This is an old revision of the document!
Good news, everyone
Upcoming SpeakersPast Seminars
Organisation
Meeting Alumni
Upcoming Speakers
Predicted Date [*] | Name | Group | Location |
---|---|---|---|
2019-09-24 | Relógio, Angela (PI) | Systems Biology of Cancer | ITB-House4 |
2019-10-01 | Bluethgen, Nils (PI) | Systems Biology of Molecular Networks | ITB-House4 |
2019-10-08 | Meisig, Johannes | Systems Biology of Molecular Networks | ITB-House4 |
2019-10-15 | Evangelista, Roberta | Theoretical Neuroscience | ITB-House4 |
2019-10-22 | Reifenstein, Eric | Computational Neurophysiology | ITB-House4 |
2019-10-29 | Winkelhöfer, Karin | ITB | ITB-Inv110 |
2019-11-05 | Hammerstein, Peter (PI) | Evolution of Organismic Systems | ITB-House4 |
2019-11-12 | Schmal, Christoph | Molecular and Cellular Evolution | ITB-House4 |
2019-11-19 | Poel, Winnie | Collective Information Processing | ITB-House4 |
2019-11-26 | Steuer, Ralf (PI) | Metabolic Networks | ITB-Inv110 |
2019-12-03 | König, Matthias (PI) | Systems Biology of Liver | ITB-Inv110 |
2019-12-10 | Pfeiffer, Paul | Computational Neurophysiology | ITB-House4 |
2019-12-17 | Romanczuk, Pawel (PI) | Collective Information Processing | ITB-House4 |
2019-12-24 | Rose, Pia | Computational Neurophysiology | ITB-House4 |
2019-12-31 | Contreras, Susana | Computational Neurophysiology | ITB-House4 |
2020-01-07 | Thurley, Kevin (PI) | Systems Biology of Inflammation | ITB-Inv110 |
2020-01-14 | Kuokkanen, Paula | Theoretical Neuroscience | ITB-Inv110 |
2020-01-21 | Genov, Nikolai | Systems Biology of Cancer | ITB-House4 |
2020-01-28 | Schieferstein, Natalie | Theoretical Neuroscience | ITB-House4 |
2020-02-04 | D'Albis, Tiziano | Theoretical Neuroscience | ITB-Inv110 |
2020-02-11 | Burt, Phillipp | Systems Biology of Inflammation | ITB-Inv110 |
2020-02-18 | Faizi, Marjan | Metabolic Networks | ITB-House4 |
2020-02-25 | Schuppner, Rike-Benjamin | System Administration | ITB-Inv110 |
2020-03-03 | Klamser, Pascal | Collective Information Processing | ITB-House4 |
2020-03-10 | Borek, Zuzanna | Systems Biology of Inflammation | ITB-Inv110 |
2020-03-17 | Upadhyay, Abhishek | Molecular and Cellular Evolution | ITB-Inv110 |
2020-03-24 | Basti, Alireza | Systems Biology of Cancer | ITB-House4 |
2020-03-31 | Uhlitz, Florian | Systems Biology of Molecular Networks | ITB-House4 |
2020-04-07 | Astaburuaga, Rosario | Systems Biology of Cancer | ITB-Inv110 |
2020-04-14 | Ananthasubramaniam, Bharath | Molecular and Cellular Evolution | ITB-House4 |
2020-04-21 | Wilkins, Adams | ITB-Inv110 | |
2020-04-28 | Carrillo-Bustamante, Paola | Vector Biology, MPI | ITB-House4 |
2020-05-05 | Schreiber, Susanne (PI) | Computational Neurophysiology | ITB-House4 |
2020-05-12 | Brockmann, Dirk (PI) | Research on Complex Systems | ITB-Inv110 |
2020-05-19 | Lauterbach, Elvira & Winkelhöfer Karin | ITB Administration | ITB-House4 |
2020-05-26 | Benary, Manuela | Systems Biology of Molecular Networks | ITB-House4 |
2020-06-02 | Sell, Thomas | Systems Biology of Molecular Networks | ITB-House4 |
2020-06-09 | Lauterbach, Elvira | Administration | ITB-Inv110 |
2020-06-16 | Gross, Torsten | Systems Biology of Molecular Networks | ITB-Inv110 |
2020-06-23 | Herzel, Hanspeter (PI) | Molecular and Cellular Evolution | ITB-House4 |
