -5.61 | -4.51 | 2.32 | 78.7 | putative Cobalamin riboswitch (Nahvi et al. 2004; Vitreschak et al. 2003) |
| 2 | 226 | -5.29 | -23.97 | 3.51 | 226.rev | -5.28 | -24.85 | 3.58 | 78.5 | conserved position downstream of rplL and an inserted conserved hypothetical protein, possible double-terminator structure (TransTerm score 93-100% (Ermolaeva et al. 2000)) |
| 6 | 9 | -4.38 | -12.84 | 3.22 | 9.rev | -4.95 | -14.11 | 3.38 | 70.5 | no conserved position, no significant BLASTN hit to MED4 |
| 2 | 51 | -0.84 | -22.18 | 3.97 | 51.rev | -4.92 | -17.29 | 2.74 | 81.2 | yfr7 |
| 9 | 53 | -3.26 | -3.48 | 2.10 | 53.rev | -4.59 | -3.54 | 2.15 | 62.6 | yfr6 of MED4 and SS120, experimentally verified, two previously not annotated genes in MED4 and MIT9313 (PMM3822n and PMT3904n), the 5' UTR sequences for the genes Pro0415 (in SS120), SYNW1950 and SYNW2450 (in WH 8102) |
| 2 | 245 | -3.70 | -46.09 | 3.85 | 245.rev | -4.53 | -39.95 | 3.95 | 71.4 | rpoBC leader (Barryet al. 1980; Linn 1992) |
| 1 | 217 | -1.63 | -38.92 | 4.03 | 217.rev | -4.28 | -32.27 | 3.41 | 0.0 | bi-directional promoter-region of two-component sensor histidine kinase and conserved hypothetica protein in MED4 |
| 2 | 87 | -4.24 | -25.78 | 3.80 | 87.rev | -3.64 | -25.46 | 3.24 | 63.5 | conserved bi-directional promoter region for rbcLS cluster (Vogel et al. 2003a) and HAM1 family protein (purine metabolism) |
| 2 | 228 | -0.67 | -26.52 | 3.50 | 228.rev | -4.00 | -27.08 | 3.40 | 71.2 | between nusG and rpl11,GC peak (Branlant et al. 1981; Huynen and Bork 1998) |
| 2 | 257 | -3.42 | -33.01 | 3.69 | 257.rev | -3.97 | -24.03 | 3.75 | 74.3 | yfr1 |
| 3 | 2 | -3.93 | -9.78 | 2.68 | 2.rev | -2.94 | -9.65 | 2.63 | 78.0 | putative TPP Riboswitch (Winkler et al. 2002) |
| 2 | 239 | -3.76 | -29.14 | 3.22 | 239.rev | -1.47 | -31.46 | 3.74 | 65.0 | |
| 1 | 65 | -0.84 | -20.81 | 2.94 | 65.rev | -3.60 | -20.11 | 3.14 | 0.0 | |
| 1 | 234 | -3.60 | -119.53 | 4.58 | 234.rev | -2.03 | -107.78 | 5.57 | 0.0 | |
| 1 | 166 | -2.71 | -94.76 | 5.07 | 166.rev | -3.59 | -92.76 | 4.72 | 0.0 | |
| 1 | 13 | -2.18 | -68.92 | 4.19 | 13.rev | -3.54 | -61.74 | 4.05 | 0.0 | |
| 1 | 98 | -2.14 | -31.78 | 3.49 | 98.rev | -3.53 | -31.75 | 3.62 | 0.0 | |
| 2 | 271 | -3.51 | -29.87 | 3.69 | 271.rev | -3.37 | -24.38 | 3.47 | 74.5 | |
| 1 | 30 | -2.78 | -100.52 | 5.14 | 30.rev | -3.26 | -97.62 | 5.29 | 0.0 | |
| 1 | 244 | -3.01 | -55.23 | 3.94 | 244.rev | -3.06 | -46.85 | 4.18 | 0.0 | |
| 1 | 37 | -0.79 | -167.68 | 6.50 | 37.rev | -3.05 | -164.85 | 6.22 | 0.0 | |
| 1 | 114 | -3.03 | -228.58 | 6.92 | 114.rev | -1.51 | -234.38 | 6.67 | 0.0 | |
| 1 | 142 | -2.99 | -68.61 | 4.28 | 142.rev | -1.06 | -74.34 | 4.61 | 0.0 | |
| 2 | 269 | -2.95 | -42.05 | 4.55 | 269.rev | -2.54 | -40.42 | 3.89 | 69.2 | |
| 2 | 281 | -2.80 | -23.30 | 3.31 | 281.rev | 0.10 | -25.78 | 3.32 | 83.1 | |
| 1 | 74 | -2.76 | -31.98 | 3.42 | 74.rev | -1.00 | -42.24 | 3.50 | 0.0 | |
| 1 | 288 | -2.75 | -131.71 | 5.78 | 288.rev | -1.68 | -134.08 | 5.25 | 0.0 | |
| 1 | 46 | -1.37 | -68.80 | 4.51 | 46.rev | -2.73 | -69.38 | 4.07 | 0.0 | |
