Curiosity is the one thing invincible in Nature.

Freya Stark (1893 - 1993)

Dr. Janina Hesse

Theoretical Biologist · Dynamical Systems · MSH Hamburg

Theoretical biology is the art of advancing biological knowledge with mathematics, physics and computer science. I unify and simplify biological facts through the logic of a theoretical concept for greater understanding and predictability. I am interested in complex systems and the constituting communication, in particular interacting and information-processing biological systems, and their development throughout evolution.


Research interests

Information processing in organisms happens on various levels, from gene regulatory networks, over the nervous system, to the holobiont formed by animals and their symbiotic microbes. To relate these levels, I use a theoretical approach combining data analysis, mathematical modelling and numerical simulations. Symbiotic interactions across species borders shape all life, and even who we are -- for example, emotions and mood seem to be influenced by our gut bacteria. One of my prime research questions is how the complex interplay between microbial symbionts and animal host is orchestrated. My focus thereby lies on interactions with a positive effect on the microbes, potentially mediated by nerve cells.

During my studies in Paris, I became interested in the brain as complex system. After research internships in San Diego, Paris and Dresden, I completed my PhD in theoretical biology at Humboldt-Universität zu Berlin 2017 with Susanne Schreiber, investigating how neuronal excitability and morphology influences information transmission in the brain. I have extended the project by experimental confirmation of our hypothesis and computational studies on neuronal networks.

The circadian clock oscillates as the rhythmic change of molecular and physiological characteristics with day and night since its development more than two billion years ago. I am currently affiliated with Angela Relógio, where we adapted a model of the cellular genetic network to experimentally observed oscillations in order to personalize medical interventions, and relate the experimental observations to clinically relevant parameters.


Selected publications

  • Temperature elevations can induce switches to homoclinic action potentials that alter neural encoding and synchronization.

    Hesse, Schleimer, Maier, et al. Nature Communications 13:3934, 2022.

  • A mathematical model of the circadian clock and drug pharmacology to optimize irinotecan administration timing in colorectal cancer.

    Hesse, Martinelli, Aboumanify, et al. Computational and Structural Biotechnology Journal 19:5170-5183, 2022.

  • Long-term continuous positive airway pressure treatment ameliorates biological clock disruptions in obstructive sleep apnea.

    Gaspar, Hesse, Yalçin, et al. EBioMedicine 65:103248, 2021.

  • Diurnal variations in the expression of core-clock genes correlate with resting muscle properties and predict fluctuations in exercise performance across the day.

    Basti, Yalçin, Herms, Hesse, et al. BMJ open sport & exercise medicine 7(1):e000876, 2021.

  • Firing statistics in the bistable regime of neurons with homoclinic spike generation.

    Schleimer, Hesse, Contreras, Schreiber. Physical Review E 103:012407, 2021.

  • An Optimal Time for Treatment-Predicting Circadian Time by Machine Learning and Mathematical Modelling.

    Hesse, Malhan, Yalҫin, et al. Cancers 12(11):3103, 2020.

  • How to correctly quantify neuronal phase-response curves from noisy recordings.

    Hesse, Schreiber. Journal of Computational Neuroscience 47(1):17-30, 2019.

  • The concerns of the young protesters are justified: A statement by Scientists for Future concerning the protests for more climate protection.

    Hagedorn, Loew, Seneviratne, Lucht, Beck, Hesse, et al. GAIA 28(2):79-87, 2019.

  • ...

    Qualitative changes in phase-response curve and synchronization at the saddle-node-loop bifurcation.

    Hesse, Schleimer, Schreiber. Physical Review E 95:052203, 2017.

  • ...

    Externalization of neuronal somata as an evolutionary strategy for energy economization.

    Hesse, Schreiber. Current Biology 25(8):R324, 2015.

  • ...

    Self-organized criticality as a fundamental property of neural systems.

    Hesse, Gross. Frontiers in Systems Neuroscience 8:166, 2014.


Research experience

Circadian systems biology · MSH Hamburg & Charité Berlin

Modelling of the molecular core clock with gene networks | Personalization of cancer treatment time | Linking genetic circadian rhythms to physiology in health and disease.

since 2020

Computational neurosciences · Humboldt-University Berlin

Information flow in evolutionary morphologies | Phase response curves in bistable dynamics | Local spike initiation impacting global network behavior.

2011 - 2019

Dynamical networks · Max Planck Institute for the Physics of Complex Systems Dresden

Self-organized criticality in biology.

2011

Mathematical neuroscience · Ecole Normale Supérieure Paris

Bistable dynamics in zebrafish vision.

2010

Computational neurobiology · Salk Institute San Diego

Gap junctions | Electrode effects.

2009

Education

PhD · Humboldt-University Berlin

Theoretical Biology
2017

Diploma · École Normale Supérieure Paris

Physics & Cognitive Sciences
2011

Master of Science · University Pierre-et-Marie-Curie Paris

Theoretical Physics of Complex Systems
2010

Vordiplom (intermediate diploma) · Goethe University Frankfurt

Mathematics
2007

Teaching & Outreach

Teaching · Mathematics for Engineers I & II

2019 - 2020
2019

Teaching · Summer school course instructor

2013 & 2016
2015

Talk · Science Slam @ SO64 Berlin

2015