2020-06-30 | Behbood, Mahraz | Computational Neurophysiology | ITB-House4 |
2020-07-07 | Schleimer, Jan-Hendrik | Computational Neurophysiology | ITB-Inv110 |
2020-07-14 | Klinger, Bertram | Systems Biology of Molecular Networks | ITB-Inv110 |
2020-07-21 | Grzegorzewski, Jan | Systems Biology Of Liver | ITB-House4 |
2020-07-28 | El-Athman, Rukeia | Systems Biology of Cancer | ITB-House4 |
2020-08-04 | Del Olmo, Marta | Molecular and Cellular Evolution | ITB-House4 |
2020-08-11 | Li, Yin | Systems Biology of Cancer | ITB-House4 |
holidays
package.
Holiday breaks like over Christmas and local Berlin holidays are not accounted for and can result in changes of the final date of your
presentation.
Past Seminars
Date | Speaker | Title | Slides | |
---|---|---|---|---|
2019-09-17 |
Li, Yin Systems Biology of Cancer |
The bidirectional interplay between the circadian clock and the TGFβ/SMAD4 pathway modulates metastasis and drug response in pancreatic cancer. | ||
2019-09-10 |
Del Olmo, Marta Molecular and Cellular Evolution |
Modelling Circadian Redox Oscillations | ||
2019-09-03 |
El-Athman, Rukeia Systems Biology of Cancer |
A Landscape of Circadian and Ultradian Splicing Events in Mammalian Tissues | ||
2019-07-09 |
Grzegorzewski, Jan Systems Biology Of Liver |
A Pharmacokinetics Database for Individualized and Stratified Computational Modelling | ||
2019-07-02 |
Klinger, Bertram Systems Biology of Molecular Networks |
Mass-spec methods for phospho-protein detection | ||
2019-06-25 |
Behbood, Mahraz Computational Neurophysiology |
Activity-Induced Changes in Ion Concentrations Switch Cellular Dynamics in Favor of the Brain's Rhythmic Activities (A Fast Slow Bifurcation Analysis) | ||
2019-06-18 |
Herzel, Hanspeter (PI) Molecular and Cellular Evolution |
Nonlinear dynamics of the voice | ||
2019-06-04 |
Gross, Torsten Systems Biology of Molecular Networks |
Robust network inference using response logic | ||
2019-05-28 |
Clara Jongen Research on Complex Systems |
Context specific role of airports in global disease dynamics | ||
2019-05-21 |
König, Matthias (PI) Systems Biology of Liver |
Reproducible research | ||
2019-05-14 |
Sell, Thomas Systems Biology of Molecular Networks |
Signalling cell by cell with mass cytometry | ||
2019-05-07 |
Benary, Manuela Systems Biology of Molecular Networks |
Precision oncology using big data – How to predict relevant targets and therapies? | ||
2019-04-30 |
Pett, Patrick Molecular and Cellular Evolution |
Defense tissue specific circadian clock | ||
2019-04-23 |
Sojo, Víctor |
1+1=3: Membranes, proteins, and the intertwining branches of the Tree of Life | ||
2019-04-16 |
Lauterbach, Elvira & Winkelhöfer Karin ITB Administration |
Security information and instructions | ||
2019-04-02 |
Schreiber, Susanne (PI) Computational Neurophysiology |
Synchronization with a new type of spike | ||
2019-03-24 |
Carrillo-Bustamante, Paola Vector Biology, MPI |
How can we understand the transmission and evolution of malaria? Insights from an in-silico individual-based model | ||
2019-03-12 |
Ananthasubramaniam, Bharath Molecular and Cellular Evolution |
Ultradian rhythms in the transcriptome of Neurospora crassa | http://itb.biologie.hu-berlin.de/~bharath/ | |
2019-03-05 |
Astaburuaga, Rosario Systems Biology of Cancer |