| 1 | 235 | -2.68 | -31.83 | 3.24 | 235.rev | -0.70 | -36.73 | 3.51 | 0.0 | |
| 1 | 48 | 0.16 | -82.60 | 5.06 | 48.rev | -2.67 | -92.50 | 4.74 | 0.0 | |
| 1 | 69 | -2.66 | -34.45 | 3.46 | 69.rev | -1.88 | -36.79 | 3.56 | 0.0 | |
| 1 | 296 | -2.65 | -36.15 | 3.12 | 296.rev | -2.05 | -50.30 | 4.26 | 0.0 | |
| 1 | 258 | -2.64 | -117.72 | 5.10 | 258.rev | -1.62 | -101.98 | 6.15 | 0.0 | |
| 1 | 58 | -2.61 | -26.38 | 3.00 | 58.rev | 0.43 | -28.76 | 3.01 | 0.0 | |
| 1 | 252 | -0.93 | -21.54 | 3.31 | 252.rev | -2.51 | -17.77 | 2.87 | 0.0 | |
| 1 | 75 | -1.29 | -44.14 | 3.45 | 75.rev | -2.50 | -49.46 | 3.88 | 0.0 | |
| 2 | 273 | -2.49 | -20.22 | 3.46 | 273.rev | -1.06 | -21.29 | 3.73 | 82.3 | similar to E. coli t44 RNA (Rivas and Eddy 2001) |
| 1 | 76 | -2.40 | -101.84 | 4.97 | 76.rev | -1.79 | -94.03 | 5.63 | 0.0 | |
| 1 | 298 | -2.05 | -36.48 | 3.73 | 298.rev | -2.37 | -39.52 | 3.28 | 0.0 | |
| 1 | 280 | -1.37 | -81.94 | 5.21 | 280.rev | -2.32 | -88.72 | 5.39 | 0.0 | |
| 1 | 107 | -2.28 | -64.27 | 3.61 | 107.rev | -1.10 | -66.88 | 5.02 | 0.0 | |
| 2 | 283 | -2.27 | -9.41 | 2.50 | 283.rev | -1.16 | -7.04 | 2.67 | 80.7 | tiny spacer, conserved position |
| 1 | 186 | -0.27 | -68.43 | 5.69 | 186.rev | -2.27 | -71.99 | 4.09 | 0.0 | |
| 1 | 103 | -2.02 | -33.77 | 3.73 | 103.rev | -2.23 | -31.03 | 3.37 | 0.0 | |
| 1 | 44 | -2.23 | -68.93 | 4.46 | 44.rev | -0.55 | -72.72 | 4.83 | 0.0 | |
| 1 | 176 | -0.95 | -30.29 | 3.55 | 176.rev | -2.18 | -40.03 | 3.49 | 0.0 | |
| 1 | 28 | -0.27 | -50.84 | 3.80 | 28.rev | -2.16 | -53.20 | 4.59 | 0.0 | |
| 1 | 300 | -2.13 | -86.40 | 5.17 | 300.rev | -1.81 | -102.17 | 4.34 | 0.0 | |
| 2 | 240 | -2.12 | -52.26 | 4.72 | 240.rev | -0.52 | -40.71 | 4.52 | 75.1 | |
| 1 | 259 | 0.05 | -48.63 | 3.72 | 259.rev | -2.10 | -55.89 | 4.22 | 0.0 | |
| 1 | 192 | -1.25 | -211.00 | 8.10 | 192.rev | -2.10 | -202.26 | 7.00 | 0.0 | |
| 1 | 248 | -2.10 | -21.46 | 3.09 | 248.rev | 0.36 | -22.93 | 3.74 | 0.0 | |
| 1 | 174 | -0.52 | -63.23 | 4.18 | 174.rev | -2.08 | -52.47 | 3.96 | 0.0 | |
| 1 | 198 | -2.04 | -28.42 | 3.01 | 198.rev | -1.33 | -27.91 | 3.21 | 0.0 | |
| 2 | 102 | -2.03 | -2.50 | 1.78 | 102.rev | -0.09 | -1.26 | 1.52 | 77.9 | possible replication origin, dnaA boxes |
| 2 | 29 | -2.02 | -20.42 | 2.95 | 29.rev | -1.42 | -10.57 | 3.08 | 69.9 | |
| 1 | 256 | -2.02 | -26.28 | 3.42 | 256.rev | -1.23 | -27.36 | 3.12 | 0.0 | |
| 2 | 18 | -0.95 | -5.70 | 2.00 | 18.rev | -1.96 | -1.96 | 1.54 | 74.5 | |
| 1 | 279 | -1.67 | -422.45 | 9.53 | 279.rev | -1.94 | -388.41 | 9.07 | 0.0 | |
| 1 | 292 | -0.10 | -21.77 | 3.36 | 292.rev | -1.93 | -23.14 | 2.96 | 0.0 | |
| 1 | 193 | -0.16 | -54.42 | 4.24 | 193.rev | -1.93 | -55.56 | 3.94 | 0.0 | |
| 1 | 117 | -1.91 | -91.15 | 5.59 | 117.rev | -0.94 | -81.85 | 5.33 | 0.0 | |
| 1 | 95 | -1.34 | -50.82 | 4.38 | 95.rev | -1.89 | -48.40 | 3.59 | 0.0 | |
| 1 | 265 | -1.87 | -206.22 | 6.76 | 265.rev | -1.87 | -200.05 | 7.31 | 0.0 | |
| 2 | 277 | -1.68 | -16.95 | 3.31 | 277.rev | -1.84 | -24.11 | 3.36 | 69.4 | |
| 1 | 4 | -1.63 | -19.83 | 3.18 | 4.rev | -1.83 | -20.08 | 3.19 | 0.0 | |
