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groups:nils:publications [2014/08/22 18:03] nilsgroups:nils:publications [2016/03/03 12:20] (current) – external edit 127.0.0.1
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-  ===== Publications ===== + ==== Publications ==== 
-  === 2014 ===       +=== 2014 === 
 +Astrid G Petzoldt, Yü-Hien Lee, Omid Khorramshahi, Eric Reynolds, Andrew J R Plested, Hanspeter Herzel, Stephan J Sigrist, 2014, Gating Characteristics Control Glutamate Receptor Distribution and Trafficking In Vivo. Curr. Biol., ,    [[http://dx.doi.org/10.1016/j.cub.2014.07.051|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=25131677%5Buid%5D|(abstract)]] 
  
-BharathAnanthasubramaniam Hanspeter, Herzel 2014, Positive feedback promotes oscillations in negative feedback loops. PLoS ONE, 9,  e104761 [[http://dx.doi.org/10.1371/journal.pone.0104761|(full text)]] +Bharath Ananthasubramaniam, Hanspeter Herzel2014, Positive feedback promotes oscillations in negative feedback loops. PLoS ONE, 9,  e104761  [[http://dx.doi.org/10.1371/journal.pone.0104761|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=25126951%5Buid%5D|(abstract)]] 
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-BertramKlinger Nils, Blüthgen 2014, Consequences of feedback in signal transduction for targeted therapies. Biochem. Soc. Trans., 42,  770-5 [[http://dx.doi.org/10.1042/BST20140130|(full text)]] +Bertram Klinger, Nils Blüthgen2014, Consequences of feedback in signal transduction for targeted therapies. Biochem. Soc. Trans., 42,  770-5  [[http://dx.doi.org/10.1042/BST20140130|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=25109956%5Buid%5D|(abstract)]] 
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-Robert, Lehmann RainerMachné Hanspeter, Herzel 2014, The structural code of cyanobacterial genomes. Nucleic Acids Res., 42,  8873-83 [[http://dx.doi.org/10.1093/nar/gku641|(full text)]] +Robert Lehmann, Rainer Machné, Hanspeter Herzel2014, The structural code of cyanobacterial genomes. Nucleic Acids Res., 42,  8873-83  [[http://dx.doi.org/10.1093/nar/gku641|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=25056315%5Buid%5D|(abstract)]] 
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-AnjaKorenčič RokKošir GrigoryBordyugov Robert, Lehmann Damjana, Rozman Hanspeter, Herzel 2014, Timing of circadian genes in mammalian tissues. Sci Rep, 4,  5782 [[http://dx.doi.org/10.1038/srep05782|(full text)]] +Anja KorenčičRok KoširGrigory Bordyugov, Robert Lehmann, Damjana Rozman, Hanspeter Herzel2014, Timing of circadian genes in mammalian tissues. Sci Rep, 4,  5782  [[http://dx.doi.org/10.1038/srep05782|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=25048020%5Buid%5D|(abstract)]] 
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-Eric, Reifenstein Martin, Stemmler Andreas V MHerz Richard, Kempter Susanne, Schreiber 2014, Movement dependence and layer specificity of entorhinal phase precession in two-dimensional environments. PLoS ONE, 9,  e100638 [[http://dx.doi.org/10.1371/journal.pone.0100638|(full text)]] +Eric Reifenstein, Martin Stemmler, Andreas V M Herz, Richard Kempter, Susanne Schreiber2014, Movement dependence and layer specificity of entorhinal phase precession in two-dimensional environments. PLoS ONE, 9,  e100638  [[http://dx.doi.org/10.1371/journal.pone.0100638|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24959748%5Buid%5D|(abstract)]] 
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-Christian, Beck Stefanie, Hertel Anne, Rediger RobertLehmann Anika, Wiegard Adrian, Kölsch Beate, Heilmann Jens, Georg Wolfgang RHess Ilka MAxmann 2014, Daily Expression Pattern of Protein-Encoding Genes and Small Noncoding RNAs in Synechocystis sp. Strain PCC 6803. Appl. Environ. Microbiol., 80,  5195-206 [[http://dx.doi.org/10.1128/AEM.01086-14|(full text)]] +Christian Beck, Stefanie Hertel, Anne Rediger, Robert Lehmann, Anika Wiegard, Adrian Kölsch, Beate Heilmann, Jens GeorgWolfgang R HessIlka M Axmann2014, Daily Expression Pattern of Protein-Encoding Genes and Small Noncoding RNAs in Synechocystis sp. Strain PCC 6803. Appl. Environ. Microbiol., 80,  5195-206  [[http://dx.doi.org/10.1128/AEM.01086-14|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24928881%5Buid%5D|(abstract)]] 
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-Monica, Killig Birte, Friedrichs JohannesMeisig Chiara, Gentilini NilsBlüthgen Christoph, Loddenkemper Myriam, Labopin Nadezda, Basara Christian, Pfrepper Dietger WNiederwieser Lutz, Uharek Chiara, Romagnani 2014, Tracking in vivo dynamics of NK cells transferred in patients undergoing stem cell transplantation. Eur. J. Immunol., ,   [[http://dx.doi.org/10.1002/eji.201444586|(full text)]] +Monica Killig, Birte Friedrichs, Johannes MeisigChiara Gentilini, Nils Blüthgen, Christoph Loddenkemper, Myriam Labopin, Nadezda BasaraChristian Pfrepper, Dietger W Niederwieser, Lutz Uharek, Chiara Romagnani2014, Tracking in vivo dynamics of NK cells transferred in patients undergoing stem cell transplantation. Eur. J. Immunol., ,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24895051%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1002/eji.201444586|(full text)]] 
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-Angela, Relógio Philippe, Thomas PaulaMedina-Pérez Silke, Reischl Sander, Bervoets Ewa, Gloc Pamela, Riemer Shila, Mang-Fatehi Bert, Maier Reinhold, Schäfer Ulf, Leser Hanspeter, Herzel Achim, Kramer Christine, Sers 2014, Ras-mediated deregulation of the circadian clock in cancer. PLoS Genet., 10,  e1004338 [[http://dx.doi.org/10.1371/journal.pgen.1004338|(full text)]] +Angela Relógio, Philippe Thomas, Paula Medina-Pérez, Silke Reischl, Sander Bervoets, Ewa Gloc, Pamela Riemer, Shila Mang-Fatehi, Bert Maier, Reinhold Schäfer, Ulf Leser, Hanspeter Herzel, Achim Kramer, Christine Sers2014, Ras-mediated deregulation of the circadian clock in cancer. PLoS Genet., 10,  e1004338  [[http://dx.doi.org/10.1371/journal.pgen.1004338|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24875049%5Buid%5D|(abstract)]] 
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-Jorge, Jaramillo Robert, Schmidt RichardKempter 2014, Modeling inheritance of phase precession in the hippocampal formation. J. Neurosci., 34,  7715-31 [[http://dx.doi.org/10.1523/JNEUROSCI.5136-13.2014|(full text)]] +Jorge Jaramillo, Robert Schmidt, Richard Kempter2014, Modeling inheritance of phase precession in the hippocampal formation. J. Neurosci., 34,  7715-31  [[http://dx.doi.org/10.1523/JNEUROSCI.5136-13.2014|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24872575%5Buid%5D|(abstract)]] 
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-Frederic ARoemschied Monika JbEberhard Jan-HendrikSchleimer Bernhard, Ronacher Susanne, Schreiber 2014, Cell-intrinsic mechanisms of temperature compensation in a grasshopper sensory receptor neuron. Elife, 3,  e02078 [[http://dx.doi.org/10.7554/eLife.02078|(full text)]] +Frederic A RoemschiedMonika Jb EberhardJan-Hendrik Schleimer, Bernhard Ronacher, Susanne Schreiber2014, Cell-intrinsic mechanisms of temperature compensation in a grasshopper sensory receptor neuron. Elife, 3,  e02078  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24843016%5Buid%5D|(abstract)]] 
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-ArndtTelschow KirstenHilgenboecker PeterHammerstein John HWerren 2014, Dobzhansky-muller and wolbachia-induced incompatibilities in a diploid genetic system. PLoS ONE9 e95488 [[http://dx.doi.org/10.1371/journal.pone.0095488|(full text)]] +Juliane ManitzThomas KneibMartin SchlatherDirk Helbing, Dirk Brockmann, 2014, Origin Detection During Food-borne Disease Outbreaks A Case Study of the 2011 EHEC/HUS Outbreak in Germany. PLoS Curr6   [[http://dx.doi.org/10.1371/currents.outbreaks.f3fdeb08c5b9de7c09ed9cbcef5f01f2|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24818065%5Buid%5D|(abstract)]] 
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-BharathAnanthasubramaniam Erik DHerzog HanspeterHerzel 2014, Timing of neuropeptide coupling determines synchrony and entrainment in the mammalian circadian clock. PLoS Comput. Biol.10,  e1003565 [[http://dx.doi.org/10.1371/journal.pcbi.1003565|(full text)]] +Arndt TelschowKirsten HilgenboeckerPeter Hammerstein, John H Werren, 2014, Dobzhansky-muller and wolbachia-induced incompatibilities in a diploid genetic system. PLoS ONE9,  e95488  [[http://dx.doi.org/10.1371/journal.pone.0095488|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24759973%5Buid%5D|(abstract)]] 
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-Ana C LGuerreiro MarcoBenevento RobertLehmann Bas, van Breukelen Harm, Post Piero, Giansanti A F, Maarten Altelaar Ilka M, Axmann Albert J R, Heck 2014, Daily Rhythms in the Cyanobacterium Synechococcus elongatus Probed by High-resolution Mass Spectrometry-based Proteomics Reveals a Small Defined Set of Cyclic ProteinsMolCell Proteomics13,  2042-55 [[http://dx.doi.org/10.1074/mcp.M113.035840|(full text)]] +Bharath AnanthasubramaniamErik D HerzogHanspeter Herzel, 2014, Timing of neuropeptide coupling determines synchrony and entrainment in the mammalian circadian clock. PLoS ComputBiol., 10,  e1003565  [[http://dx.doi.org/10.1371/journal.pcbi.1003565|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24743470%5Buid%5D|(abstract)]] 
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-RomanZug PeterHammerstein 2014Bad guys turned nice? critical assessment of Wolbachia mutualisms in arthropod hostsBiol Rev Camb Philos Soc, ,   [[http://dx.doi.org/10.1111/brv.12098|(full text)]] +Ana C L GuerreiroMarco BeneventoRobert Lehmann, Bas van Breukelen, Harm Post, Piero Giansanti, A F Maarten Altelaar, Ilka M Axmann, Albert J R Heck, 2014, Daily Rhythms in the Cyanobacterium Synechococcus elongatus Probed by High-resolution Mass Spectrometry-based Proteomics Reveals a Small Defined Set of Cyclic Proteins. MolCell Proteomics13 2042-55  [[http://dx.doi.org/10.1074/mcp.M113.035840|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24677030%5Buid%5D|(abstract)]] 
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-Edda GSchulz JohannesMeisig Tomonori, Nakamura Ikuhiro, Okamoto Anja, Sieber Christel, Picard Maud, Borensztein Mitinori, Saitou Nils, Blüthgen Edith, Heard 2014, The two active X chromosomes in female ESCs block exit from the pluripotent state by modulating the ESC signaling networkCell Stem Cell14 203-16 [[http://dx.doi.org/10.1016/j.stem.2013.11.022|(full text)]] +Roman ZugPeter Hammerstein, 2014, Bad guys turned nice? A critical assessment of Wolbachia mutualisms in arthropod hostsBiol Rev Camb Philos Soc, ,    [[http://dx.doi.org/10.1111/brv.12098|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24618033%5Buid%5D|(abstract)]] 
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-JoostSnijder Rebecca JBurnley AnikaWiegard Adrien S JMelquiond Alexandre M J JBonvin Ilka MAxmann Albert RHeck 2014, Insight into cyanobacterial circadian timing from structural details of the KaiB-KaiC interaction. ProcNatl. Acad. Sci. U.S.A., 111,  1379-84 [[http://dx.doi.org/10.1073/pnas.1314326111|(full text)]] +Philippe LemeyAndrew RambautTrevor BedfordNuno FariaFilip BielejecGuy BaeleColin A Russell, Derek Smith, Oliver G Pybus, Dirk Brockmann, Marc A Suchard, 2014, Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2PLoS Pathog., 10,  e1003932  [[http://dx.doi.org/10.1371/journal.ppat.1003932|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24586153%5Buid%5D|(abstract)]] 
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-Gijsbert D AWerner Joan EStrassmann Aniek B FIvens Daniel J PEngelmoer ErikVerbruggen David CQueller RonaldNoë Nancy CollinsJohnson PeterHammerstein E TobyKiers 2014, Evolution of microbial markets. Proc. Natl. Acad. Sci. U.S.A., 111,  1237-44 [[http://dx.doi.org/10.1073/pnas.1315980111|(full text)]] +Edda G SchulzJohannes MeisigTomonori NakamuraIkuhiro OkamotoAnja SieberChristel PicardMaud BorenszteinMitinori SaitouNils BlüthgenEdith Heard, 2014, The two active X chromosomes in female ESCs block exit from the pluripotent state by modulating the ESC signaling networkCell Stem Cell14,  203-16  [[http://dx.doi.org/10.1016/j.stem.2013.11.022|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24506884%5Buid%5D|(abstract)]] 
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-WilliGottstein StefanMüller HanspeterHerzel RalfSteuer 2014, Elucidating the adaptation and temporal coordination of metabolic pathways using in-silico evolutionBioSystems117,  68-76 [[http://dx.doi.org/10.1016/j.biosystems.2013.12.006|(full text)]] +Joost SnijderRebecca J BurnleyAnika WiegardAdrien S J Melquiond, Alexandre M J J Bonvin, Ilka M Axmann, Albert J R Heck, 2014, Insight into cyanobacterial circadian timing from structural details of the KaiB-KaiC interaction. Proc. Natl. Acad. Sci. U.S.A., 111,  1379-84  [[http://dx.doi.org/10.1073/pnas.1314326111|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24474762%5Buid%5D|(abstract)]] 
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-Ilka MAxmann StefanieHertel AnikaWiegard Anja KDörrich AnnegretWilde 2014, Diversity of KaiC-based timing systems in marine CyanobacteriaMar Genomics14,  3-16 [[http://dx.doi.org/10.1016/j.margen.2013.12.006|(full text)]] +Gijsbert D A WernerJoan E StrassmannAniek B F IvensDaniel J P EngelmoerErik Verbruggen, David C Queller, Ronald Noë, Nancy Collins Johnson, Peter Hammerstein, E Toby Kiers, 2014, Evolution of microbial markets. Proc. Natl. Acad. Sci. U.S.A., 111,  1237-44  [[http://dx.doi.org/10.1073/pnas.1315980111|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24474743%5Buid%5D|(abstract)]] 
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-Stefan, Müller Georg, Regensburger Ralf, Steuer 2014, Enzyme allocation problems in kinetic metabolic networks: optimal solutions are elementary flux modes. J. Theor. Biol., 347,  182-90 [[http://dx.doi.org/10.1016/j.jtbi.2013.11.015|(full text)]] +Willi Gottstein, Stefan MüllerHanspeter Herzel, Ralf Steuer, 2014, Elucidating the adaptation and temporal coordination of metabolic pathways using in-silico evolution. BioSystems, 117,  68-76  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24440082%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.biosystems.2013.12.006|(full text)]]  
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 +Ilka M Axmann, Stefanie Hertel, Anika Wiegard, Anja K Dörrich, Annegret Wilde, 2014, Diversity of KaiC-based timing systems in marine Cyanobacteria. Mar Genomics, 14,  3-16  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24388874%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.margen.2013.12.006|(full text)]]  
 + 
 +Stefan Müller, Georg Regensburger, Ralf Steuer2014, Enzyme allocation problems in kinetic metabolic networks: optimal solutions are elementary flux modes. J. Theor. Biol., 347,  182-90  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24295962%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.jtbi.2013.11.015|(full text)]] 
  