Mathematical modeling of lysosomal ion homeostasis | ||
2019-02-26 |
Uhlitz, Florian Systems Biology of Molecular Networks |
Single Cell RNA-Seq of Colorectal Cancer Organoids | ||
2019-02-19 |
Basti, Alireza Systems Biology of Cancer |
In vivo and in vitro investigation of the circadian clock in human colorectal cancer | ||
2019-02-12 |
Upadhyay, Abhishek Molecular and Cellular Evolution |
A degradation switch enables rhythm in a Neurospora clock model | ||
2019-02-05 |
Klamser, Pascal Collective Information Processing |
Uncommon Risk-Behavior Evolution Due to Size-Selective Harvesting in Zebrafish | ||
2019-01-29 |
Schuppner, Rike-Benjamin System Administration |
Frequently asked questions | https://itbgit.biologie.hu-berlin.de/schuppner/itb-infrastructure-2019/blob/master/ITB%20Meeting%202019.pdf | |
2019-01-22 |
Faizi, Marjan Metabolic Networks |
Modeling a self-adapting system of phototrophic growth | ||
2019-01-15 |
D'Albis, Tiziano Theoretical Neuroscience |
The origin of grid-cell patterns | ||
2019-01-08 |
Schieferstein, Natalie Theoretical Neuroscience |
Mechanisms of phase precession in the hippocampal formation | ||
2018-12-11 |
Genov, Nikolai Systems Biology of Cancer |
Time-dependent Isoform Expression Changes | ||
2018-12-04 |
Kuokkanen, Paula Theoretical Neuroscience |
From single cells to extracellular field potentials and EEG | ||
2018-11-27 |
Burt, Phillipp Systems Biology of Inflammation |
Response-time modeling of T helper cell differentiation | ||
2018-11-20 |
Thurley, Kevin (PI) Systems Biology of Inflammation |
Modeling cell-cell communication dynamics in inflammatory responses | ||
2018-11-13 |
Contreras, Susana Computational Neurophysiology |
An activity-induced transition in single-cell spiking dynamics | ||
2018-11-06 |
Rose, Pia Computational Neurophysiology |
Neurobiology without neurons | ||
2018-10-30 |
Romanczuk, Pawel (PI) Collective Information Processing |
Less is more - Limited attention facilitates collective migration in complex environments | ||
2018-10-23 |
Pfeiffer, Paul Computational Neurophysiology |
Short term memory - Bistable neurons and reverberatory networks | ||
2018-10-16 |
König, Matthias (PI) Systems Biology of Liver |
Modelling liver function tests - LiMAx | ||
2018-10-09 |
Steuer, Ralf (PI) Metabolic Networks |
Modelling Phototrophic Growth | ||
2018-10-02 |
Carlos Aguilar (PI) |
Mapping the fungal web: Ecosystem functions to inspire human-made networks | ||
2018-09-18 |
Schmal, Christoph Molecular and Cellular Evolution |
Dissociation of Intracellular Feedback Loops in the Mammalian Circadian Clock | ||
2018-09-11 |
Rydenfelt, Mattias Systems Biology of Molecular Networks |
None | ||
2018-07-17 |
Hammerstein, Peter (PI) Evolution of Organismic Systems |
Celebrating the end of the semester with a look at Australian outback adventures | ||
2018-07-10 |
Winkelhöfer, Karin ITB |
Berlin waste water management | ||
2018-07-03 |
Reifenstein, Eric Computational Neurophysiology |
Neuronal mechanisms of sequence learning | ||
2018-06-26 |
Genov, Nikolai Systems Biology of Cancer |
|||
2018-06-19 |
Evangelista, Roberta Theoretical Neuroscience |
A 3-populations spiking model for the generation of hippocampal sharp wave-ripple oscillations | ||
2018-06-12 |
Meisig, Johannes Systems Biology of Molecular Networks |
