members:steuer:publicationssteuer

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision		 Previous revision
Last revisionBoth sides next revision
members:steuer:publicationssteuer [2014/04/10 13:54] – steuermembers:steuer:publicationssteuer [2016/07/04 09:24] – steuer
Line 1: Line 1:
-==== Ralf Steuer − Publications ====+==== Metabolic Network Analysis − Publications ==== 
 + 
 +**Publications 2016** 
 + 
 +[46] Zavřel T, Knoop H, Steuer R, Jones PR, Červený J, Trtílek M. (2016) **[[http://www.ncbi.nlm.nih.gov/pubmed/ 26708481|A quantitative evaluation of ethylene production in the recombinant cyanobacterium Synechocystis sp. PCC 6803 harboring the ethylene-forming enzyme by membrane inlet mass spectrometry.]]**.  
 +Bioresour Technol. 202:142-51. doi: 10.1016/j.biortech.2015.11.062. 
 + 
 +**Publications 2015** 
 + 
 +[45] Muller S, Regensburger G, Steuer R.  (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/26614660|Resource allocation in metabolic networks: kinetic optimization and approximations by FBA.]]**.  
 +Biochem Soc Trans. 2015 Dec 1;43(6):1195-200. doi: 10.1042/BST20150156. Review. 
 + 
 +[44] Ruegen M, Bockmayr A, Steuer R.  (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/26496972|Elucidating temporal resource allocation and diurnal dynamics in phototrophic metabolism using conditional FBA]]**.  
 +Sci Rep. 2015 Oct 26;5:15247. doi: 10.1038/srep15247. 
 + 
 +[43] Erdrich P, Steuer R, Klamt S. (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/26286864|An algorithm for the reduction of genome-scale metabolic network models to meaningful core models.]]**.  
 +BMC Syst Biol. 2015 Aug 19;9:48. doi: 10.1186/s12918-015-0191-x. 
 + 
 +[42] Knoop H, Steuer R.  (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/25941672|A computational analysis of stoichiometric constraints and trade-offs in cyanobacterial biofuel production.]]**.  
 +Front Bioeng Biotechnol. 2015 Apr 20;3:47. doi: 10.3389/fbioe.2015.00047. eCollection 2015. 
 + 
 +[41] Klemke F, Baier A, Knoop H, Kern R, Jablonsky J, Beyer G, Volkmer T, Steuer R, Lockau W, Hagemann M. (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/25701735|Identification of the light-independent phosphoserine pathway as additional source for serine in the cyanobacterium Synechocystis sp. PCC 6803]]**.  
 +Microbiology. 2015 Feb 20. pii: mic.0.000055. doi: 10.1099/mic.0.000055. 
 + 
 + 
 +**Publications 2014** 
 + 
 +[40] Murabito E, Verma M, Bekker M, Bellomo D, Westerhoff HV, Teusink B, Steuer R. (2014)  
 +**[[http://www.ncbi.nlm.nih.gov/pubmed/25268481|Monte-Carlo modeling of the central carbon metabolism of Lactococcus lactis: insights into metabolic regulation]]**. 
 +PLoS One. 9(9):e106453.   
 + 
 +[39] Erdrich P, Knoop H, Steuer R, Klamt S. (2014) 
 +**[[http://www.ncbi.nlm.nih.gov/pubmed/25323065|Cyanobacterial biofuels: new insights and strain design strategies revealed by computational modeling]]**. 
 +Microb Cell Fact. 2014 Sep 19;13(1):128. 
  
 [38] Müller S, Regensburger G, Steuer R. (2014) [38] Müller S, Regensburger G, Steuer R. (2014)
Line 9: Line 42:
 Biosystems. 117:68-76. doi: 10.1016/j.biosystems.2013.12.006.  Biosystems. 117:68-76. doi: 10.1016/j.biosystems.2013.12.006. 
  
-== Publications 2013 ==+**Publications 2013**
  
 [36] H. Knoop, M. Gruendel, Y. Zilliges, R. Lehmann, S. Hoffmann, W. Lockau, R. Steuer. (2013) **[[http://www.ncbi.nlm.nih.gov/pubmed/23843751|Flux Balance Analysis of Cyanobacterial Metabolism: The metabolic network of Synechocystis sp. PCC 6803.]]** PLoS Comput Biol 9(6): e1003081. doi:10.1371/journal.pcbi.1003081 [36] H. Knoop, M. Gruendel, Y. Zilliges, R. Lehmann, S. Hoffmann, W. Lockau, R. Steuer. (2013) **[[http://www.ncbi.nlm.nih.gov/pubmed/23843751|Flux Balance Analysis of Cyanobacterial Metabolism: The metabolic network of Synechocystis sp. PCC 6803.]]** PLoS Comput Biol 9(6): e1003081. doi:10.1371/journal.pcbi.1003081
Line 17: Line 50:
 BMC Bioinformatics 14:133. doi: 10.1186/1471-2105-14-133.  BMC Bioinformatics 14:133. doi: 10.1186/1471-2105-14-133. 
  