  
 === 2013 === === 2013 ===
-StefanMüller GeorgRegensburger RalfSteuer 2014Enzyme allocation problems in kinetic metabolic networks: optimal solutions are elementary flux modes. J. Theor. Biol., 347,  182-90 [[http://dx.doi.org/10.1016/j.jtbi.2013.11.015|(full text)]] +Dirk BrockmannDirk Helbing2013The hidden geometry of complexnetwork-driven contagion phenomenaScience342,  1337-42  [[http://dx.doi.org/10.1126/science.1245200|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24337289%5Buid%5D|(abstract)]] 
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-EkaterinaZhuchkova Michiel W HRemme SusanneSchreiber 2013Somatic versus dendritic resonancedifferential filtering of inputs through non-uniform distributions of active conductancesPLoS ONE8,  e78908 [[http://dx.doi.org/10.1371/journal.pone.0078908|(full text)]] +Stefan MüllerGeorg RegensburgerRalf Steuer2014Enzyme allocation problems in kinetic metabolic networksoptimal solutions are elementary flux modes. J. Theor. Biol., 347,  182-90  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24295962%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.jtbi.2013.11.015|(full text)]] 
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-StefanieHertel ReimoZoschke LauraNeumann Yujiao, Qu Ilka M, Axmann Christian, Schmitz-Linneweber 2013, Multiple checkpoints for the expression of the chloroplast-encoded splicing factor MatK. Plant Physiol., 163,  1686-98 [[http://dx.doi.org/10.1104/pp.113.227579|(full text)]] +Ekaterina ZhuchkovaMichiel W H RemmeSusanne Schreiber, 2013, Somatic versus dendritic resonance: differential filtering of inputs through non-uniform distributions of active conductancesPLoS ONE8,  e78908  [[http://dx.doi.org/10.1371/journal.pone.0078908|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24223864%5Buid%5D|(abstract)]] 
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-GuidoHermey ClaudiaMahlke Jakob JGutzmann JörgSchreiber NilsBlüthgen DietmarKuhl 2013, Genome-wide profiling of the activity-dependent hippocampal transcriptomePLoS ONE8,  e76903 [[http://dx.doi.org/10.1371/journal.pone.0076903|(full text)]] +Stefanie HertelReimo ZoschkeLaura NeumannYujiao QuIlka M AxmannChristian Schmitz-Linneweber, 2013, Multiple checkpoints for the expression of the chloroplast-encoded splicing factor MatK. Plant Physiol., 163,  1686-98  [[http://dx.doi.org/10.1104/pp.113.227579|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24174638%5Buid%5D|(abstract)]] 
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-HenningKnoop MarianneGründel YvonneZilliges RobertLehmann SabrinaHoffmann WolfgangLockau Ralf, Steuer 2013, Flux balance analysis of cyanobacterial metabolism: the metabolic network of Synechocystis sp. PCC 6803. PLoS Comput. Biol.9,  e1003081 [[http://dx.doi.org/10.1371/journal.pcbi.1003081|(full text)]] +Guido HermeyClaudia MahlkeJakob J GutzmannJörg SchreiberNils BlüthgenDietmar Kuhl, 2013, Genome-wide profiling of the activity-dependent hippocampal transcriptome. PLoS ONE8,  e76903  [[http://dx.doi.org/10.1371/journal.pone.0076903|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24146943%5Buid%5D|(abstract)]] 
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-TimorGlatzer MonicaKillig JohannesMeisig IsabelleOmmert MerlinLuetke-Eversloh Marina, Babic Daniela, Paclik Nils, Blüthgen Rainer, Seidl Claudia, Seifarth Jörn, Gröne Minoo, Lenarz Katharina, Stölzel Dominik, Fugmann Angel, Porgador Anja, Hauser Alexander, Karlas Chiara, Romagnani 2013, RORγt⁺ innate lymphoid cells acquire a proinflammatory program upon engagement of the activating receptor NKp44Immunity38,  1223-35 [[http://dx.doi.org/10.1016/j.immuni.2013.05.013|(full text)]] +Lloyd P SandersBo SöderbergDirk BrockmannTobias Ambjörnsson2013Perturbative solution to susceptible-infected-susceptible epidemics on networksPhys Rev E Stat Nonlin Soft Matter Phys88,  032713  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24125300%5Buid%5D|(abstract)]] 
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-KajetanBentele PaulSaffert RobertRauscher ZoyaIgnatova NilsBlüthgen 2013, Efficient translation initiation dictates codon usage at gene start. Mol. Syst. Biol., 9,  675 [[http://dx.doi.org/10.1038/msb.2013.32|(full text)]] +Olivia Woolley-MezaDaniel GradyChristian ThiemannJames P BagrowDirk Brockmann, 2013, Eyjafjallajökull and 9/11: the impact of large-scale disasters on worldwide mobilityPLoS ONE8,  e69829  [[http://dx.doi.org/10.1371/journal.pone.0069829|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23950904%5Buid%5D|(abstract)]] 
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-BertramKlinger AnjaSieber RaphaelaFritsche-Guenther FranziskaWitzel LeanneBerry DirkSchumacher YibingYan Pawel, Durek Mark, Merchant Reinhold, Schäfer Christine, Sers Nils, Blüthgen 2013, Network quantification of EGFR signaling unveils potential for targeted combination therapyMolSyst. Biol., 9,  673 [[http://dx.doi.org/10.1038/msb.2013.29|(full text)]] +Henning KnoopMarianne GründelYvonne ZilligesRobert LehmannSabrina HoffmannWolfgang LockauRalf Steuer, 2013, Flux balance analysis of cyanobacterial metabolism: the metabolic network of Synechocystis spPCC 6803PLoS Comput. Biol., 9,  e1003081  [[http://dx.doi.org/10.1371/journal.pcbi.1003081|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23843751%5Buid%5D|(abstract)]] 
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-CatherineCarr SahilShah GoAshida ThomasMcColgan HermannWagner Paula TKuokkanen RichardKempter ChristineKöppl 2013, Maps of ITD in the nucleus laminaris of the barn owl. Adv. Exp. Med. Biol., 787,  215-22 [[http://dx.doi.org/10.1007/978-1-4614-1590-9_24|(full text)]] +Timor GlatzerMonica KilligJohannes MeisigIsabelle OmmertMerlin Luetke-Eversloh, Marina Babic, Daniela Paclik, Nils Blüthgen, Rainer Seidl, Claudia Seifarth, Jörn Gröne, Minoo Lenarz, Katharina Stölzel, Dominik Fugmann, Angel PorgadorAnja HauserAlexander KarlasChiara Romagnani, 2013, RORγt⁺ innate lymphoid cells acquire a proinflammatory program upon engagement of the activating receptor NKp44Immunity38,  1223-35  [[http://dx.doi.org/10.1016/j.immuni.2013.05.013|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23791642%5Buid%5D|(abstract)]] 
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-Christian THerbst HanspeterHerzel Jan GSvec Megan TWyman W TecumsehFitch 2013, Visualization of system dynamics using phasegramsJ R Soc Interface10,  20130288 [[http://dx.doi.org/10.1098/rsif.2013.0288|(full text)]] +Kajetan BentelePaul SaffertRobert RauscherZoya IgnatovaNils Blüthgen, 2013, Efficient translation initiation dictates codon usage at gene start. Mol. Syst. Biol., 9,  675  [[http://dx.doi.org/10.1038/msb.2013.32|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23774758%5Buid%5D|(abstract)]] 
-       +
  