| 1 | 32 | -1.82 | -165.09 | 6.06 | 32.rev | -1.36 | -141.87 | 6.22 | 0.0 | |
| 1 | 294 | -1.81 | -81.62 | 4.33 | 294.rev | -0.58 | -80.53 | 5.14 | 0.0 | |
| 1 | 278 | -0.17 | -209.54 | 6.66 | 278.rev | -1.79 | -209.77 | 7.69 | 0.0 | |
| 1 | 164 | -1.79 | -15.64 | 2.88 | 164.rev | -1.59 | -17.24 | 2.47 | 0.0 | |
| 1 | 54 | -1.78 | -87.65 | 5.14 | 54.rev | -0.89 | -72.24 | 5.38 | 0.0 | |
| 1 | 82 | -1.22 | -14.07 | 2.85 | 82.rev | -1.78 | -25.30 | 3.19 | 0.0 | |
| 1 | 241 | -1.72 | -18.41 | 3.03 | 241.rev | -0.92 | -19.38 | 3.49 | 0.0 | |
| 2 | 242 | -1.71 | -72.85 | 5.07 | 242.rev | -1.41 | -82.95 | 5.08 | 64.8 | |
| 2 | 254 | -1.67 | -33.60 | 3.79 | 254.rev | -1.36 | -23.73 | 4.01 | 77.7 | |
| 1 | 249 | -1.66 | -133.56 | 5.17 | 249.rev | -0.60 | -107.83 | 4.88 | 0.0 | |
| 2 | 225 | 0.59 | -52.27 | 4.61 | 225.rev | -1.65 | -48.71 | 4.70 | 68.9 | |
| 1 | 89 | -1.65 | -82.09 | 5.45 | 89.rev | -0.86 | -86.39 | 4.59 | 0.0 | |
| 2 | 247 | -0.85 | -43.87 | 3.62 | 247.rev | -1.64 | -36.34 | 3.89 | 71.2 | |
| 1 | 286 | -0.54 | -14.91 | 2.91 | 286.rev | -1.62 | -19.96 | 2.93 | 0.0 | |
| 1 | 215 | 0.78 | -92.34 | 4.97 | 215.rev | -1.62 | -109.40 | 4.92 | 0.0 | |
| 1 | 86 | -1.31 | -16.69 | 2.67 | 86.rev | -1.60 | -19.91 | 3.43 | 0.0 | |
| 1 | 261 | -0.83 | -36.10 | 3.32 | 261.rev | -1.60 | -37.51 | 3.50 | 0.0 | |
| 1 | 115 | -1.59 | -49.51 | 3.84 | 115.rev | -0.26 | -59.55 | 4.74 | 0.0 | |
| 1 | 187 | -1.59 | -85.40 | 4.90 | 187.rev | -0.67 | -87.40 | 4.81 | 0.0 | |
| 1 | 305 | -1.26 | -22.51 | 3.11 | 305.rev | -1.54 | -25.61 | 3.52 | 0.0 | |
| 1 | 262 | -1.54 | -95.08 | 5.34 | 262.rev | -0.41 | -90.39 | 5.06 | 0.0 | |
| 1 | 52 | 0.30 | -38.68 | 4.02 | 52.rev | -1.51 | -47.00 | 4.00 | 0.0 | |
| 1 | 33 | -1.51 | -35.29 | 3.28 | 33.rev | 0.82 | -42.26 | 3.72 | 0.0 | |
| 1 | 237 | -1.50 | -47.51 | 4.27 | 237.rev | -1.47 | -40.16 | 3.80 | 0.0 | |
| 1 | 213 | 1.07 | -97.05 | 5.09 | 213.rev | -1.50 | -106.07 | 5.13 | 0.0 | |
| 1 | 118 | -0.50 | -88.44 | 4.57 | 118.rev | -1.49 | -89.79 | 4.50 | 0.0 | |
| 1 | 81 | -1.28 | -22.02 | 3.30 | 81.rev | -1.47 | -21.99 | 3.57 | 0.0 | |
| 1 | 275 | -1.45 | -23.41 | 3.60 | 275.rev | -1.26 | -18.92 | 2.90 | 0.0 | |
| 2 | 250 | -0.59 | -13.21 | 2.68 | 250.rev | -1.44 | -7.77 | 2.37 | 90.2 | |
| 1 | 45 | -1.42 | -40.37 | 3.67 | 45.rev | -0.31 | -40.81 | 3.97 | 0.0 | |
| 1 | 230 | -1.41 | -106.24 | 4.60 | 230.rev | -0.41 | -76.41 | 4.79 | 0.0 | |
| 1 | 216 | 0.14 | -70.41 | 4.29 | 216.rev | -1.40 | -81.99 | 4.38 | 0.0 | |
| 1 | 133 | -0.84 | -47.08 | 4.45 | 133.rev | -1.40 | -68.92 | 4.43 | 0.0 | |
| 1 | 182 | -1.37 | -33.34 | 3.94 | 182.rev | -0.66 | -40.42 | 3.61 | 0.0 | |
| 1 | 169 | -0.75 | -101.35 | 5.12 | 169.rev | -1.36 | -83.91 | 5.15 | 0.0 | |
| 1 | 24 | -1.36 | -153.65 | 5.06 | 24.rev | -0.64 | -145.02 | 6.57 | 0.0 | |
| 2 | 185 | -1.36 | -1.90 | 1.73 | 185.rev | -1.19 | -1.59 | 1.61 | 72.4 | no conserved position, no GC peak |
| 1 | 134 | -0.37 | -74.32 | 4.07 | 134.rev | -1.36 | -69.94 | 3.90 | 0.0 | |
| 1 | 156 | -0.42 | -161.01 | 5.94 | 156.rev | -1.34 | -162.91 | 6.51 | 0.0 | |
