members:steuer:publicationssteuer

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision		 Previous revision
Last revisionBoth sides next revision
members:steuer:publicationssteuer [2014/12/31 14:36] – steuermembers:steuer:publicationssteuer [2016/07/04 09:24] – steuer
Line 1: Line 1:
-==== Ralf Steuer − Publications ====+==== Metabolic Network Analysis − Publications ==== 
 + 
 +**Publications 2016** 
 + 
 +[46] Zavřel T, Knoop H, Steuer R, Jones PR, Červený J, Trtílek M. (2016) **[[http://www.ncbi.nlm.nih.gov/pubmed/ 26708481|A quantitative evaluation of ethylene production in the recombinant cyanobacterium Synechocystis sp. PCC 6803 harboring the ethylene-forming enzyme by membrane inlet mass spectrometry.]]**.  
 +Bioresour Technol. 202:142-51. doi: 10.1016/j.biortech.2015.11.062. 
 + 
 +**Publications 2015** 
 + 
 +[45] Muller S, Regensburger G, Steuer R.  (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/26614660|Resource allocation in metabolic networks: kinetic optimization and approximations by FBA.]]**.  
 +Biochem Soc Trans. 2015 Dec 1;43(6):1195-200. doi: 10.1042/BST20150156. Review. 
 + 
 +[44] Ruegen M, Bockmayr A, Steuer R.  (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/26496972|Elucidating temporal resource allocation and diurnal dynamics in phototrophic metabolism using conditional FBA]]**.  
 +Sci Rep. 2015 Oct 26;5:15247. doi: 10.1038/srep15247. 
 + 
 +[43] Erdrich P, Steuer R, Klamt S. (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/26286864|An algorithm for the reduction of genome-scale metabolic network models to meaningful core models.]]**.  
 +BMC Syst Biol. 2015 Aug 19;9:48. doi: 10.1186/s12918-015-0191-x. 
 + 
 +[42] Knoop H, Steuer R.  (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/25941672|A computational analysis of stoichiometric constraints and trade-offs in cyanobacterial biofuel production.]]**.  
 +Front Bioeng Biotechnol. 2015 Apr 20;3:47. doi: 10.3389/fbioe.2015.00047. eCollection 2015. 
 + 
 +[41] Klemke F, Baier A, Knoop H, Kern R, Jablonsky J, Beyer G, Volkmer T, Steuer R, Lockau W, Hagemann M. (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/25701735|Identification of the light-independent phosphoserine pathway as additional source for serine in the cyanobacterium Synechocystis sp. PCC 6803]]**.  
 +Microbiology. 2015 Feb 20. pii: mic.0.000055. doi: 10.1099/mic.0.000055. 
 + 
 + 
 +**Publications 2014**
  
-== Publications 2014 == 
 [40] Murabito E, Verma M, Bekker M, Bellomo D, Westerhoff HV, Teusink B, Steuer R. (2014)  [40] Murabito E, Verma M, Bekker M, Bellomo D, Westerhoff HV, Teusink B, Steuer R. (2014) 
 **[[http://www.ncbi.nlm.nih.gov/pubmed/25268481|Monte-Carlo modeling of the central carbon metabolism of Lactococcus lactis: insights into metabolic regulation]]**. **[[http://www.ncbi.nlm.nih.gov/pubmed/25268481|Monte-Carlo modeling of the central carbon metabolism of Lactococcus lactis: insights into metabolic regulation]]**.
Line 18: Line 42:
 Biosystems. 117:68-76. doi: 10.1016/j.biosystems.2013.12.006.  Biosystems. 117:68-76. doi: 10.1016/j.biosystems.2013.12.006. 
  
-== Publications 2013 ==+**Publications 2013**
  
 [36] H. Knoop, M. Gruendel, Y. Zilliges, R. Lehmann, S. Hoffmann, W. Lockau, R. Steuer. (2013) **[[http://www.ncbi.nlm.nih.gov/pubmed/23843751|Flux Balance Analysis of Cyanobacterial Metabolism: The metabolic network of Synechocystis sp. PCC 6803.]]** PLoS Comput Biol 9(6): e1003081. doi:10.1371/journal.pcbi.1003081 [36] H. Knoop, M. Gruendel, Y. Zilliges, R. Lehmann, S. Hoffmann, W. Lockau, R. Steuer. (2013) **[[http://www.ncbi.nlm.nih.gov/pubmed/23843751|Flux Balance Analysis of Cyanobacterial Metabolism: The metabolic network of Synechocystis sp. PCC 6803.]]** PLoS Comput Biol 9(6): e1003081. doi:10.1371/journal.pcbi.1003081
Line 26: Line 50:
 BMC Bioinformatics 14:133. doi: 10.1186/1471-2105-14-133.  BMC Bioinformatics 14:133. doi: 10.1186/1471-2105-14-133. 
  
-=== Publications 2012 ===+**Publications 2012**
  
 [34] Kämäräinen J, Knoop H, Stanford NJ, Guerrero F, Akhtar MK, Aro EM, Steuer R, Jones PR. (2012)  [34] Kämäräinen J, Knoop H, Stanford NJ, Guerrero F, Akhtar MK, Aro EM, Steuer R, Jones PR. (2012) 
Line 40: Line 64:
 BMC Genomics. 13(1):56. BMC Genomics. 13(1):56.
  