-RobertLehmann RainerMachné JensGeorg ManuelaBenary IlkaAxmann RalfSteuer 2013, How cyanobacteria pose new problems to old methods: challenges in microarray time series analysisBMC Bioinformatics14,  133 [[http://dx.doi.org/10.1186/1471-2105-14-133|(full text)]] +Bertram KlingerAnja SieberRaphaela Fritsche-Guenther, Franziska Witzel, Leanne Berry, Dirk Schumacher, Yibing Yan, Pawel Durek, Mark MerchantReinhold SchäferChristine SersNils Blüthgen, 2013, Network quantification of EGFR signaling unveils potential for targeted combination therapy. Mol. Syst. Biol., 9,  673  [[http://dx.doi.org/10.1038/msb.2013.29|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23752269%5Buid%5D|(abstract)]] 
-       +
  
-Pål OWestermark HanspeterHerzel 2013, Mechanism for 12 hr rhythm generation by the circadian clockCell Rep3,  1228-38 [[http://dx.doi.org/10.1016/j.celrep.2013.03.013|(full text)]] +Catherine CarrSahil Shah, Go Ashida, Thomas McColgan, Hermann Wagner, Paula T Kuokkanen, Richard Kempter, Christine Köppl, 2013, Maps of ITD in the nucleus laminaris of the barn owl. Adv. Exp. Med. Biol., 787,  215-22  [[http://dx.doi.org/10.1007/978-1-4614-1590-9_24|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23716226%5Buid%5D|(abstract)]] 
-       +
  
-Paula T, Kuokkanen GoAshida Catherine ECarr HermannWagner RichardKempter 2013, Linear summation in the barn owl's brainstem underlies responses to interaural time differences. J. Neurophysiol.110,  117-30 [[http://dx.doi.org/10.1152/jn.00410.2012|(full text)]] +Christian HerbstHanspeter HerzelJan G SvecMegan T WymanW Tecumseh Fitch, 2013, Visualization of system dynamics using phasegrams. J R Soc Interface10,  20130288  [[http://dx.doi.org/10.1098/rsif.2013.0288|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23697715%5Buid%5D|(abstract)]] 
-       +
  
-Adrián EGranada GrigoryBordyugov AchimKramer HanspeterHerzel 2013, Human chronotypes from a theoretical perspectivePLoS ONE8,  e59464 [[http://dx.doi.org/10.1371/journal.pone.0059464|(full text)]] +Robert LehmannRainer MachnéJens GeorgManuela Benary, Ilka Axmann, Ralf Steuer, 2013, How cyanobacteria pose new problems to old methods: challenges in microarray time series analysisBMC Bioinformatics14,  133  [[http://dx.doi.org/10.1186/1471-2105-14-133|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23601192%5Buid%5D|(abstract)]] 
-       +
  
-StefanieHertel ChristianBrettschneider Ilka M, Axmann 2013, Revealing a two-loop transcriptional feedback mechanism in the cyanobacterial circadian clock. PLoS Comput. Biol.9,  e1002966 [[http://dx.doi.org/10.1371/journal.pcbi.1002966|(full text)]] +Pål O WestermarkHanspeter Herzel, 2013, Mechanism for 12 hr rhythm generation by the circadian clock. Cell Rep3,  1228-38  [[http://dx.doi.org/10.1016/j.celrep.2013.03.013|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23583178%5Buid%5D|(abstract)]] 
-       +
  
-AnikaWiegard Anja KDörrich Hans-Tobias, Deinzer ChristianBeck AnnegretWilde JuliaHoltzendorff Ilka M, Axmann 2013, Biochemical analysis of three putative KaiC clock proteins from Synechocystis spPCC 6803 suggests their functional divergenceMicrobiology (Reading, Engl.)159,  948-58 [[http://dx.doi.org/10.1099/mic.0.065425-0|(full text)]] +Paula T KuokkanenGo AshidaCatherine E CarrHermann WagnerRichard Kempter, 2013, Linear summation in the barn owl's brainstem underlies responses to interaural time differencesJNeurophysiol., 110,  117-30  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23554438%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1152/jn.00410.2012|(full text)]] 
-       +
  
-MariaPangalos José RDonoso JochenWinterer Aleksandar RZivkovic Richard, Kempter Nikolaus, Maier Dietmar, Schmitz 2013, Recruitment of oriens-lacunosum-moleculare interneurons during hippocampal ripples. Proc. Natl. Acad. Sci. U.S.A., 110,  4398-403 [[http://dx.doi.org/10.1073/pnas.1215496110|(full text)]] +Adrián E GranadaGrigory BordyugovAchim KramerHanspeter Herzel, 2013, Human chronotypes from a theoretical perspectivePLoS ONE8,  e59464  [[http://dx.doi.org/10.1371/journal.pone.0059464|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23544070%5Buid%5D|(abstract)]] 
-       +
  