| 1 | 144 | 0.28 | -26.18 | 3.60 | 144.rev | -1.33 | -28.49 | 3.74 | 0.0 | |
| 1 | 3 | -0.04 | -15.21 | 2.51 | 3.rev | -1.31 | -8.89 | 2.46 | 0.0 | |
| 1 | 302 | -0.79 | -28.08 | 3.61 | 302.rev | -1.30 | -18.74 | 2.83 | 0.0 | |
| 1 | 25 | -1.00 | -14.86 | 2.85 | 25.rev | -1.30 | -16.91 | 2.40 | 0.0 | |
| 1 | 205 | 0.10 | -107.70 | 4.82 | 205.rev | -1.29 | -108.55 | 4.78 | 0.0 | |
| 1 | 299 | -1.29 | -38.16 | 4.09 | 299.rev | -0.08 | -42.25 | 3.38 | 0.0 | |
| 1 | 266 | -0.06 | -73.11 | 5.00 | 266.rev | -1.27 | -64.50 | 4.80 | 0.0 | |
| 1 | 167 | -1.26 | -80.11 | 4.68 | 167.rev | -0.97 | -78.56 | 4.94 | 0.0 | |
| 1 | 68 | -1.20 | -13.57 | 2.47 | 68.rev | 0.12 | -14.47 | 2.52 | 0.0 | |
| 1 | 83 | 0.39 | -55.08 | 4.02 | 83.rev | -1.19 | -65.51 | 4.42 | 0.0 | |
| 1 | 199 | 0.50 | -15.31 | 2.36 | 199.rev | -1.13 | -18.46 | 3.03 | 0.0 | |
| 1 | 15 | -0.94 | -84.20 | 4.77 | 15.rev | -1.13 | -72.50 | 4.51 | 0.0 | |
| 1 | 109 | -1.11 | -106.10 | 5.54 | 109.rev | -0.58 | -104.12 | 5.77 | 0.0 | |
| 1 | 293 | 0.60 | -145.43 | 5.14 | 293.rev | -1.10 | -136.08 | 5.33 | 0.0 | |
| 1 | 59 | -1.07 | -47.22 | 4.01 | 59.rev | -0.30 | -63.72 | 4.20 | 0.0 | |
| 1 | 57 | -1.07 | -31.58 | 2.95 | 57.rev | -0.66 | -33.80 | 3.55 | 0.0 | |
| 1 | 71 | -1.07 | -44.63 | 4.05 | 71.rev | -0.31 | -35.13 | 3.53 | 0.0 | |
| 1 | 290 | -1.06 | -35.27 | 2.95 | 290.rev | -0.08 | -34.79 | 4.06 | 0.0 | |
| 1 | 306 | -1.06 | -25.54 | 3.03 | 306.rev | -0.27 | -32.47 | 3.37 | 0.0 | |
| 1 | 181 | -0.13 | -28.64 | 3.23 | 181.rev | -1.05 | -24.30 | 3.60 | 0.0 | |
| 1 | 27 | -1.05 | -38.72 | 3.69 | 27.rev | -0.54 | -46.10 | 3.50 | 0.0 | |
| 1 | 222 | -1.04 | -38.77 | 3.88 | 222.rev | -0.41 | -35.77 | 3.47 | 0.0 | |
| 1 | 209 | 0.71 | -28.89 | 3.34 | 209.rev | -1.03 | -21.19 | 2.78 | 0.0 | |
| 1 | 148 | -1.03 | -73.46 | 4.34 | 148.rev | -0.77 | -72.41 | 4.77 | 0.0 | |
| 1 | 41 | -1.00 | -26.96 | 3.55 | 41.rev | -0.58 | -31.81 | 2.96 | 0.0 | |
| 2 | 238 | 0.80 | -39.19 | 3.38 | 238.rev | -1.00 | -38.98 | 4.24 | 75.2 | |
| 1 | 190 | -0.10 | -50.33 | 3.98 | 190.rev | -1.00 | -61.33 | 3.87 | 0.0 | |
| 1 | 19 | -0.67 | -31.35 | 3.18 | 19.rev | -0.99 | -36.11 | 3.41 | 0.0 | |
| 2 | 268 | 0.55 | -16.10 | 2.83 | 268.rev | -0.95 | -10.95 | 2.37 | 75.0 | |
| 1 | 113 | 0.24 | -127.03 | 5.36 | 113.rev | -0.94 | -127.53 | 6.03 | 0.0 | |
| 1 | 99 | -0.94 | -15.42 | 3.01 | 99.rev | -0.74 | -17.40 | 2.93 | 0.0 | |
| 1 | 214 | 0.34 | -66.75 | 4.52 | 214.rev | -0.93 | -71.38 | 4.65 | 0.0 | |
| 1 | 153 | 0.01 | -69.94 | 5.33 | 153.rev | -0.93 | -62.00 | 4.28 | 0.0 | |
| 1 | 31 | -0.92 | -23.58 | 3.07 | 31.rev | -0.24 | -23.39 | 3.11 | 0.0 | |
| 1 | 104 | -0.48 | -90.46 | 4.83 | 104.rev | -0.91 | -90.40 | 5.77 | 0.0 | |
| 1 | 7 | -0.89 | -19.59 | 3.43 | 7.rev | 0.67 | -22.33 | 2.58 | 0.0 | |
| 1 | 11 | 1.08 | -41.65 | 3.75 | 11.rev | -0.88 | -33.29 | 3.81 | 0.0 | |
| 1 | 291 | -0.86 | -55.63 | 4.09 | 291.rev | 0.10 | -46.04 | 4.17 | 0.0 | |
| 1 | 108 | -0.68 | -54.07 | 3.95 | 108.rev | -0.86 | -54.99 | 4.38 | 0.0 | |