-=== Publications 2012 ===+**Publications 2012**
  
 [34] Kämäräinen J, Knoop H, Stanford NJ, Guerrero F, Akhtar MK, Aro EM, Steuer R, Jones PR. (2012)  [34] Kämäräinen J, Knoop H, Stanford NJ, Guerrero F, Akhtar MK, Aro EM, Steuer R, Jones PR. (2012) 
Line 31: Line 64:
 BMC Genomics. 13(1):56. BMC Genomics. 13(1):56.
  
-== Publications 2011 ==+**Publications 2011**
  
 [31] Steuer R, Waldherr S, Sourjik V, Kollmann M (2011) [31] Steuer R, Waldherr S, Sourjik V, Kollmann M (2011)
-Robust Signal Processing in Living Cells.  PLoS Comput Biol 7(11): e1002218. doi:10.1371/journal.pcbi.1002218 +**[[http://www.ncbi.nlm.nih.gov/pubmed/22215991|Robust Signal Processing in Living Cells.]]**   
 +PLoS Comput Biol 7(11): e1002218. doi:10.1371/journal.pcbi.1002218 
  
 [30] E. Murabito, K. Smallbone, J. Swinton, H. V. Westerhoff, R. Steuer (2011) [30] E. Murabito, K. Smallbone, J. Swinton, H. V. Westerhoff, R. Steuer (2011)
-A probabilistic approach to identify putative drug targets in biochemical networks. J R Soc Interface. 8(59):880-95. +**[[http://www.ncbi.nlm.nih.gov/pubmed/21123256|A probabilistic approach to identify putative drug targets in biochemical networks.]]** 
 +J R Soc Interface. 8(59):880-95. 
  
 [29] R. Steuer (2011) [29] R. Steuer (2011)
-Exploring the Dynamics of Large-Scale Biochemical Networks: A Computational Perspective. The Open Bioinformatics Journal Vol. 5, pp.4-15+**Exploring the Dynamics of Large-Scale Biochemical Networks: A Computational Perspective.** 
 +The Open Bioinformatics Journal Vol. 5, pp.4-15
  
 [28] H. Koeppl, S. Andreozzi, and R. Steuer (2011) [28] H. Koeppl, S. Andreozzi, and R. Steuer (2011)
 Guaranteed and Randomized Methods for Stability Analysis of Uncertain Metabolic Networks. Lecture Notes in Control and Information Sciences, Volume 407, 297-307 Guaranteed and Randomized Methods for Stability Analysis of Uncertain Metabolic Networks. Lecture Notes in Control and Information Sciences, Volume 407, 297-307
  
-== Publications 2010 == +**Publications 2010**
  
  
 [27] H. Knoop, Y. Zilliges, W. Lockau and R. Steuer (2010) [27] H. Knoop, Y. Zilliges, W. Lockau and R. Steuer (2010)
-The metabolic network of Synechocystis sp. PCC 6803: Systemic properties of autotrophic growth.  Plant Physiol. 154(1):410-22. +**[[http://www.ncbi.nlm.nih.gov/pubmed/20616194|The metabolic network of Synechocystis sp. PCC 6803: Systemic properties of autotrophic growth.]]** 
 +Plant Physiol. 154(1):410-22. 
  
 [26] P. D. Kourdis, Ralf Steuer, and D. A. Goussis (2010) [26] P. D. Kourdis, Ralf Steuer, and D. A. Goussis (2010)
-Physical understanding of complex multiscale biochemical models via algorithmic simplification: Glycolysis in Saccharomyces cerevisiae. Physica D Vol. 239, Issue 18, pp. 1798-1817 +**Physical understanding of complex multiscale biochemical models via algorithmic simplification: Glycolysis in Saccharomyces cerevisiae.**  
 +Physica D Vol. 239, Issue 18, pp. 1798-1817 
  
-== Publications 2009 ==+**Publications 2009**
  
 [25] R. Steuer and B. H. Junker (2009) [25] R. Steuer and B. H. Junker (2009)
Line 60: Line 98:
  
 [24] SV Albers, NK Birkeland, AJ Driessen et al. (2009) [24] SV Albers, NK Birkeland, AJ Driessen et al. (2009)
-SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation. Biochem Soc Trans. 37(Pt 1):58-64 +[[http://www.ncbi.nlm.nih.gov/pubmed/19143602|SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation.]] Biochem Soc Trans. 37(Pt 1):58-64 
  