-BenjaminBossan PeterHammerstein ArnulfKoehncke 2013, We were all young once: an intragenomic perspective on parent-offspring conflictProc. Biol. Sci., 280,  20122637 [[http://dx.doi.org/10.1098/rspb.2012.2637|(full text)]] +Stefanie HertelChristian BrettschneiderIlka M Axmann, 2013, Revealing a two-loop transcriptional feedback mechanism in the cyanobacterial circadian clockPLoS Comput. Biol., 9,  e1002966  [[http://dx.doi.org/10.1371/journal.pcbi.1002966|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23516349%5Buid%5D|(abstract)]] 
-       +
  
-Nils, Blüthgen Stefan, Legewie 2013, Robustness of signal transduction pathways. Cell. Mol. Life Sci., 70,  2259-69 [[http://dx.doi.org/10.1007/s00018-012-1162-7|(full text)]] +Anika WiegardAnja K Dörrich, Hans-Tobias Deinzer, Christian Beck, Annegret Wilde, Julia Holtzendorff, Ilka M Axmann, 2013, Biochemical analysis of three putative KaiC clock proteins from Synechocystis sp. PCC 6803 suggests their functional divergence. Microbiology (Reading, Engl.), 159,  948-58  [[http://dx.doi.org/10.1099/mic.0.065425-0|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23449916%5Buid%5D|(abstract)]]  
-       + 
 +Maria Pangalos, José R Donoso, Jochen Winterer, Aleksandar R Zivkovic, Richard Kempter, Nikolaus Maier, Dietmar Schmitz, 2013, Recruitment of oriens-lacunosum-moleculare interneurons during hippocampal ripples. Proc. Natl. Acad. Sci. U.S.A., 110,  4398-403  [[http://dx.doi.org/10.1073/pnas.1215496110|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23440221%5Buid%5D|(abstract)]]  
 + 
 +Benjamin Bossan, Peter Hammerstein, Arnulf Koehncke, 2013, We were all young once: an intragenomic perspective on parent-offspring conflict. Proc. Biol. Sci., 280,  20122637  [[http://dx.doi.org/10.1098/rspb.2012.2637|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23303542%5Buid%5D|(abstract)]]  
 + 
 +Nils Blüthgen, Stefan Legewie2013, Robustness of signal transduction pathways. Cell. Mol. Life Sci., 70,  2259-69  [[http://dx.doi.org/10.1007/s00018-012-1162-7|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23007845%5Buid%5D|(abstract)]] 
  
  
 === 2012 === === 2012 ===
-Franziska, Witzel Louise, Maddison NilsBlüthgen 2012, How scaffolds shape MAPK signaling: what we know and opportunities for systems approaches. Front Physiol, 3,  475 [[http://dx.doi.org/10.3389/fphys.2012.00475|(full text)]] +Franziska Witzel, Louise Maddison, Nils Blüthgen2012, How scaffolds shape MAPK signaling: what we know and opportunities for systems approaches. Front Physiol, 3,  475  [[http://dx.doi.org/10.3389/fphys.2012.00475|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23267331%5Buid%5D|(abstract)]] 
-       +
  
-AnjaKorenčič GrigoryBordyugov Rok, Košir Damjana, Rozman Marko, Goličnik Hanspeter, Herzel 2012, The interplay of cis-regulatory elements rules circadian rhythms in mouse liver. PLoS ONE, 7,  e46835 [[http://dx.doi.org/10.1371/journal.pone.0046835|(full text)]] +Anja KorenčičGrigory Bordyugov, Rok Košir, Damjana Rozman, Marko Goličnik, Hanspeter Herzel2012, The interplay of cis-regulatory elements rules circadian rhythms in mouse liver. PLoS ONE, 7,  e46835  [[http://dx.doi.org/10.1371/journal.pone.0046835|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23144788%5Buid%5D|(abstract)]] 
-       +
  
-NilsBlüthgen Stefan, Legewie 2013, Robustness of signal transduction pathways. Cell. Mol. Life Sci., 70,  2259-69 [[http://dx.doi.org/10.1007/s00018-012-1162-7|(full text)]] +Nils Blüthgen, Stefan Legewie2013, Robustness of signal transduction pathways. Cell. Mol. Life Sci., 70,  2259-69  [[http://dx.doi.org/10.1007/s00018-012-1162-7|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23007845%5Buid%5D|(abstract)]] 
-       +
  
-Dmitry, Zarubin EkaterinaZhuchkova Susanne, Schreiber 2012, Effects of cooperative ion-channel interactions on the dynamics of excitable membranes. Phys Rev E Stat Nonlin Soft Matter Phys, 85,  061904 [[http://dx.doi.org/|(full text)]] +Dmitry Zarubin, Ekaterina Zhuchkova, Susanne Schreiber2012, Effects of cooperative ion-channel interactions on the dynamics of excitable membranes. Phys Rev E Stat Nonlin Soft Matter Phys, 85,  061904  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23005124%5Buid%5D|(abstract)]] 
-       +
  
-Hanna, Bendfeldt Manuela, Benary Tobias, Scheel KerstinSteinbrink Andreas, Radbruch Hanspeter, Herzel Ria, Baumgrass 2012, IL-2 Expression in Activated Human Memory FOXP3(+) Cells Critically Depends on the Cellular Levels of FOXP3 as Well as of Four Transcription Factors of  T Cell Activation. Front Immunol, 3,  264 [[http://dx.doi.org/10.3389/fimmu.2012.00264|(full text)]] +Hanna Bendfeldt, Manuela Benary, Tobias Scheel, Kerstin Steinbrink, Andreas Radbruch, Hanspeter Herzel, Ria Baumgrass2012, IL-2 Expression in Activated Human Memory FOXP3(+) Cells Critically Depends on the Cellular Levels of FOXP3 as Well as of Four Transcription Factors of  T Cell Activation. Front Immunol, 3,  264  [[http://dx.doi.org/10.3389/fimmu.2012.00264|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22969764%5Buid%5D|(abstract)]] 
-       +
  
-Jari, Kämäräinen Henning, Knoop Natalie JStanford Fernando, Guerrero M KalimAkhtar Eva-MariAro Ralf, Steuer Patrik RJones 2012, Physiological tolerance and stoichiometric potential of cyanobacteria for hydrocarbon fuel production. J. Biotechnol., 162,  67-74 [[http://dx.doi.org/10.1016/j.jbiotec.2012.07.193|(full text)]] +Jari Kämäräinen, Henning Knoop, Natalie J Stanford, Fernando GuerreroM Kalim AkhtarEva-Mari Aro, Ralf SteuerPatrik R Jones2012, Physiological tolerance and stoichiometric potential of cyanobacteria for hydrocarbon fuel production. J. Biotechnol., 162,  67-74  [[http://dx.doi.org/10.1016/j.jbiotec.2012.07.193|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22954891%5Buid%5D|(abstract)]] 
-       +
  
-Go, Ashida Kazuo, Funabiki Paula TKuokkanen Richard, Kempter Catherine ECarr 2012, Signal-to-noise ratio in the membrane potential of the owl's auditory coincidence detectors. J. Neurophysiol., 108,  2837-45 [[http://dx.doi.org/10.1152/jn.00366.2012|(full text)]] +Go Ashida, Kazuo Funabiki, Paula T Kuokkanen, Richard KempterCatherine E Carr2012, Signal-to-noise ratio in the membrane potential of the owl's auditory coincidence detectors. J. Neurophysiol., 108,  2837-45  [[http://dx.doi.org/10.1152/jn.00366.2012|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22933726%5Buid%5D|(abstract)]] 
-       +
  
-Jörn Matthias, Schmiedel Ilka MariaAxmann Stefan, Legewie 2012, Multi-target regulation by small RNAs synchronizes gene expression thresholds and may enhance ultrasensitive behavior. PLoS ONE, 7,  e42296 [[http://dx.doi.org/10.1371/journal.pone.0042296|(full text)]] +Jörn Matthias Schmiedel, Ilka Maria Axmann, Stefan Legewie2012, Multi-target regulation by small RNAs synchronizes gene expression thresholds and may enhance ultrasensitive behavior. PLoS ONE, 7,  e42296  [[http://dx.doi.org/10.1371/journal.pone.0042296|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22927924%5Buid%5D|(abstract)]] 
-       +
  
-Michael, Fähling Anja Bondke, Persson BertramKlinger Edgar, Benko Andreas, Steege Mumtaz, Kasim Andreas, Patzak Pontus B, Persson Gunter, Wolf NilsBlüthgen Ralf, Mrowka 2012, Multilevel regulation of HIF-1 signaling by TTP. Mol. Biol. Cell, 23,  4129-41 [[http://dx.doi.org/10.1091/mbc.E11-11-0949|(full text)]] +Michael Fähling, Anja Bondke Persson, Bertram Klinger, Edgar Benko, Andreas Steege, Mumtaz Kasim, Andreas PatzakPontus B Persson, Gunter Wolf, Nils Blüthgen, Ralf Mrowka2012, Multilevel regulation of HIF-1 signaling by TTP. Mol. Biol. Cell, 23,  4129-41  [[http://dx.doi.org/10.1091/mbc.E11-11-0949|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22918951%5Buid%5D|(abstract)]] 
-       +
  