| 1 | 165 | 0.71 | -24.90 | 2.97 | 165.rev | -0.85 | -26.71 | 2.93 | 0.0 | |
| 1 | 267 | -0.83 | -68.55 | 4.40 | 267.rev | 0.37 | -74.24 | 4.53 | 0.0 | |
| 1 | 189 | 0.51 | -28.46 | 3.42 | 189.rev | -0.81 | -34.55 | 3.80 | 0.0 | |
| 1 | 16 | -0.27 | -46.88 | 4.20 | 16.rev | -0.81 | -42.13 | 3.80 | 0.0 | |
| 1 | 123 | -0.81 | -19.56 | 3.06 | 123.rev | 0.69 | -19.61 | 3.30 | 0.0 | |
| 1 | 78 | -0.81 | -60.07 | 4.52 | 78.rev | -0.69 | -59.67 | 4.23 | 0.0 | |
| 1 | 63 | -0.79 | -108.62 | 5.38 | 63.rev | -0.27 | -89.85 | 4.93 | 0.0 | |
| 1 | 223 | -0.79 | -34.86 | 3.24 | 223.rev | -0.02 | -58.57 | 3.51 | 0.0 | |
| 2 | 270 | 2.15 | -22.87 | 2.89 | 270.rev | -0.79 | -18.02 | 2.89 | 80.2 | |
| 2 | 66 | 0.28 | -6.82 | 2.53 | 66.rev | -0.78 | -5.95 | 2.64 | 69.1 | |
| 1 | 274 | -0.78 | -45.15 | 4.03 | 274.rev | 0.06 | -36.64 | 3.86 | 0.0 | |
| 1 | 12 | -0.29 | -66.08 | 4.29 | 12.rev | -0.76 | -49.18 | 4.14 | 0.0 | |
| 1 | 303 | 0.40 | -97.27 | 3.87 | 303.rev | -0.75 | -90.79 | 5.06 | 0.0 | |
| 1 | 17 | -0.59 | -53.53 | 3.90 | 17.rev | -0.75 | -62.59 | 4.51 | 0.0 | |
| 1 | 211 | 0.50 | -29.82 | 2.79 | 211.rev | -0.72 | -21.76 | 3.32 | 0.0 | |
| 1 | 100 | 0.22 | -32.95 | 3.31 | 100.rev | -0.72 | -46.54 | 3.43 | 0.0 | |
| 1 | 206 | -0.72 | -253.10 | 7.91 | 206.rev | -0.40 | -240.99 | 8.21 | 0.0 | |
| 1 | 289 | -0.70 | -24.16 | 3.21 | 289.rev | -0.69 | -29.65 | 3.41 | 0.0 | |
| 1 | 42 | 0.08 | -22.69 | 3.42 | 42.rev | -0.70 | -12.99 | 3.02 | 0.0 | |
| 1 | 6 | 0.97 | -22.25 | 2.86 | 6.rev | -0.68 | -31.76 | 3.34 | 0.0 | |
| 1 | 127 | 0.10 | -23.40 | 3.10 | 127.rev | -0.68 | -21.92 | 3.32 | 0.0 | |
| 1 | 62 | -0.38 | -76.26 | 4.39 | 62.rev | -0.67 | -67.04 | 4.93 | 0.0 | |
| 1 | 20 | -0.63 | -95.35 | 4.78 | 20.rev | -0.67 | -98.54 | 4.84 | 0.0 | |
| 1 | 207 | 0.05 | -24.72 | 3.21 | 207.rev | -0.65 | -26.93 | 2.97 | 0.0 | |
| 1 | 138 | 0.53 | -35.79 | 3.95 | 138.rev | -0.64 | -26.30 | 3.14 | 0.0 | |
| 1 | 255 | -0.64 | -47.25 | 4.05 | 255.rev | 1.31 | -42.42 | 3.83 | 0.0 | |
| 1 | 301 | 0.70 | -31.15 | 2.96 | 301.rev | -0.61 | -30.38 | 3.69 | 0.0 | |
| 1 | 26 | -0.41 | -18.08 | 2.69 | 26.rev | -0.59 | -23.68 | 3.15 | 0.0 | |
| 1 | 246 | -0.59 | -74.48 | 4.61 | 246.rev | 1.41 | -79.32 | 3.79 | 0.0 | |
| 1 | 282 | -0.59 | -94.08 | 4.56 | 282.rev | 0.27 | -108.73 | 5.39 | 0.0 | |
| 1 | 36 | -0.58 | -49.14 | 4.35 | 36.rev | 0.58 | -59.39 | 4.75 | 0.0 | |
| 1 | 160 | -0.21 | -49.87 | 4.00 | 160.rev | -0.57 | -31.18 | 3.29 | 0.0 | |
| 1 | 236 | -0.46 | -34.45 | 3.70 | 236.rev | -0.56 | -37.82 | 4.20 | 0.0 | |
| 1 | 231 | -0.52 | -35.60 | 3.16 | 231.rev | -0.42 | -32.69 | 3.76 | 0.0 | |
| 1 | 0 | -0.51 | -20.84 | 2.90 | 0.rev | 0.87 | -15.26 | 2.60 | 0.0 | |
| 1 | 202 | -0.21 | -74.70 | 5.18 | 202.rev | -0.51 | -78.54 | 4.86 | 0.0 | |
| 1 | 295 | -0.50 | -86.27 | 5.17 | 295.rev | 0.11 | -83.64 | 4.46 | 0.0 | |
| 1 | 94 | -0.47 | -34.82 | 3.56 | 94.rev | -0.41 | -25.84 | 3.45 | 0.0 | |
| 1 | 183 | -0.46 | -199.06 | 7.41 | 183.rev | 1.44 | -220.12 | 7.44 | 0.0 | |
| 1 | 93 | 0.58 | -60.16 | 4.37 | 93.rev | -0.46 | -63.41 | 4.53 | 0.0 | |