-== Publications 2011 ==+**Publications 2011**
  
 [31] Steuer R, Waldherr S, Sourjik V, Kollmann M (2011) [31] Steuer R, Waldherr S, Sourjik V, Kollmann M (2011)
Line 57: Line 81:
 Guaranteed and Randomized Methods for Stability Analysis of Uncertain Metabolic Networks. Lecture Notes in Control and Information Sciences, Volume 407, 297-307 Guaranteed and Randomized Methods for Stability Analysis of Uncertain Metabolic Networks. Lecture Notes in Control and Information Sciences, Volume 407, 297-307
  
-== Publications 2010 == +**Publications 2010**
  
  
Line 68: Line 92:
 Physica D Vol. 239, Issue 18, pp. 1798-1817  Physica D Vol. 239, Issue 18, pp. 1798-1817 
  
-== Publications 2009 ==+**Publications 2009**
  
 [25] R. Steuer and B. H. Junker (2009) [25] R. Steuer and B. H. Junker (2009)
Line 76: Line 100:
 [[http://www.ncbi.nlm.nih.gov/pubmed/19143602|SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation.]] Biochem Soc Trans. 37(Pt 1):58-64  [[http://www.ncbi.nlm.nih.gov/pubmed/19143602|SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation.]] Biochem Soc Trans. 37(Pt 1):58-64 
  
-== Publications 2008 ==+**Publications 2008**
  
 [23] J. Schmiedel and R. Steuer (2008) [23] J. Schmiedel and R. Steuer (2008)
Line 87: Line 111:
 Computation and Visualization of Bifurcation Surfaces  Intern. J. of Bifurcation and Chaos (IJBC), Vol. 18, No. 8, pp. 2191-2206  Computation and Visualization of Bifurcation Surfaces  Intern. J. of Bifurcation and Chaos (IJBC), Vol. 18, No. 8, pp. 2191-2206 
  
-== Publications 2007 ==+**Publications 2007**
  
 [20] Grimbs S, Selbig J, Bulik S, Holzhütter HG, and Steuer R (2007) [20] Grimbs S, Selbig J, Bulik S, Holzhütter HG, and Steuer R (2007)
Line 103: Line 127:
 A gentle guide to the analysis of metabolomic data.  Methods Mol Biol. 358:105-26.   A gentle guide to the analysis of metabolomic data.  Methods Mol Biol. 358:105-26.  
  
-== Publications 2006 ==+**Publications 2006**
  
 [16] Steuer R, Gross T, Selbig J, Blasius B. (2006) [16] Steuer R, Gross T, Selbig J, Blasius B. (2006)
Line 117: Line 141:
 On the analysis and interpretation of correlations in metabolomic data. Brief Bioinform. 7(2):151-8.  On the analysis and interpretation of correlations in metabolomic data. Brief Bioinform. 7(2):151-8. 
  
-== Publications 2005  ==+**Publications 2005**
  
 [12] W. Weckwerth and R. Steuer (2005) [12] W. Weckwerth and R. Steuer (2005)
Line 123: Line 147:
 In: Metabolome Analyses: Strategies for Systems Biology. S. Vaidyanathan (Editor), G. G. Harrigan (Editor), R. Goodacre (Editor). Chapter 15, pp. 265-290. Springer; 1 edition  In: Metabolome Analyses: Strategies for Systems Biology. S. Vaidyanathan (Editor), G. G. Harrigan (Editor), R. Goodacre (Editor). Chapter 15, pp. 265-290. Springer; 1 edition 
  
-== Publications 2004 ==+**Publications 2004**
  
 [11] Ralf Steuer (2004) [11] Ralf Steuer (2004)
Line 137: Line 161:
 Entropy and complexity analysis of intracranially recorded EEG. International Journal of Bifurcation and Chaos, Vol. 14, No. 2, pp. 815-823  Entropy and complexity analysis of intracranially recorded EEG. International Journal of Bifurcation and Chaos, Vol. 14, No. 2, pp. 815-823 
  
-== Publications 2003 ==+**Publications 2003**
  
 [7] R. Steuer, J. Kurths, O. Fiehn and W. Weckwerth (2003) [7] R. Steuer, J. Kurths, O. Fiehn and W. Weckwerth (2003)
Line 148: Line 172:
 Interpreting correlations in metabolomic networks. Biochemical Society Transactions, Vol. 31 (6), 1476-1478   Interpreting correlations in metabolomic networks. Biochemical Society Transactions, Vol. 31 (6), 1476-1478  
  
-== Publications 2002 ==+**Publications 2002**
  
 [4] R. Steuer, J. Kurths, C. O. Daub, J. Weise and J. Selbig (2002) [4] R. Steuer, J. Kurths, C. O. Daub, J. Weise and J. Selbig (2002)
 The Mutual Information: Detecting and evaluating dependencies between variables. Bioinformatics, Vol. 18 (Suppl. 2), S231-S240  The Mutual Information: Detecting and evaluating dependencies between variables. Bioinformatics, Vol. 18 (Suppl. 2), S231-S240 
  
-== Publications 2001 ==+**Publications 2001**
  
 [3] R. Steuer, W. Ebeling, D. F. Russell, S. Bahar, A. Neiman and F. Moss (2001) [3] R. Steuer, W. Ebeling, D. F. Russell, S. Bahar, A. Neiman and F. Moss (2001)
Line 166: Line 190:
 ----- -----
  
-=== In Revision ===+