-IwonaStelniec-Klotz Stefan, Legewie OlegTchernitsa Franziska, Witzel Bertram, Klinger ChristineSers Hanspeter, Herzel Nils, Blüthgen Reinhold, Schäfer 2012, Reverse engineering a hierarchical regulatory network downstream of oncogenic KRAS. Mol. Syst. Biol., 8,  601 [[http://dx.doi.org/10.1038/msb.2012.32|(full text)]] +Iwona Stelniec-KlotzStefan Legewie, Oleg TchernitsaFranziska Witzel, Bertram Klinger, Christine Sers, Hanspeter Herzel, Nils Blüthgen, Reinhold Schäfer2012, Reverse engineering a hierarchical regulatory network downstream of oncogenic KRAS. Mol. Syst. Biol., 8,  601  [[http://dx.doi.org/10.1038/msb.2012.32|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22864383%5Buid%5D|(abstract)]] 
-       +
  
-Anne, Rediger René, Geissen BenediktSteuten Beate, Heilmann Rolf, Wagner Ilka MAxmann 2012, 6S RNA - an old issue became blue-green. Microbiology (Reading, Engl.), 158,  2480-91 [[http://dx.doi.org/|(full text)]] +Anne Rediger, René Geissen, Benedikt Steuten, Beate Heilmann, Rolf WagnerIlka M Axmann2012, 6S RNA - an old issue became blue-green. Microbiology (Reading, Engl.), 158,  2480-91  [[http://dx.doi.org/10.1099/mic.0.058958-0|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22767549%5Buid%5D|(abstract)]] 
-       +
  
-RomanZug Peter, Hammerstein 2012, Still a host of hosts for Wolbachia: analysis of recent data suggests that 40% of terrestrial arthropod species are infected. PLoS ONE, 7,  e38544 [[http://dx.doi.org/10.1371/journal.pone.0038544|(full text)]] +Roman Zug, Peter Hammerstein2012, Still a host of hosts for Wolbachia: analysis of recent data suggests that 40% of terrestrial arthropod species are infected. PLoS ONE, 7,  e38544  [[http://dx.doi.org/10.1371/journal.pone.0038544|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22685581%5Buid%5D|(abstract)]] 
-       +
  
-RolandSchaette RichardKempter 2012, Computational models of neurophysiological correlates of tinnitusFront Syst Neurosci6,  34 [[http://dx.doi.org/10.3389/fnsys.2012.00034|(full text)]] +Daniel GradyChristian Thiemann, Dirk Brockmann, 2012, Robust classification of salient links in complex networksNat Commun3,  864  [[http://dx.doi.org/10.1038/ncomms1847|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22643891%5Buid%5D|(abstract)]] 
-       +
  
-Elphège PNora Bryan RLajoie Edda G, Schulz Luca, Giorgetti Ikuhiro, Okamoto Nicolas, Servant Tristan, Piolot Nynke L, van Berkum Johannes, Meisig John, Sedat Joost, Gribnau Emmanuel, Barillot Nils, Blüthgen Job, Dekker Edith, Heard 2012, Spatial partitioning of the regulatory landscape of the X-inactivation centreNature485,  381-5 [[http://dx.doi.org/10.1038/nature11049|(full text)]] +Roland SchaetteRichard Kempter, 2012, Computational models of neurophysiological correlates of tinnitusFront Syst Neurosci6,  34  [[http://dx.doi.org/10.3389/fnsys.2012.00034|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22586377%5Buid%5D|(abstract)]] 
-       +
  
-RichardKempter ChristianLeibold GyörgyBuzsáki KamranDiba RobertSchmidt 2012, Quantifying circular-linear associations: hippocampal phase precessionJ. Neurosci. Methods207,  113-24 [[http://dx.doi.org/10.1016/j.jneumeth.2012.03.007|(full text)]] +Elphège P NoraBryan R LajoieEdda G SchulzLuca GiorgettiIkuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat, Joost Gribnau, Emmanuel Barillot, Nils Blüthgen, Job Dekker, Edith Heard, 2012, Spatial partitioning of the regulatory landscape of the X-inactivation centreNature485,  381-5  [[http://dx.doi.org/10.1038/nature11049|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22495304%5Buid%5D|(abstract)]] 
-       +
  
-Eric T, Reifenstein RichardKempter SusanneSchreiber Martin BStemmler Andreas V MHerz 2012, Grid cells in rat entorhinal cortex encode physical space with independent firing fields and phase precession at the single-trial level. Proc. NatlAcadSci. U.S.A., 109,  6301-[[http://dx.doi.org/10.1073/pnas.1109599109|(full text)]] +Richard Kempter, Christian LeiboldGyörgy Buzsáki, Kamran Diba, Robert Schmidt, 2012, Quantifying circular-linear associations: hippocampal phase precession. JNeurosciMethods207,  113-24  [[http://dx.doi.org/10.1016/j.jneumeth.2012.03.007|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22487609%5Buid%5D|(abstract)]] 
-       +
  
-HannaBendfeldt Manuela, Benary Tobias, Scheel Stefan, Frischbutter Anna, Abajyan Andreas, Radbruch Hanspeter, Herzel Ria, Baumgrass 2012, Stable IL-2 decision making by endogenous c-Fos amounts in peripheral memory T-helper cells. J. Biol. Chem., 287,  18386-97 [[http://dx.doi.org/10.1074/jbc.M112.358853|(full text)]] +Dirk Brockmann, 2012, Complex systems: Spotlight on mobilityNature484,  40-1  [[http://dx.doi.org/10.1038/484040a|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22481350%5Buid%5D|(abstract)]] 
-       +
  
-RalfSteuer HenningKnoop RainerMachné 2012, Modelling cyanobacteria: from metabolism to integrative models of phototrophic growthJExpBot., 63,  2259-74 [[http://dx.doi.org/10.1093/jxb/ers018|(full text)]] +Eric T ReifensteinRichard KempterSusanne Schreiber, Martin B Stemmler, Andreas V M Herz, 2012, Grid cells in rat entorhinal cortex encode physical space with independent firing fields and phase precession at the single-trial levelProcNatlAcad. Sci. U.S.A., 109,  6301-6  [[http://dx.doi.org/10.1073/pnas.1109599109|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22474395%5Buid%5D|(abstract)]] 
-       +
  
-ChristianBeck HenningKnoop Ilka MAxmann RalfSteuer 2012, The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganismsBMC Genomics13,  56 [[http://dx.doi.org/10.1186/1471-2164-13-56|(full text)]] +Hanna BendfeldtManuela BenaryTobias ScheelStefan Frischbutter, Anna Abajyan, Andreas Radbruch, Hanspeter Herzel, Ria Baumgrass, 2012, Stable IL-2 decision making by endogenous c-Fos amounts in peripheral memory T-helper cells. J. Biol. Chem., 287,  18386-97  [[http://dx.doi.org/10.1074/jbc.M112.358853|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22474330%5Buid%5D|(abstract)]] 
-       +
  
-Mariano ABelluscio Kenji, Mizuseki Robert, Schmidt Richard, Kempter György, Buzsáki 2012, Cross-frequency phase-phase coupling between θ and γ oscillations in the hippocampus. J. Neurosci., 32,  423-35 [[http://dx.doi.org/10.1523/JNEUROSCI.4122-11.2012|(full text)]] +Ralf Steuer, Henning Knoop, Rainer Machné, 2012, Modelling cyanobacteria: from metabolism to integrative models of phototrophic growth. J. Exp. Bot., 63,  2259-74  [[http://dx.doi.org/10.1093/jxb/ers018|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22450165%5Buid%5D|(abstract)]]  
-       + 
 +Christian Beck, Henning Knoop, Ilka M Axmann, Ralf Steuer, 2012, The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms. BMC Genomics, 13,  56  [[http://dx.doi.org/10.1186/1471-2164-13-56|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22300633%5Buid%5D|(abstract)]]  
 + 
 +Mariano A Belluscio, Kenji Mizuseki, Robert Schmidt, Richard Kempter, György Buzsáki2012, Cross-frequency phase-phase coupling between θ and γ oscillations in the hippocampus. J. Neurosci., 32,  423-35  [[http://dx.doi.org/10.1523/JNEUROSCI.4122-11.2012|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22238079%5Buid%5D|(abstract)]] 
  
  
 === 2011 === === 2011 ===
-Adrián E, Granada TrinitatCambras Antoni, Díez-Noguera Hanspeter, Herzel 2011, Circadian desynchronization. Interface Focus, 1,  153-66 [[http://dx.doi.org/10.1098/rsfs.2010.0002|(full text)]] +Adrián E Granada, Trinitat Cambras, Antoni Díez-Noguera, Hanspeter Herzel2011, Circadian desynchronization. Interface Focus, 1,  153-66  [[http://dx.doi.org/10.1098/rsfs.2010.0002|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22419981%5Buid%5D|(abstract)]] 
-       +
  
-Ralf, Steuer SteffenWaldherr Victor, Sourjik Markus, Kollmann 2011, Robust signal processing in living cells. PLoS Comput. Biol., 7,  e1002218 [[http://dx.doi.org/10.1371/journal.pcbi.1002218|(full text)]] +Ralf Steuer, Steffen Waldherr, Victor Sourjik, Markus Kollmann2011, Robust signal processing in living cells. PLoS Comput. Biol., 7,  e1002218  [[http://dx.doi.org/10.1371/journal.pcbi.1002218|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22215991%5Buid%5D|(abstract)]] 
-       +
  