-== Publications 2008 ==+**Publications 2008**
  
 [23] J. Schmiedel and R. Steuer (2008) [23] J. Schmiedel and R. Steuer (2008)
Line 73: Line 111:
 Computation and Visualization of Bifurcation Surfaces  Intern. J. of Bifurcation and Chaos (IJBC), Vol. 18, No. 8, pp. 2191-2206  Computation and Visualization of Bifurcation Surfaces  Intern. J. of Bifurcation and Chaos (IJBC), Vol. 18, No. 8, pp. 2191-2206 
  
-== Publications 2007 ==+**Publications 2007**
  
 [20] Grimbs S, Selbig J, Bulik S, Holzhütter HG, and Steuer R (2007) [20] Grimbs S, Selbig J, Bulik S, Holzhütter HG, and Steuer R (2007)
Line 89: Line 127:
 A gentle guide to the analysis of metabolomic data.  Methods Mol Biol. 358:105-26.   A gentle guide to the analysis of metabolomic data.  Methods Mol Biol. 358:105-26.  
  
-== Publications 2006 ==+**Publications 2006**
  
 [16] Steuer R, Gross T, Selbig J, Blasius B. (2006) [16] Steuer R, Gross T, Selbig J, Blasius B. (2006)
Line 103: Line 141:
 On the analysis and interpretation of correlations in metabolomic data. Brief Bioinform. 7(2):151-8.  On the analysis and interpretation of correlations in metabolomic data. Brief Bioinform. 7(2):151-8. 
  
-== Publications 2005  ==+**Publications 2005**
  
 [12] W. Weckwerth and R. Steuer (2005) [12] W. Weckwerth and R. Steuer (2005)
Line 109: Line 147:
 In: Metabolome Analyses: Strategies for Systems Biology. S. Vaidyanathan (Editor), G. G. Harrigan (Editor), R. Goodacre (Editor). Chapter 15, pp. 265-290. Springer; 1 edition  In: Metabolome Analyses: Strategies for Systems Biology. S. Vaidyanathan (Editor), G. G. Harrigan (Editor), R. Goodacre (Editor). Chapter 15, pp. 265-290. Springer; 1 edition 
  
-== Publications 2004 ==+**Publications 2004**
  
 [11] Ralf Steuer (2004) [11] Ralf Steuer (2004)
Line 123: Line 161:
 Entropy and complexity analysis of intracranially recorded EEG. International Journal of Bifurcation and Chaos, Vol. 14, No. 2, pp. 815-823  Entropy and complexity analysis of intracranially recorded EEG. International Journal of Bifurcation and Chaos, Vol. 14, No. 2, pp. 815-823 
  
-== Publications 2003 ==+**Publications 2003**
  
 [7] R. Steuer, J. Kurths, O. Fiehn and W. Weckwerth (2003) [7] R. Steuer, J. Kurths, O. Fiehn and W. Weckwerth (2003)
Line 134: Line 172:
 Interpreting correlations in metabolomic networks. Biochemical Society Transactions, Vol. 31 (6), 1476-1478   Interpreting correlations in metabolomic networks. Biochemical Society Transactions, Vol. 31 (6), 1476-1478  
  
-== Publications 2002 ==+**Publications 2002**
  
 [4] R. Steuer, J. Kurths, C. O. Daub, J. Weise and J. Selbig (2002) [4] R. Steuer, J. Kurths, C. O. Daub, J. Weise and J. Selbig (2002)
 The Mutual Information: Detecting and evaluating dependencies between variables. Bioinformatics, Vol. 18 (Suppl. 2), S231-S240  The Mutual Information: Detecting and evaluating dependencies between variables. Bioinformatics, Vol. 18 (Suppl. 2), S231-S240 
  
-== Publications 2001 ==+**Publications 2001**
  
 [3] R. Steuer, W. Ebeling, D. F. Russell, S. Bahar, A. Neiman and F. Moss (2001) [3] R. Steuer, W. Ebeling, D. F. Russell, S. Bahar, A. Neiman and F. Moss (2001)
Line 149: Line 187:
 [1] R. Steuer, L. Molgedey, W. Ebeling and M. A. Jimenez-Montano (2001) [1] R. Steuer, L. Molgedey, W. Ebeling and M. A. Jimenez-Montano (2001)
 Entropy and optimal partition for data analysis. Eur. Phys. J. B 19, 265-269   Entropy and optimal partition for data analysis. Eur. Phys. J. B 19, 265-269  
 +
 +-----
 +
  
  
-=== In Revision === 
  
-E. Murabito, M. Verma, M. Bekker, D. Bellomo, H. V. Westerhoff, B. Teusink, R. Steuer. Probabilistic Modeling of the Central Carbon Metabolism of Lactococcus lactis: Insights into Metabolic Regulation. Submission January 2013.