Reconstructing gene regulatory networks in stem cells | ||
2018-06-05 |
Bluethgen, Nils (PI) Systems Biology of Molecular Networks |
Colon cancer - cell by cell | ||
2018-05-28 |
Li, Yin Systems Biology of Cancer |
Characterization of circadian clock in mammalian cancer cells | ||
2018-05-21 |
Del Olmo, Marta Molecular and Cellular Evolution |
Circadian redox system | ||
2018-05-15 |
El-Athman, Rukeia Systems Biology of Cancer |
Analysis of the circadian splicosome | ||
2018-05-08 |
Grzegorzewski, Janek |
Virus Classification by Pattern Recognition applied on Peptide-Virus Interactions | ||
2018-04-24 |
Klinger, Bertram Systems Biology of Molecular Networks |
Studying oncogenic effects of RAS | ||
2018-04-17 |
Holzbecher, André Theoretical Neuroscience |
Interneuronal gap junctions increase the synchrony of hippocampal ripple oscillations | ||
2018-03-27 |
Relógio, Angela (PI) Systems Biology of Cancer |
A brief history of time | ||
2018-03-20 |
Herzel, Hanspeter (PI) Molecular and Cellular Evolution |
The Choroid Plexus is an Important Circadian Clock Component | ||
2018-03-13 |
Schleimer, Jan-Hendrik Computational Neurophysiology |
It's: Monty Python's Flying Circuit | https://github.com/matthiaskoenig/itbmeeting/raw/master/slides/2018-03-13_schleimer.pdf | |
2018-03-06 |
Gross, Torsten Systems Biology of Molecular Networks |
A signalling network model predicts differential drug response of PIK3 mutants in a colon cancer cell line. | wiki/members/grosstor | |
2018-02-27 |
König, Matthias (PI) Systems Biology of Liver |
A Quick Introduction to Version Control with Git | ||
2018-02-20 |
Clara Jongen Research on Complex Systems |
Defining the scope: A context specific approach to identifying key airports during a pandemic. | ||
2018-02-13 |
Sell, Thomas Systems Biology of Molecular Networks |
What is mass cytometry? | ||
2018-01-30 |
Witzel, Franziska Systems Biology of Molecular Networks |
Integral feedback control in Erk1/2 signalling | 2018-01-30_witzel.pdf | |
2018-01-23 |
Wilkins, Adams |
|||
2018-01-16 |
Upadhyay, Abhishek Molecular and Cellular Evolution |
Mathematical modeling of circadian clock in Neurospora crassa | ||
2018-01-09 |
Obermayer, Benedikt Bioinformatics Core Unit |
Global characterization of post-transcriptional gene regulation at the onset of neuronal differentiation | ||
2017-12-12 |
Uhlitz, Florian Systems Biology of Molecular Networks |
Single cell RNAseq of colorectal cancer | ||
2017-12-05 |
Basti, Alireza Systems Biology of Cancer |
Gene editing via CRISPR/CAS9 | ||
2017-11-28 |
Ünal, Evrim Besray Systems Biology of Molecular Networks |
Systems level expression correlation of Ras-like GTPase regulators and dysregulation in cancer. | ||
2017-11-21 |
Ananthasubramaniam, Bharath Molecular and Cellular Evolution |
BodyTime: A new diagnostic tool to assess the internal clock | ||
2017-11-14 |
Schuppner, Rike-Benjamin System Administration |
Technical Depth - Computers at the ITB | http://docs.itb.pri/TechnicalDepth/assets/player/KeynoteDHTMLPlayer.html#1 | |
2017-11-07 |
Klamser, Pascal Collective Information Processing |
Collective Performance in Presence of a Predator: An inhomogeneous, local field. | ||
2017-10-24 |
Faizi, Marjan Metabolic Networks |
Cyanobacterial growth with intrinsic feedback | ||