| 1 | 287 | 0.02 | -23.24 | 3.12 | 287.rev | -0.46 | -16.59 | 2.89 | 0.0 | |
| 1 | 253 | -0.46 | -133.18 | 5.12 | 253.rev | -0.20 | -110.71 | 6.31 | 0.0 | |
| 1 | 145 | 0.14 | -15.34 | 2.46 | 145.rev | -0.44 | -14.17 | 2.53 | 0.0 | |
| 1 | 208 | -0.42 | -87.55 | 5.81 | 208.rev | -0.43 | -89.48 | 4.84 | 0.0 | |
| 1 | 77 | 0.48 | -138.07 | 6.72 | 77.rev | -0.41 | -159.98 | 5.39 | 0.0 | |
| 1 | 201 | 0.00 | -20.81 | 2.92 | 201.rev | -0.41 | -26.73 | 3.23 | 0.0 | |
| 1 | 263 | -0.11 | -43.77 | 4.00 | 263.rev | -0.39 | -30.56 | 3.76 | 0.0 | |
| 1 | 90 | -0.39 | -60.16 | 4.07 | 90.rev | 0.56 | -70.29 | 4.54 | 0.0 | |
| 1 | 129 | -0.20 | -40.24 | 3.80 | 129.rev | -0.37 | -35.92 | 4.14 | 0.0 | |
| 1 | 260 | -0.37 | -104.86 | 5.06 | 260.rev | 0.28 | -113.77 | 5.38 | 0.0 | |
| 2 | 10 | -0.36 | -22.52 | 3.30 | 10.rev | 0.92 | -16.90 | 3.08 | 66.7 | |
| 1 | 110 | 0.64 | -32.28 | 3.79 | 110.rev | -0.36 | -23.82 | 3.17 | 0.0 | |
| 1 | 126 | -0.36 | -45.16 | 3.78 | 126.rev | 1.79 | -46.97 | 3.92 | 0.0 | |
| 1 | 285 | -0.35 | -63.24 | 4.45 | 285.rev | 0.90 | -51.76 | 4.42 | 0.0 | |
| 1 | 210 | 0.40 | -125.53 | 5.33 | 210.rev | -0.35 | -130.78 | 5.44 | 0.0 | |
| 1 | 212 | -0.34 | -70.19 | 4.62 | 212.rev | 0.51 | -72.61 | 4.74 | 0.0 | |
| 1 | 131 | -0.13 | -54.94 | 4.09 | 131.rev | -0.32 | -47.11 | 3.92 | 0.0 | |
| 1 | 96 | 0.73 | -47.98 | 4.11 | 96.rev | -0.32 | -56.78 | 4.06 | 0.0 | |
| 1 | 132 | 0.33 | -58.72 | 4.93 | 132.rev | -0.32 | -65.84 | 4.27 | 0.0 | |
| 1 | 49 | 0.26 | -187.45 | 6.91 | 49.rev | -0.30 | -166.96 | 6.50 | 0.0 | |
| 5 | 80 | -0.12 | -3.00 | 1.87 | 80.rev | -0.28 | -2.66 | 2.19 | 66.2 | 5'-truncated versions of the gene for tRNAPro[UGG] (codons recognized: CCR) in MED4 and SS120 |
| 1 | 106 | -0.27 | -23.06 | 2.66 | 106.rev | 0.49 | -14.18 | 3.22 | 0.0 | |
| 1 | 151 | -0.26 | -74.08 | 5.04 | 151.rev | -0.20 | -81.24 | 4.95 | 0.0 | |
| 1 | 157 | -0.25 | -20.44 | 2.48 | 157.rev | 0.04 | -20.10 | 3.13 | 0.0 | |
| 1 | 34 | 0.08 | -58.40 | 4.20 | 34.rev | -0.24 | -58.93 | 4.35 | 0.0 | |
| 1 | 64 | -0.18 | -114.04 | 5.54 | 64.rev | -0.23 | -109.90 | 4.99 | 0.0 | |
| 1 | 55 | 0.54 | -39.55 | 3.87 | 55.rev | -0.22 | -35.57 | 3.86 | 0.0 | |
| 1 | 137 | 1.31 | -72.72 | 4.99 | 137.rev | -0.22 | -55.56 | 4.02 | 0.0 | |
| 2 | 97 | -0.05 | -5.73 | 2.25 | 97.rev | -0.21 | -5.52 | 2.52 | 81.5 | |
| 1 | 284 | -0.21 | -16.69 | 2.86 | 284.rev | 1.03 | -11.32 | 2.45 | 0.0 | |
| 1 | 232 | 0.19 | -18.92 | 3.05 | 232.rev | -0.20 | -19.65 | 3.43 | 0.0 | |
| 1 | 304 | -0.08 | -59.89 | 4.38 | 304.rev | -0.18 | -54.08 | 3.86 | 0.0 | |
| 1 | 70 | 0.96 | -59.47 | 4.44 | 70.rev | -0.17 | -73.46 | 4.35 | 0.0 | |
| 1 | 135 | 0.01 | -111.29 | 5.35 | 135.rev | -0.16 | -111.43 | 4.69 | 0.0 | |
| 1 | 8 | 0.69 | -82.67 | 4.55 | 8.rev | -0.14 | -78.84 | 5.14 | 0.0 | |
| 1 | 147 | 0.53 | -59.86 | 4.73 | 147.rev | -0.12 | -70.48 | 4.52 | 0.0 | |
| 1 | 136 | 0.79 | -64.64 | 4.53 | 136.rev | -0.12 | -66.37 | 4.00 | 0.0 | |
| 1 | 85 | -0.11 | -19.97 | 2.80 | 85.rev | 1.51 | -22.48 | 2.96 | 0.0 | |
