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publications:start [2018/05/26 10:02]
nils
publications:start [2018/12/28 13:29] (current)
nils
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-//Note that this publication list is automatically updated and therefore 
-may be incomplete or could contain papers which are not by ITB 
-authors. //  
 //Note that this publication list is automatically updated and therefore //Note that this publication list is automatically updated and therefore
 may be incomplete or could contain papers which are not by ITB may be incomplete or could contain papers which are not by ITB
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 === 2018 === === 2018 ===
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 +Leiron Ferrarese, Jean-Sébastien Jouhanneau, Michiel W H Remme, Jens Kremkow, Gergely Katona, Balázs Rózsa, Susanne Schreiber, James F A Poulet, 2018, Dendrite-Specific Amplification of Weak Synaptic Input during Network Activity In Vivo. Cell Rep, 24,  3455-3465.e5 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=30257207%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1016/​j.celrep.2018.08.088|(full text)]] ​
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 +Evert Bosdriesz, Anirudh Prahallad, Bertram Klinger, Anja Sieber, Astrid Bosma, René Bernards, Nils Blüthgen, Lodewyk F A Wessels, 2018, Comparative Network Reconstruction using mixed integer programming. Bioinformatics,​ 34,  i997-i1004 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=30423075%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1093/​bioinformatics/​bty616|(full text)]] ​
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 +Franziska Witzel, Nils Blüthgen, 2018, When More Is Less: Dual Phosphorylation Protects Signaling Off State against Overexpression. Biophys. J., 115,  1383-1392 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=30217381%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1016/​j.bpj.2018.08.019|(full text)]] ​
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 +Martina Michalikova,​ Michiel W H Remme, Richard Kempter, 2018, Extracellular waveforms reveal an axonal origin of spikelets in pyramidal neurons. J. Neurophysiol.,​ 120,  1484-1495 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29947587%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1152/​jn.00463.2017|(full text)]] ​
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 +Bharath Ananthasubramaniam,​ Axel Diernfellner,​ Michael Brunner, Hanspeter Herzel, 2018, Ultradian Rhythms in the Transcriptome of Neurospora crassa. iScience, 9,  475-486 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=30472532%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1016/​j.isci.2018.11.012|(full text)]] ​
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 Rukeia El-Athman, Angela Relógio, 2018, Escaping Circadian Regulation: An Emerging Hallmark of Cancer? Cell Syst, 6,  266-267 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29596780%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1016/​j.cels.2018.03.006|(full text)]] ​ Rukeia El-Athman, Angela Relógio, 2018, Escaping Circadian Regulation: An Emerging Hallmark of Cancer? Cell Syst, 6,  266-267 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29596780%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1016/​j.cels.2018.03.006|(full text)]] ​
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 Roman Zug, Peter Hammerstein,​ 2018, Evolution of reproductive parasites with direct fitness benefits. Heredity (Edinb), 120,  266-281 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29234159%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1038/​s41437-017-0022-5|(full text)]] ​ Roman Zug, Peter Hammerstein,​ 2018, Evolution of reproductive parasites with direct fitness benefits. Heredity (Edinb), 120,  266-281 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29234159%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1038/​s41437-017-0022-5|(full text)]] ​
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 +J Patrick Pett, Matthew Kondoff, Grigory Bordyugov, Achim Kramer, Hanspeter Herzel, 2018, Co-existing feedback loops generate tissue-specific circadian rhythms. Life Sci Alliance, 1,  e201800078 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=30456356%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.26508/​lsa.201800078|(full text)]] ​
  
  
 Christopher T Monk, Matthieu Barbier, Pawel Romanczuk, James R Watson, Josep Alós, Shinnosuke Nakayama, Daniel I Rubenstein, Simon A Levin, Robert Arlinghaus, 2018, How ecology shapes exploitation:​ a framework to predict the behavioural response of human and animal foragers along exploration-exploitation trade-offs. Ecol. Lett., 21,  779-793 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29611278%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1111/​ele.12949|(full text)]] ​ Christopher T Monk, Matthieu Barbier, Pawel Romanczuk, James R Watson, Josep Alós, Shinnosuke Nakayama, Daniel I Rubenstein, Simon A Levin, Robert Arlinghaus, 2018, How ecology shapes exploitation:​ a framework to predict the behavioural response of human and animal foragers along exploration-exploitation trade-offs. Ecol. Lett., 21,  779-793 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29611278%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1111/​ele.12949|(full text)]] ​
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 +Mónica Abreu, Alireza Basti, Nikolai Genov, Gianluigi Mazzoccoli, Angela Relógio, 2018, The reciprocal interplay between TNFα and the circadian clock impacts on cell proliferation and migration in Hodgkin lymphoma cells. Sci Rep, 8,  11474  [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=30065253%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1038/​s41598-018-29847-z|(full text)]] ​
  