2017-10-17 |
Schieferstein, Natalie Theoretical Neuroscience |
Mechanisms of phase precession in the hippocampal formation. | ||
2017-10-10 |
D'Albis, Tiziano Theoretical Neuroscience |
The origin of grid-cell patterns. | ||
2017-09-26 |
Kuokkanen, Paula Theoretical Neuroscience |
Decomposing the neurophonic in the NL of the Barn Owl. | ||
2017-09-19 |
Contreras, Susana Computational Neurophysiology |
The wonderlust gene | ||
2017-09-05 |
Rose, Pia Computational Neurophysiology |
The influence of temperature on neuronal processing | ||
2017-07-18 |
Paul Pfeiffer |
Test-driven development | ||
2017-07-11 |
König, Matthias (PI) Systems Biology of Liver |
Computational modeling of liver function tests: Why you need more coffee when you smoke | ||
2017-07-04 |
Romanczuk, Pawel (PI) Collective Information Processing |
Collective Information Processing: How critical is it to be critical? | ||
2017-06-27 |
Karin Winklhöfer und Elvira Lauterbach |
ITB Symposium Organization Meeting | ||
2017-06-20 |
Steuer, Ralf (PI) Metabolic Networks |
The protein economy of growth: How to multiply yourself in seven steps. | ||
2017-06-13 |
Schreiber, Susanne (PI) Computational Neurophysiology |
Cold-induced silencing of neuronal activity | ||
2017-06-06 |
Schmal, Christoph Molecular and Cellular Evolution |
Mammalian circadian clock - Network of coupled oscillators | ||
2017-05-30 |
Rydenfelt, Mattias Systems Biology of Molecular Networks |
Drug sensitivity in cancer cell lines | ||
2017-05-23 |
Remme, Michiel Computational Neurophysiology and Neuroscience |
The energetic cost of the brain | ||
2017-05-16 |
Schleimer, Jan-Hendrik Computational Neurophysiology |
|||
2017-05-09 |
Abreu, Mónica Systems Biology of Cancer |
Circadian analysis of the immune system | ||
2017-05-02 |
Reifenstein, Eric Computational Neurophysiology |
Sequence learning in rats and humans | ||
2017-04-25 |
Michalikova, Martina Theoretical Neuroscience |
Post-journal utopia & how to move there faster. | ||
2017-04-04 |
Genov, Nikolai Systems Biology of Cancer |
Ultradian rhythms are evolutionary more conserved and play key roles in vital cellular functions. | ||
2017-03-28 |
McColgan, Thomas Theoretical Neuroscience |
Report of the GPU modeling retreat | ||
2017-03-21 |
Meisig, Johannes Systems Biology of Molecular Networks |
Modeling gene expression in spontaneous and perturbed differentiation | ||
2017-03-14 |
Evangelista, Roberta Theoretical Neuroscience |
Bistable activation of CA3 interneurons can explain the generation of sharp wave-ripple oscillations | ||
2017-03-07 |
Kremkow, Jens Theoretical Neuroscience |
What causes a cortical action potential, in vivo? | ||
2017-02-28 |
El-Athman, Rukeia Systems Biology of Cancer |
Molecular Modelling of the Oligomeric Pore of the Tight Junction Protein Claudin-10b | ||
2017-02-14 |
Knoop, Henning Metabolic Networks |
Metabolic modeling of cyanobacteria | ||
2017-02-07 |
Klinger, Bertram Systems Biology of Molecular Networks |
The coffee ring effect | ||
2017-01-31 |
Holzbecher, André Theoretical Neuroscience |
Memory - how we remember places, and why electrical synapses might play a role in that | ||
2017-01-17 |
Herzel, Hanspeter (PI) Molecular and Cellular Evolution |
Modeling rhythms in cells, tissues, and organisms | 2017-01-17_herzel.pdf | |