| 1 | 272 | 0.84 | -39.72 | 3.73 | 272.rev | -0.10 | -39.89 | 3.79 | 0.0 | |
| 1 | 159 | -0.10 | -86.04 | 5.18 | 159.rev | 0.18 | -81.29 | 4.60 | 0.0 | |
| 1 | 122 | 0.35 | -54.72 | 3.86 | 122.rev | -0.09 | -47.14 | 3.77 | 0.0 | |
| 1 | 79 | 0.12 | -173.02 | 6.72 | 79.rev | -0.09 | -193.63 | 6.68 | 0.0 | |
| 1 | 243 | -0.08 | -56.07 | 4.29 | 243.rev | 1.64 | -56.43 | 4.61 | 0.0 | |
| 1 | 191 | 0.28 | -68.84 | 4.44 | 191.rev | -0.06 | -54.35 | 4.40 | 0.0 | |
| 1 | 172 | 0.37 | -73.98 | 4.86 | 172.rev | -0.04 | -69.61 | 4.69 | 0.0 | |
| 1 | 203 | -0.04 | -54.38 | 4.25 | 203.rev | 0.66 | -70.63 | 4.62 | 0.0 | |
| 1 | 38 | -0.03 | -28.35 | 3.42 | 38.rev | 0.29 | -26.24 | 3.21 | 0.0 | |
| 1 | 21 | -0.03 | -107.11 | 5.99 | 21.rev | 0.04 | -93.18 | 5.25 | 0.0 | |
| 1 | 43 | 0.44 | -55.21 | 4.24 | 43.rev | -0.02 | -45.12 | 3.96 | 0.0 | |
| 1 | 196 | -0.01 | -40.89 | 3.91 | 196.rev | 1.05 | -36.58 | 3.75 | 0.0 | |
| 1 | 73 | 0.00 | -130.93 | 6.39 | 73.rev | 0.52 | -139.43 | 5.56 | 0.0 | |
| 1 | 276 | 0.48 | -143.36 | 6.02 | 276.rev | 0.00 | -136.70 | 6.06 | 0.0 | |
| 1 | 168 | 1.65 | -43.86 | 3.80 | 168.rev | 0.01 | -41.78 | 3.66 | 0.0 | |
| 1 | 67 | 0.03 | -30.40 | 3.42 | 67.rev | 0.02 | -34.53 | 3.31 | 0.0 | |
| 1 | 146 | 1.20 | -24.22 | 3.39 | 146.rev | 0.02 | -28.32 | 4.12 | 0.0 | |
| 1 | 124 | 0.03 | -126.64 | 5.68 | 124.rev | 0.30 | -109.71 | 5.29 | 0.0 | |
| 1 | 188 | 0.74 | -47.71 | 3.55 | 188.rev | 0.04 | -60.52 | 4.14 | 0.0 | |
| 1 | 204 | 0.88 | -87.00 | 4.77 | 204.rev | 0.07 | -89.48 | 5.08 | 0.0 | |
| 1 | 308 | 0.24 | -102.26 | 5.52 | 308.rev | 0.10 | -89.70 | 5.20 | 0.0 | |
| 1 | 224 | 0.21 | -31.01 | 3.41 | 224.rev | 0.12 | -33.20 | 3.71 | 0.0 | |
| 1 | 111 | 0.15 | -124.35 | 5.82 | 111.rev | 1.15 | -102.97 | 5.66 | 0.0 | |
| 1 | 150 | 0.16 | -57.42 | 4.63 | 150.rev | 1.64 | -56.15 | 3.59 | 0.0 | |
| 1 | 149 | 1.63 | -55.59 | 4.10 | 149.rev | 0.17 | -44.59 | 3.88 | 0.0 | |
| 1 | 116 | 0.18 | -51.03 | 4.37 | 116.rev | 0.83 | -43.54 | 3.48 | 0.0 | |
| 1 | 179 | 0.18 | -126.41 | 5.39 | 179.rev | 0.37 | -136.74 | 5.83 | 0.0 | |
| 1 | 309 | 1.01 | -20.77 | 3.25 | 309.rev | 0.20 | -25.35 | 3.18 | 0.0 | |
| 1 | 264 | 0.97 | -54.12 | 3.99 | 264.rev | 0.22 | -54.86 | 4.78 | 0.0 | |
| 1 | 22 | 0.23 | -48.61 | 4.52 | 22.rev | 0.85 | -53.88 | 4.29 | 0.0 | |
| 1 | 139 | 1.08 | -37.21 | 3.97 | 139.rev | 0.23 | -28.73 | 3.18 | 0.0 | |
| 1 | 178 | 0.41 | -25.54 | 3.27 | 178.rev | 0.25 | -33.96 | 3.44 | 0.0 | |
| 1 | 200 | 0.26 | -43.08 | 4.11 | 200.rev | 0.51 | -44.21 | 3.35 | 0.0 | |
| 1 | 152 | 0.88 | -77.10 | 5.17 | 152.rev | 0.27 | -72.98 | 4.27 | 0.0 | |
| 1 | 154 | 0.61 | -66.73 | 4.16 | 154.rev | 0.27 | -53.13 | 3.96 | 0.0 | |
| 1 | 40 | 0.27 | -25.67 | 3.17 | 40.rev | 0.80 | -25.76 | 3.60 | 0.0 | |
| 1 | 23 | 0.28 | -74.74 | 4.60 | 23.rev | 1.66 | -56.49 | 4.33 | 0.0 | |
| 1 | 218 | 0.32 | -38.57 | 3.60 | 218.rev | 0.29 | -38.96 | 3.95 | 0.0 | |
| 1 | 72 | 0.31 | -158.81 | 6.07 | 72.rev | 0.90 | -150.57 | 6.13 | 0.0 | |
| 1 | 47 | 0.33 | -23.93 | 3.40 | 47.rev | 0.66 | -27.47 | 3.19 | 0.0 | |
| 1 | 56 | 0.64 | -33.63 | 3.24 | 56.rev | 0.34 | -27.89 | 3.00 | 0.0 | |