  
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-Marjan FaiziTomáš ZavrelCristina LoureiroJan Cerveny, Ralf Steuer, 2018, A model of optimal protein allocation during phototrophic growthBioSystems, ,    [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29476802%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1016/​j.biosystems.2018.02.004|(full text)]] ​+Luise FuhrRukeia El-AthmanRosella ScrimaOlga Cela, Annalucia Carbone, Henning Knoop, Yin Li, Karen Hoffmann, Mikko O Laukkanen, Francesco Corcione, Ralf Steuer, Thomas F Meyer, Gianluigi Mazzoccoli, Nazzareno Capitanio, Angela Relógio, 2018, The Circadian Clock Regulates Metabolic Phenotype Rewiring Via HKDC1 and Modulates Tumor Progression and Drug Response in Colorectal CancerEBioMedicine33 ​105-121  ​[[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=30005951%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1016/​j.ebiom.2018.07.002|(full text)]] ​
  
  
-José R DonosoDietmar SchmitzNikolaus Maier, Richard Kempter, 2018, Hippocampal ripple oscillations and inhibition-first network models: Frequency dynamics and response to GABA modulators. J. Neurosci., ,    [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29453207%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1523/JNEUROSCI.0188-17.2018|(full text)]] ​+Rukeia El-AthmanLuise FuhrAngela Relógio, 2018, A Systems-Level Analysis Reveals Circadian Regulation of Splicing in Colorectal CancerEBioMedicine33 ​68-81  ​[[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29936137%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1016/j.ebiom.2018.06.012|(full text)]] ​
  
  
 Christoph Schmal, Erik D Herzog, Hanspeter Herzel, 2018, Measuring Relative Coupling Strength in Circadian Systems. J. Biol. Rhythms, 33,  84-98  [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29219034%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1177/​0748730417740467|(full text)]] ​ Christoph Schmal, Erik D Herzog, Hanspeter Herzel, 2018, Measuring Relative Coupling Strength in Circadian Systems. J. Biol. Rhythms, 33,  84-98  [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29219034%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1177/​0748730417740467|(full text)]] ​
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 +Gina Polo, Carlos Mera Acosta, Marcelo B Labruna, Fernando Ferreira, Dirk Brockmann, 2018, Hosts mobility and spatial spread of Rickettsia rickettsii. PLoS Comput. Biol., 14,  e1006636 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=30586381%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1371/​journal.pcbi.1006636|(full text)]] ​
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 +Michiel W H Remme, John Rinzel, Susanne Schreiber, 2018, Function and energy consumption constrain neuronal biophysics in a canonical computation:​ Coincidence detection. PLoS Comput. Biol., 14,  e1006612 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=30521528%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1371/​journal.pcbi.1006612|(full text)]] ​
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 +Mathurin Dorel, Bertram Klinger, Torsten Gross, Anja Sieber, Anirudh Prahallad, Evert Bosdriesz, Lodewyk F A Wessels, Nils Blüthgen, 2018, Modelling signalling networks from perturbation data. Bioinformatics,​ 34,  4079-4086 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29931053%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1093/​bioinformatics/​bty473|(full text)]] ​
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 +Isao T Tokuda, Daisuke Ono, Sato Honma, Ken-Ichi Honma, Hanspeter Herzel, 2018, Coherency of circadian rhythms in the SCN is governed by the interplay of two coupling factors. PLoS Comput. Biol., 14,  e1006607 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=30532130%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1371/​journal.pcbi.1006607|(full text)]] ​
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 +André Holzbecher, Richard Kempter, 2018, Interneuronal gap junctions increase synchrony and robustness of hippocampal ripple oscillations. Eur. J. Neurosci., 48,  3446-3465 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=30414336%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1111/​ejn.14267|(full text)]] ​
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 +Nicole Wittenbrink,​ Bharath Ananthasubramaniam,​ Mirjam Münch, Barbara Koller, Bert Maier, Charlotte Weschke, Frederik Bes, Jan de Zeeuw, Claudia Nowozin, Amely Wahnschaffe,​ Sophia Wisniewski, Mandy Zaleska, Osnat Bartok, Reut Ashwal-Fluss,​ Hedwig Lammert, Hanspeter Herzel, Michael Hummel, Sebastian Kadener, Dieter Kunz, Achim Kramer, 2018, High-accuracy determination of internal circadian time from a single blood sample. J. Clin. Invest., 128,  3826-3839 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29953415%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1172/​JCI120874|(full text)]] ​
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 +E Besray Unal, Christina Kiel, Hannah Benisty, Andrew Campbell, Karen Pickering, Nils Blüthgen, Owen J Sansom, Luis Serrano, 2018, Systems level expression correlation of Ras GTPase regulators. Cell Commun. Signal, 16,  46  [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=30111366%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1186/​s12964-018-0256-8|(full text)]] ​
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 +David Bierbach, Tim Landgraf, Pawel Romanczuk, Juliane Lukas, Hai Nguyen, Max Wolf, Jens Krause, 2018, Using a robotic fish to investigate individual differences in social responsiveness in the guppy. R Soc Open Sci, 5,  181026 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=30225087%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1098/​rsos.181026|(full text)]] ​
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 +Paula T Kuokkanen, Go Ashida, Anna Kraemer, Thomas McColgan, Kazuo Funabiki, Hermann Wagner, Christine Köppl, Catherine E Carr, Richard Kempter, 2018, Contribution of action potentials to the extracellular field potential in the nucleus laminaris of barn owl. J. Neurophysiol.,​ 119,  1422-1436 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29357463%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1152/​jn.00175.2017|(full text)]] ​
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 +Bertram Klinger, Nils Blüthgen, 2018, Reverse engineering gene regulatory networks by modular response analysis - a benchmark. Essays Biochem., 62,  535-547 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=30315094%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1042/​EBC20180012|(full text)]] ​
  