-Angela, Relógio Pal O, Westermark ThomasWallach Katja, Schellenberg AchimKramer Hanspeter, Herzel 2011, Tuning the mammalian circadian clock: robust synergy of two loops. PLoS Comput. Biol., 7,  e1002309 [[http://dx.doi.org/10.1371/journal.pcbi.1002309|(full text)]] +Angela Relógio, Pal O Westermark, Thomas WallachKatja Schellenberg, Achim Kramer, Hanspeter Herzel2011, Tuning the mammalian circadian clock: robust synergy of two loops. PLoS Comput. Biol., 7,  e1002309  [[http://dx.doi.org/10.1371/journal.pcbi.1002309|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22194677%5Buid%5D|(abstract)]] 
-       +
  
-Nikolaus, Maier AlvaroTejero-Cantero Anja LDorrn Jochen, Winterer Prateep SBeed Genela, Morris Richard, Kempter James F APoulet Christian, Leibold Dietmar, Schmitz 2011, Coherent phasic excitation during hippocampal ripples. Neuron, 72,  137-52 [[http://dx.doi.org/10.1016/j.neuron.2011.08.016|(full text)]] +Nikolaus Maier, Alvaro Tejero-CanteroAnja L Dorrn, Jochen WintererPrateep S Beed, Genela MorrisRichard Kempter, James F A Poulet, Christian Leibold, Dietmar Schmitz2011, Coherent phasic excitation during hippocampal ripples. Neuron, 72,  137-52  [[http://dx.doi.org/10.1016/j.neuron.2011.08.016|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21982375%5Buid%5D|(abstract)]] 
-       +
  
-PascalSchulthess Nils, Blüthgen 2011, From reaction networks to information flow--using modular response analysis to track information in signaling networks. Meth. Enzymol., 500,  397-409 [[http://dx.doi.org/10.1016/B978-0-12-385118-5.00020-7|(full text)]] +Pascal Schulthess, Nils Blüthgen2011, From reaction networks to information flow--using modular response analysis to track information in signaling networks. Meth. Enzymol., 500,  397-409  [[http://dx.doi.org/10.1016/B978-0-12-385118-5.00020-7|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21943908%5Buid%5D|(abstract)]] 
-       +
  
-Jan, Clemens Olaf, Kutzki BernhardRonacher Susanne, Schreiber Sandra, Wohlgemuth 2011, Efficient transformation of an auditory population code in a small sensory system. Proc. Natl. Acad. Sci. U.S.A., 108,  13812-7 [[http://dx.doi.org/10.1073/pnas.1104506108|(full text)]] +Jan Clemens, Olaf Kutzki, Bernhard Ronacher, Susanne Schreiber, Sandra Wohlgemuth2011, Efficient transformation of an auditory population code in a small sensory system. Proc. Natl. Acad. Sci. U.S.A., 108,  13812-7  [[http://dx.doi.org/10.1073/pnas.1104506108|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21825132%5Buid%5D|(abstract)]] 
-       +
  
-K Laurence, Jost Sebastian, Haase DanielSmeets Nadine, Schrode Jörn MSchmiedel Bianca, Bertulat Hanspeter, Herzel Marion, Cremer M CristinaCardoso 2011, 3D-Image analysis platform monitoring relocation of pluripotency genes during reprogramming. Nucleic Acids Res., 39,  e113 [[http://dx.doi.org/10.1093/nar/gkr486|(full text)]] +K Laurence Jost, Sebastian Haase, Daniel Smeets, Nadine SchrodeJörn M Schmiedel, Bianca Bertulat, Hanspeter Herzel, Marion CremerM Cristina Cardoso2011, 3D-Image analysis platform monitoring relocation of pluripotency genes during reprogramming. Nucleic Acids Res., 39,  e113  [[http://dx.doi.org/10.1093/nar/gkr486|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21700670%5Buid%5D|(abstract)]] 
-       +
  
-Anuradha, Chauhan Stephan, Lorenzen HanspeterHerzel Samuel, Bernard 2011, Regulation of mammalian cell cycle progression in the regenerating liver. J. Theor. Biol., 283,  103-12 [[http://dx.doi.org/10.1016/j.jtbi.2011.05.026|(full text)]] +Anuradha Chauhan, Stephan Lorenzen, Hanspeter Herzel, Samuel Bernard2011, Regulation of mammalian cell cycle progression in the regenerating liver. J. Theor. Biol., 283,  103-12  [[http://dx.doi.org/10.1016/j.jtbi.2011.05.026|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21635899%5Buid%5D|(abstract)]] 
-       +
  
-RaphaelaFritsche-Guenther Franziska, Witzel AnjaSieber Ricarda, Herr Nadine, Schmidt SandraBraun Tilman, Brummer Christine, Sers Nils, Blüthgen 2011, Strong negative feedback from Erk to Raf confers robustness to MAPK signalling. Mol. Syst. Biol., 7,  489 [[http://dx.doi.org/10.1038/msb.2011.27|(full text)]] +Raphaela Fritsche-GuentherFranziska Witzel, Anja SieberRicarda Herr, Nadine Schmidt, Sandra Braun, Tilman Brummer, Christine Sers, Nils Blüthgen2011, Strong negative feedback from Erk to Raf confers robustness to MAPK signalling. Mol. Syst. Biol., 7,  489  [[http://dx.doi.org/10.1038/msb.2011.27|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21613978%5Buid%5D|(abstract)]] 
-       +
  
-Benjamin, Bossan ArnulfKoehncke Peter, Hammerstein 2011, A new model and method for understanding Wolbachia-induced cytoplasmic incompatibility. PLoS ONE, 6,  e19757 [[http://dx.doi.org/10.1371/journal.pone.0019757|(full text)]] +Benjamin Bossan, Arnulf Koehncke, Peter Hammerstein2011, A new model and method for understanding Wolbachia-induced cytoplasmic incompatibility. PLoS ONE, 6,  e19757  [[http://dx.doi.org/10.1371/journal.pone.0019757|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21572955%5Buid%5D|(abstract)]] 
-       +
  
-Christian, Klotz Thomas, Ziegler Ana SofiaFigueiredo Sebastian, Rausch Matthew RHepworth Nadja, Obsivac Christine, Sers Roland, Lang Peter, Hammerstein Richard, Lucius Susanne, Hartmann 2011, A helminth immunomodulator exploits host signaling events to regulate cytokine production in macrophages. PLoS Pathog., 7,  e1001248 [[http://dx.doi.org/10.1371/journal.ppat.1001248|(full text)]] +Christian Klotz, Thomas Ziegler, Ana Sofia Figueiredo, Sebastian RauschMatthew R Hepworth, Nadja Obsivac, Christine Sers, Roland Lang, Peter Hammerstein, Richard Lucius, Susanne Hartmann2011, A helminth immunomodulator exploits host signaling events to regulate cytokine production in macrophages. PLoS Pathog., 7,  e1001248  [[http://dx.doi.org/10.1371/journal.ppat.1001248|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21253577%5Buid%5D|(abstract)]] 
-       +
  
-Marc, Päpper Richard, Kempter ChristianLeibold 2011, Synaptic tagging, evaluation of memories, and the distal reward problem. Learn. Mem., 18,  58-70 [[http://dx.doi.org/10.1101/lm.2024811|(full text)]] +Marc Päpper, Richard Kempter, Christian Leibold2011, Synaptic tagging, evaluation of memories, and the distal reward problem. Learn. Mem., 18,  58-70  [[http://dx.doi.org/10.1101/lm.2024811|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21191043%5Buid%5D|(abstract)]] 
-       +
  
-EttoreMurabito Kieran, Smallbone Jonathan, Swinton Hans VWesterhoff Ralf, Steuer 2011, A probabilistic approach to identify putative drug targets in biochemical networks. J R Soc Interface, 8,  880-95 [[http://dx.doi.org/10.1098/rsif.2010.0540|(full text)]] +Ettore Murabito, Kieran Smallbone, Jonathan SwintonHans V Westerhoff, Ralf Steuer2011, A probabilistic approach to identify putative drug targets in biochemical networks. J R Soc Interface, 8,  880-95  [[http://dx.doi.org/10.1098/rsif.2010.0540|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21123256%5Buid%5D|(abstract)]] 
-       +
  
  
 === 2010 === === 2010 ===
-Adrián E, Granada TrinitatCambras Antoni, Díez-Noguera Hanspeter, Herzel 2011, Circadian desynchronization. Interface Focus, 1,  153-66 [[http://dx.doi.org/10.1098/rsfs.2010.0002|(full text)]] +Adrián E Granada, Trinitat Cambras, Antoni Díez-Noguera, Hanspeter Herzel2011, Circadian desynchronization. Interface Focus, 1,  153-66  [[http://dx.doi.org/10.1098/rsfs.2010.0002|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22419981%5Buid%5D|(abstract)]]  
-       + 
 +Marc Päpper, Richard Kempter, Christian Leibold, 2011, Synaptic tagging, evaluation of memories, and the distal reward problem. Learn. Mem., 18,  58-70  [[http://dx.doi.org/10.1101/lm.2024811|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21191043%5Buid%5D|(abstract)]] 
  