| 1 | 171 | 0.34 | -23.14 | 2.54 | 171.rev | 1.15 | -12.27 | 2.27 | 0.0 | |
| 1 | 1 | 0.35 | -18.00 | 2.67 | 1.rev | 0.44 | -17.83 | 3.38 | 0.0 | |
| 1 | 39 | 1.39 | -58.54 | 4.41 | 39.rev | 0.37 | -55.57 | 4.68 | 0.0 | |
| 2 | 251 | 0.68 | -12.09 | 2.80 | 251.rev | 0.37 | -12.40 | 2.82 | 74.7 | |
| 1 | 195 | 1.64 | -40.41 | 3.57 | 195.rev | 0.38 | -42.84 | 3.92 | 0.0 | |
| 1 | 220 | 0.72 | -74.67 | 4.74 | 220.rev | 0.39 | -82.80 | 4.70 | 0.0 | |
| 1 | 307 | 0.99 | -71.04 | 4.37 | 307.rev | 0.42 | -79.62 | 4.17 | 0.0 | |
| 1 | 177 | 1.20 | -96.28 | 4.77 | 177.rev | 0.43 | -105.19 | 4.45 | 0.0 | |
| 1 | 50 | 0.79 | -66.91 | 4.94 | 50.rev | 0.43 | -44.59 | 4.22 | 0.0 | |
| 1 | 141 | 0.66 | -32.00 | 3.05 | 141.rev | 0.46 | -26.13 | 3.20 | 0.0 | |
| 1 | 175 | 0.48 | -47.61 | 4.19 | 175.rev | 0.60 | -43.95 | 3.72 | 0.0 | |
| 1 | 14 | 1.33 | -79.09 | 4.88 | 14.rev | 0.52 | -71.71 | 4.39 | 0.0 | |
| 1 | 184 | 1.71 | -36.75 | 3.97 | 184.rev | 0.55 | -44.78 | 4.28 | 0.0 | |
| 1 | 170 | 0.66 | -20.98 | 2.85 | 170.rev | 0.57 | -22.79 | 3.43 | 0.0 | |
| 1 | 155 | 0.79 | -78.70 | 4.62 | 155.rev | 0.57 | -81.24 | 4.55 | 0.0 | |
| 1 | 140 | 0.71 | -68.83 | 4.39 | 140.rev | 0.57 | -60.20 | 4.61 | 0.0 | |
| 1 | 120 | 0.60 | -41.24 | 3.84 | 120.rev | 0.77 | -35.81 | 3.59 | 0.0 | |
| 1 | 125 | 0.62 | -59.87 | 4.96 | 125.rev | 0.81 | -67.83 | 4.55 | 0.0 | |
| 1 | 121 | 0.68 | -68.88 | 4.42 | 121.rev | 1.44 | -70.97 | 4.30 | 0.0 | |
| 1 | 158 | 1.48 | -52.99 | 3.89 | 158.rev | 0.68 | -42.90 | 3.85 | 0.0 | |
| 1 | 143 | 0.82 | -109.75 | 5.47 | 143.rev | 0.71 | -103.05 | 4.67 | 0.0 | |
| 1 | 105 | 1.06 | -67.47 | 4.79 | 105.rev | 0.77 | -66.09 | 4.59 | 0.0 | |
| 1 | 119 | 1.65 | -33.26 | 3.83 | 119.rev | 0.81 | -42.45 | 3.99 | 0.0 | |
| 1 | 35 | 0.90 | -44.93 | 3.33 | 35.rev | 0.84 | -52.59 | 4.24 | 0.0 | |
| 1 | 88 | 0.85 | -23.05 | 3.31 | 88.rev | 2.07 | -36.92 | 3.30 | 0.0 | |
| 1 | 233 | 0.85 | -23.04 | 3.66 | 233.rev | 1.55 | -17.82 | 2.79 | 0.0 | |
| 1 | 162 | 0.86 | -68.66 | 3.91 | 162.rev | 1.23 | -70.35 | 3.87 | 0.0 | |
| 1 | 221 | 0.94 | -24.96 | 3.01 | 221.rev | 1.31 | -21.34 | 3.29 | 0.0 | |
| 1 | 91 | 1.03 | -38.25 | 3.53 | 91.rev | 2.23 | -30.89 | 3.25 | 0.0 | |
| 1 | 130 | 1.11 | -42.56 | 3.90 | 130.rev | 1.03 | -40.36 | 3.97 | 0.0 | |
| 1 | 180 | 1.68 | -53.09 | 3.80 | 180.rev | 1.04 | -54.80 | 4.14 | 0.0 | |
| 1 | 163 | 1.16 | -25.70 | 3.62 | 163.rev | 1.08 | -22.78 | 2.64 | 0.0 | |
| 1 | 61 | 1.22 | -44.30 | 4.44 | 61.rev | 1.73 | -56.53 | 3.97 | 0.0 | |
| 1 | 161 | 1.33 | -76.25 | 5.48 | 161.rev | 1.23 | -75.46 | 5.45 | 0.0 | |
| 1 | 219 | 2.10 | -33.53 | 3.57 | 219.rev | 1.30 | -52.35 | 3.63 | 0.0 | |
| 1 | 197 | 1.31 | -40.94 | 4.08 | 197.rev | 1.77 | -33.32 | 3.77 | 0.0 | |
| 1 | 60 | 1.31 | -31.91 | 3.33 | 60.rev | 1.48 | -20.81 | 3.01 | 0.0 | |
| 1 | 128 | 1.69 | -36.08 | 3.53 | 128.rev | 1.79 | -34.18 | 3.44 | 0.0 | |
| 1 | 297 | 1.91 | -41.12 | 3.96 | 297.rev | 2.36 | -45.67 | 3.71 | 0.0 | |
| 1 | 173 | 2.63 | -356.31 | 8.94 | 173.rev | 2.37 | -341.70 | 8.90 | 0.0 | |