  
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 Michael Schubert, Bertram Klinger, Martina Klünemann, Anja Sieber, Florian Uhlitz, Sascha Sauer, Mathew J Garnett, Nils Blüthgen, Julio Saez-Rodriguez,​ 2018, Perturbation-response genes reveal signaling footprints in cancer gene expression. Nat Commun, 9,  20  [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29295995%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1038/​s41467-017-02391-6|(full text)]] ​ Michael Schubert, Bertram Klinger, Martina Klünemann, Anja Sieber, Florian Uhlitz, Sascha Sauer, Mathew J Garnett, Nils Blüthgen, Julio Saez-Rodriguez,​ 2018, Perturbation-response genes reveal signaling footprints in cancer gene expression. Nat Commun, 9,  20  [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29295995%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1038/​s41467-017-02391-6|(full text)]] ​
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 +Stefano Castellana, Tommaso Mazza, Daniele Capocefalo, Nikolai Genov, Tommaso Biagini, Caterina Fusilli, Felix Scholkmann, Angela Relógio, John B Hogenesch, Gianluigi Mazzoccoli, 2018, Systematic Analysis of Mouse Genome Reveals Distinct Evolutionary and Functional Properties Among Circadian and Ultradian Genes. Front Physiol, 9,  1178  [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=30190679%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.3389/​fphys.2018.01178|(full text)]] ​
  
  
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 Kevin Thurley, Christopher Herbst, Felix Wesener, Barbara Koller, Thomas Wallach, Bert Maier, Achim Kramer, Pål O Westermark, 2017, Principles for circadian orchestration of metabolic pathways. Proc. Natl. Acad. Sci. U.S.A., 114,  1572-1577 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=28159888%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1073/​pnas.1613103114|(full text)]] ​ Kevin Thurley, Christopher Herbst, Felix Wesener, Barbara Koller, Thomas Wallach, Bert Maier, Achim Kramer, Pål O Westermark, 2017, Principles for circadian orchestration of metabolic pathways. Proc. Natl. Acad. Sci. U.S.A., 114,  1572-1577 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=28159888%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1073/​pnas.1613103114|(full text)]] ​
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-Paula T Kuokkanen, Go Ashida, Anna Kraemer, Thomas McColgan, Kazuo Funabiki, Hermann Wagner, Christine Köppl, Catherine E Carr, Richard Kempter, 2017, Contribution of action potentials to the extracellular field potential in the nucleus laminaris of barn owl. J. Neurophysiol.,​ ,    [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=29357463%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1152/​jn.00175.2017|(full text)]] ​ 
  
  
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 Lucas Böttcher, Olivia Woolley-Meza,​ Dirk Brockmann, 2017, Temporal dynamics of online petitions. PLoS ONE, 12,  e0178062 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=28542492%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1371/​journal.pone.0178062|(full text)]] ​ Lucas Böttcher, Olivia Woolley-Meza,​ Dirk Brockmann, 2017, Temporal dynamics of online petitions. PLoS ONE, 12,  e0178062 ​ [[http://​www.ncbi.nlm.nih.gov/​pubmed/?​term=28542492%5Buid%5D|(abstract)]] ​ [[http://​dx.doi.org/​10.1371/​journal.pone.0178062|(full text)]] ​
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 === 2016 === === 2016 ===