-MarcPäpper RichardKempter Christian, Leibold 2011Synaptic taggingevaluation of memoriesand the distal reward problemLearn. Mem., 18,  58-70 [[http://dx.doi.org/10.1101/lm.2024811|(full text)]] +Karsten JürchottRalf-Jürgen Kuban, Till Krech, Nils Blüthgen, Ulrike Stein, Wolfgang Walther, Christian FrieseSzymon M KiełbasaUte UngethümPer LundThomas Knösel, Wolfgang Kemmner, Markus Morkel, Johannes Fritzmann, Peter M Schlag, Walter Birchmeier, Tammo Krueger, Silke Sperling, Christine Sers, Hans-Dieter Royer, Hanspeter Herzel, Reinhold Schäfer, 2010, Identification of Y-box binding protein 1 as a core regulator of MEK/ERK pathway-dependent gene signatures in colorectal cancer cellsPLoS Genet., 6,  e1001231  [[http://dx.doi.org/10.1371/journal.pgen.1001231|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21170361%5Buid%5D|(abstract)]] 
-       +
  
-Karsten, Jürchott Ralf-Jürgen, Kuban Till, Krech Nils, Blüthgen Ulrike, Stein Wolfgang, Walther Christian, Friese Szymon M, Kiełbasa Ute, Ungethüm Per, Lund Thomas, Knösel Wolfgang, Kemmner Markus, Morkel Johannes, Fritzmann Peter M, Schlag Walter, Birchmeier Tammo, Krueger Silke, Sperling ChristineSers Hans-DieterRoyer HanspeterHerzel ReinholdSchäfer 2010, Identification of Y-box binding protein 1 as core regulator of MEK/ERK pathway-dependent gene signatures in colorectal cancer cells. PLoS Genet.6,  e1001231 [[http://dx.doi.org/10.1371/journal.pgen.1001231|(full text)]] +Christian ThiemannFabian TheisDaniel GradyRafael BruneDirk Brockmann, 2010, The structure of borders in small world. PLoS ONE5,  e15422  [[http://dx.doi.org/10.1371/journal.pone.0015422|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21124970%5Buid%5D|(abstract)]] 
-       +
  
-EttoreMurabito Kieran, Smallbone Jonathan, Swinton Hans VWesterhoff Ralf, Steuer 2011, A probabilistic approach to identify putative drug targets in biochemical networks. J R Soc Interface, 8,  880-95 [[http://dx.doi.org/10.1098/rsif.2010.0540|(full text)]] +Ettore Murabito, Kieran Smallbone, Jonathan SwintonHans V Westerhoff, Ralf Steuer2011, A probabilistic approach to identify putative drug targets in biochemical networks. J R Soc Interface, 8,  880-95  [[http://dx.doi.org/10.1098/rsif.2010.0540|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21123256%5Buid%5D|(abstract)]] 
-       +
  
-Ute, Abraham Adrián E, Granada Pål OWestermark Markus, Heine AchimKramer Hanspeter, Herzel 2010, Coupling governs entrainment range of circadian clocks. Mol. Syst. Biol., 6,  438 [[http://dx.doi.org/10.1038/msb.2010.92|(full text)]] +Ute Abraham, Adrián E Granada, Pål O WestermarkMarkus Heine, Achim Kramer, Hanspeter Herzel2010, Coupling governs entrainment range of circadian clocks. Mol. Syst. Biol., 6,  438  [[http://dx.doi.org/10.1038/msb.2010.92|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21119632%5Buid%5D|(abstract)]] 
-       +
  
-Paula TKuokkanen Hermann, Wagner Go, Ashida Catherine ECarr Richard, Kempter 2010, On the origin of the extracellular field potential in the nucleus laminaris of the barn owl (Tyto alba). J. Neurophysiol., 104,  2274-90 [[http://dx.doi.org/10.1152/jn.00395.2010|(full text)]] +Paula T Kuokkanen, Hermann Wagner, Go AshidaCatherine E Carr, Richard Kempter2010, On the origin of the extracellular field potential in the nucleus laminaris of the barn owl (Tyto alba). J. Neurophysiol., 104,  2274-90  [[http://dx.doi.org/10.1152/jn.00395.2010|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20685926%5Buid%5D|(abstract)]] 
-       +
  
-OlofLeimar Peter, Hammerstein 2010, Cooperation for direct fitness benefits. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 365,  2619-26 [[http://dx.doi.org/10.1098/rstb.2010.0116|(full text)]] +Olof Leimar, Peter Hammerstein2010, Cooperation for direct fitness benefits. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 365,  2619-26  [[http://dx.doi.org/10.1098/rstb.2010.0116|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20679106%5Buid%5D|(abstract)]] 
-       +
  
-ChristianBrettschneider Rebecca JRose Stefanie, Hertel Ilka M, Axmann Albert J RHeck Markus, Kollmann 2010, A sequestration feedback determines dynamics and temperature entrainment of the KaiABC circadian clock. Mol. Syst. Biol., 6,  389 [[http://dx.doi.org/10.1038/msb.2010.44|(full text)]] +Christian BrettschneiderRebecca J Rose, Stefanie HertelIlka M Axmann, Albert J R Heck, Markus Kollmann2010, A sequestration feedback determines dynamics and temperature entrainment of the KaiABC circadian clock. Mol. Syst. Biol., 6,  389  [[http://dx.doi.org/10.1038/msb.2010.44|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20631683%5Buid%5D|(abstract)]] 
-       +
  
-Roland, Schaette Ovidiu, König DirkHornig Manfred, Gross Richard, Kempter 2010, Acoustic stimulation treatments against tinnitus could be most effective when tinnitus pitch is within the stimulated frequency range. Hear. Res., 269,  95-101 [[http://dx.doi.org/10.1016/j.heares.2010.06.022|(full text)]] +Roland Schaette, Ovidiu König, Dirk Hornig, Manfred Gross, Richard Kempter2010, Acoustic stimulation treatments against tinnitus could be most effective when tinnitus pitch is within the stimulated frequency range. Hear. Res., 269,  95-101  [[http://dx.doi.org/10.1016/j.heares.2010.06.022|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20619332%5Buid%5D|(abstract)]] 
-       +
  
-Henning, Knoop Yvonne, Zilliges WolfgangLockau Ralf, Steuer 2010, The metabolic network of Synechocystis sp. PCC 6803: systemic properties of autotrophic growth. Plant Physiol., 154,  410-22 [[http://dx.doi.org/10.1104/pp.110.157198|(full text)]] +Henning Knoop, Yvonne Zilliges, Wolfgang Lockau, Ralf Steuer2010, The metabolic network of Synechocystis sp. PCC 6803: systemic properties of autotrophic growth. Plant Physiol., 154,  410-22  [[http://dx.doi.org/10.1104/pp.110.157198|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20616194%5Buid%5D|(abstract)]] 
-       +
  
-Szymon MKiełbasa Holger, Klein Helge G, Roider MartinVingron Nils, Blüthgen 2010, TransFind--predicting transcriptional regulators for gene sets. Nucleic Acids Res., 38,  W275-80 [[http://dx.doi.org/10.1093/nar/gkq438|(full text)]] +Szymon M Kiełbasa, Holger KleinHelge G Roider, Martin Vingron, Nils Blüthgen2010, TransFind--predicting transcriptional regulators for gene sets. Nucleic Acids Res., 38,  W275-80  [[http://dx.doi.org/10.1093/nar/gkq438|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20511592%5Buid%5D|(abstract)]] 
-       +
  
-Jignesh R, Parikh Bertram, Klinger YuXia Jarrod AMarto Nils, Blüthgen 2010, Discovering causal signaling pathways through gene-expression patterns. Nucleic Acids Res., 38,  W109-17 [[http://dx.doi.org/10.1093/nar/gkq424|(full text)]] +Jignesh R Parikh, Bertram Klinger, Yu XiaJarrod A Marto, Nils Blüthgen2010, Discovering causal signaling pathways through gene-expression patterns. Nucleic Acids Res., 38,  W109-17  [[http://dx.doi.org/10.1093/nar/gkq424|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20494976%5Buid%5D|(abstract)]] 
-       +
  
-Szymon MKiełbasa NilsBlüthgen Michael, Fähling Ralf, Mrowka 2010, Targetfinder.org: a resource for systematic discovery of transcription factor target genes. Nucleic Acids Res., 38,  W233-8 [[http://dx.doi.org/10.1093/nar/gkq374|(full text)]] +Szymon M KiełbasaNils Blüthgen, Michael Fähling, Ralf Mrowka2010, Targetfinder.org: a resource for systematic discovery of transcription factor target genes. Nucleic Acids Res., 38,  W233-8  [[http://dx.doi.org/10.1093/nar/gkq374|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20460454%5Buid%5D|(abstract)]] 
-       +
  
-NilsBlüthgen 2010, Transcriptional feedbacks in mammalian signal transduction pathways facilitate rapid and reliable protein induction. Mol Biosyst, 6,  1277-84 [[http://dx.doi.org/10.1039/c002598d|(full text)]] +Nils Blüthgen2010, Transcriptional feedbacks in mammalian signal transduction pathways facilitate rapid and reliable protein induction. Mol Biosyst, 6,  1277-84  [[http://dx.doi.org/10.1039/c002598d|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20449523%5Buid%5D|(abstract)]] 
-       +
  
-Samuel, Bernard BrankaCajavec Bernard Francis, Lévi Hanspeter, Herzel 2010, Tumor growth rate determines the timing of optimal chronomodulated treatment schedules. PLoS Comput. Biol., 6,  e1000712 [[http://dx.doi.org/10.1371/journal.pcbi.1000712|(full text)]] +Samuel Bernard, Branka Cajavec Bernard, Francis Lévi, Hanspeter Herzel2010, Tumor growth rate determines the timing of optimal chronomodulated treatment schedules. PLoS Comput. Biol., 6,  e1000712  [[http://dx.doi.org/10.1371/journal.pcbi.1000712|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20333244%5Buid%5D|(abstract)]] 
-       +
  