2017-01-10 |
Hesse, Janina Computational Neurophysiology |
Trace your favorite drawings - getting around copy rights with inkscape | ||
2016-12-13 |
Gross, Torsten Systems Biology of Molecular Networks |
Finding patterns in perturbation data that reveal an underlying network | ||
2016-11-29 |
Fuhr, Luise Systems Biology of Cancer |
Clock-genes and mitochondrial respiratory activity: Evidence of a reciprocal interplay. | ||
2016-11-29 |
Bluethgen, Nils (PI) Systems Biology of Molecular Networks |
Noise in cancer | ||
2016-11-22 |
Baranov, Olga Research on Complex Systems |
Real world networks | ||
2016-11-08 |
Donoso, José R. Theoretical Neuroscience |
Microvision in cyanobacteria (http://dx.doi.org/10.7554/eLife.12620) | 2016-11-08_donoso.pdf | |
2016-11-01 |
Benary, Manuela Systems Biology of Molecular Networks |
Project proposal | ||
2016-10-25 |
Maier, Benjamin |
Flockworks: A class of dynamic network models for face-to-face interactions | ||
2016-10-18 |
Witzel, Franziska Systems Biology of Molecular Networks |
Oncogene-induced Senescence | 2016-10-18_witzel.pdf | |
2016-10-11 |
Bordyugov, Grischa Molecular and Cellular Evolution |
Programming with closures for fun and profit | 2016-10-11_bordyugov.pdf |
Organisation
If it is your turn at the ITB meeting, please prepare a short talk (15 min + 5 min discussion) that is related to your research (your own project or a very interesting finding of other groups). Please make sure that the video-projector and laptop are in place at 14:00. If you are scheduled for House 4 - the projector is already installed in the seminar room. If you are unable to give the talk at the date indicated, please find a replacement.
Titles for the talks should be sent until sunday to: Matthias König
Thank you for your effort to keep ITB a vital and exciting meeting point for theoretical and experimental biologists!
Meeting Alumni
Name | Group |
---|---|
Westermark, Pål (PI) | Systems Biology of Aging and the Circadian |
Wilmes, Katharina | Computational Neurophysiology |
Roemschied, Frederic | Computational Neurophysiology |
Chenkov, Nikolay | Theoretical Neuroscience |
Westermark, Stefanie | Metabolic Networks |
Lehmann, Robert | Celldeg.com |
Ruegen, Marco | Metabolic Networks |
Lueck, Sarah | Systems Biology of Aging and the Circadian Clock |
Knoop, Henning | Metabolic Networks |
Thaben, Paul | Systems Biology of Aging and the Circadian Clock |
Bordyugov, Grischa | Molecular and Cellular Evolution |
Zug, Roman | Evolution of Organismic Systems |
McColgan, Thomas | Theoretical Neuroscience |
Michalikova, Martina | Theoretical Neuroscience |
Fuhr, Luise | Systems Biology of Cancer |
Donoso, José R. | Theoretical Neuroscience |
Hesse, Janina | Computational Neurophysiology |
Ünal, Evrim Besray | Systems Biology of Molecular Networks |
Kremkow, Jens | Theoretical Neuroscience |
Abreu, Mónica | Systems Biology of Cancer |
Remme, Michiel | Computational Neurophysiology and Neuroscience |
Holzbecher, André | Theoretical Neuroscience |
Witzel, Franziska | Systems Biology of Molecular Networks |
Pett, Patrick | Molecular and Cellular Evolution |
Baranov, Olga | Research on Complex Systems |
Clara Jongen | Research on Complex Systems |
Rydenfelt, Mattias | Systems Biology of Molecular Networks |