-Isao T, Tokuda Marco, Zemke MalteKob Hanspeter, Herzel 2010, Biomechanical modeling of register transitions and the role of vocal tract resonators. J. Acoust. Soc. Am., 127,  1528-36 [[http://dx.doi.org/10.1121/1.3299201|(full text)]] +Isao T Tokuda, Marco Zemke, Malte Kob, Hanspeter Herzel2010, Biomechanical modeling of register transitions and the role of vocal tract resonators. J. Acoust. Soc. Am., 127,  1528-36  [[http://dx.doi.org/10.1121/1.3299201|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20329853%5Buid%5D|(abstract)]] 
-       +
  
-Yue-Hien, Lee ManuelaBenary Ria, Baumgrass Hanspeter, Herzel 2010, Prediction of regulatory transcription factors in T helper cell differentiation and maintenance. Genome Inform, 22,  84-94 [[http://dx.doi.org/|(full text)]] +Yue-Hien Lee, Manuela Benary, Ria Baumgrass, Hanspeter Herzel2010, Prediction of regulatory transcription factors in T helper cell differentiation and maintenance. Genome Inform, 22,  84-94  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20238421%5Buid%5D|(abstract)]] 
-       +
  
-OlafWolkenhauer Charles, Auffray Simone, Baltrusch Nils, Blüthgen HelenByrne Marta, Cascante AndreaCiliberto Trevor, Dale Dirk, Drasdo David, Fell James EFerrell Daniel, Gallahan Robert, Gatenby Ulrich, Günther Brian DHarms Hanspeter, Herzel Christian, Junghanss Manfred, Kunz Ingeborgvan Leeuwen PhilippeLenormand Francis, Levi Michael, Linnebacher John, Lowengrub Philip KMaini Arif, Malik Katja, Rateitschak Owen, Sansom Reinhold, Schäfer Karsten, Schürrle Christine, Sers Santiago, Schnell Darryl, Shibata John, Tyson Julio, Vera Michael, White Boris, Zhivotovsky Robert, Jaster 2010, Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Res., 70,  12-3 [[http://dx.doi.org/10.1158/0008-5472.CAN-09-2676|(full text)]] +Olaf WolkenhauerCharles Auffray, Simone Baltrusch, Nils Blüthgen, Helen ByrneMarta Cascante, Andrea Ciliberto, Trevor Dale, Dirk Drasdo, David FellJames E Ferrell, Daniel Gallahan, Robert Gatenby, Ulrich GüntherBrian D HarmsHanspeter Herzel, Christian Junghanss, Manfred Kunz, Ingeborg van LeeuwenPhilippe Lenormand, Francis Levi, Michael Linnebacher, John LowengrubPhilip K Maini, Arif Malik, Katja Rateitschak, Owen Sansom, Reinhold Schäfer, Karsten Schürrle, Christine Sers, Santiago Schnell, Darryl Shibata, John Tyson, Julio Vera, Michael White, Boris Zhivotovsky, Robert Jaster2010, Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Res., 70,  12-3  [[http://dx.doi.org/10.1158/0008-5472.CAN-09-2676|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20028868%5Buid%5D|(abstract)]] 
-       +
  
-Erik, Arner Pål O, Westermark Kirsty LSpalding Tom, Britton MikaelRydén Jonas, Frisén Samuel, Bernard Peter, Arner 2010, Adipocyte turnover: relevance to human adipose tissue morphology. Diabetes, 59,  105-9 [[http://dx.doi.org/10.2337/db09-0942|(full text)]] +Erik Arner, Pål O Westermark, Kirsty L SpaldingTom Britton, Mikael Rydén, Jonas Frisén, Samuel Bernard, Peter Arner2010, Adipocyte turnover: relevance to human adipose tissue morphology. Diabetes, 59,  105-9  [[http://dx.doi.org/10.2337/db09-0942|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19846802%5Buid%5D|(abstract)]] 
-       +
  
  
 === 2009 === === 2009 ===
-OlafWolkenhauer Charles, Auffray Simone, Baltrusch Nils, Blüthgen HelenByrne Marta, Cascante AndreaCiliberto Trevor, Dale Dirk, Drasdo David, Fell James EFerrell Daniel, Gallahan Robert, Gatenby Ulrich, Günther Brian DHarms Hanspeter, Herzel Christian, Junghanss Manfred, Kunz Ingeborgvan Leeuwen PhilippeLenormand Francis, Levi Michael, Linnebacher John, Lowengrub Philip KMaini Arif, Malik Katja, Rateitschak Owen, Sansom Reinhold, Schäfer Karsten, Schürrle Christine, Sers Santiago, Schnell Darryl, Shibata John, Tyson Julio, Vera Michael, White Boris, Zhivotovsky Robert, Jaster 2010, Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Res., 70,  12-3 [[http://dx.doi.org/10.1158/0008-5472.CAN-09-2676|(full text)]] +Olaf WolkenhauerCharles Auffray, Simone Baltrusch, Nils Blüthgen, Helen ByrneMarta Cascante, Andrea Ciliberto, Trevor Dale, Dirk Drasdo, David FellJames E Ferrell, Daniel Gallahan, Robert Gatenby, Ulrich GüntherBrian D HarmsHanspeter Herzel, Christian Junghanss, Manfred Kunz, Ingeborg van LeeuwenPhilippe Lenormand, Francis Levi, Michael Linnebacher, John LowengrubPhilip K Maini, Arif Malik, Katja Rateitschak, Owen Sansom, Reinhold Schäfer, Karsten Schürrle, Christine Sers, Santiago Schnell, Darryl Shibata, John Tyson, Julio Vera, Michael White, Boris Zhivotovsky, Robert Jaster2010, Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Res., 70,  12-3  [[http://dx.doi.org/10.1158/0008-5472.CAN-09-2676|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20028868%5Buid%5D|(abstract)]] 
-       +
  
-Pål O, Westermark David KWelsh Hitoshi, Okamura Hanspeter, Herzel 2009, Quantification of circadian rhythms in single cells. PLoS Comput. Biol., 5,  e1000580 [[http://dx.doi.org/10.1371/journal.pcbi.1000580|(full text)]] +Pål O Westermark, David K Welsh, Hitoshi Okamura, Hanspeter Herzel2009, Quantification of circadian rhythms in single cells. PLoS Comput. Biol., 5,  e1000580  [[http://dx.doi.org/10.1371/journal.pcbi.1000580|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19956762%5Buid%5D|(abstract)]] 
-       +
  
-Erik, Arner Pål O, Westermark Kirsty LSpalding Tom, Britton MikaelRydén Jonas, Frisén Samuel, Bernard Peter, Arner 2010, Adipocyte turnover: relevance to human adipose tissue morphology. Diabetes, 59,  105-9 [[http://dx.doi.org/10.2337/db09-0942|(full text)]] +Erik Arner, Pål O Westermark, Kirsty L SpaldingTom Britton, Mikael Rydén, Jonas Frisén, Samuel Bernard, Peter Arner2010, Adipocyte turnover: relevance to human adipose tissue morphology. Diabetes, 59,  105-9  [[http://dx.doi.org/10.2337/db09-0942|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19846802%5Buid%5D|(abstract)]] 
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-Robert, Schmidt Kamran, Diba ChristianLeibold Dietmar, Schmitz György, Buzsáki Richard, Kempter 2009, Single-trial phase precession in the hippocampus. J. Neurosci., 29,  13232-41 [[http://dx.doi.org/10.1523/JNEUROSCI.2270-09.2009|(full text)]] +Robert Schmidt, Kamran Diba, Christian Leibold, Dietmar Schmitz, György Buzsáki, Richard Kempter2009, Single-trial phase precession in the hippocampus. J. Neurosci., 29,  13232-41  [[http://dx.doi.org/10.1523/JNEUROSCI.2270-09.2009|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19846711%5Buid%5D|(abstract)]] 
-       +
  
-Adrián EGranada Hanspeter, Herzel 2009, How to achieve fast entrainment? The timescale to synchronization. PLoS ONE, 4,  e7057 [[http://dx.doi.org/10.1371/journal.pone.0007057|(full text)]] +Adrián E Granada, Hanspeter Herzel2009, How to achieve fast entrainment? The timescale to synchronization. PLoS ONE, 4,  e7057  [[http://dx.doi.org/10.1371/journal.pone.0007057|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19774087%5Buid%5D|(abstract)]] 
-       +
  
-Frank JBruggeman Nils, Blüthgen Hans VWesterhoff 2009, Noise management by molecular networks. PLoS Comput. Biol., 5,  e1000506 [[http://dx.doi.org/10.1371/journal.pcbi.1000506|(full text)]] +Frank J Bruggeman, Nils BlüthgenHans V Westerhoff2009, Noise management by molecular networks. PLoS Comput. Biol., 5,  e1000506  [[http://dx.doi.org/10.1371/journal.pcbi.1000506|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19763166%5Buid%5D|(abstract)]] 
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-HermannWagner Sandra, Brill Richard, Kempter Catherine ECarr 2009, Auditory responses in the barn owl's nucleus laminaris to clicks: impulse response and signal analysis of neurophonic potential. J. Neurophysiol., 102,  1227-40 [[http://dx.doi.org/10.1152/jn.00092.2009|(full text)]] +Hermann Wagner, Sandra Brill, Richard KempterCatherine E Carr2009, Auditory responses in the barn owl's nucleus laminaris to clicks: impulse response and signal analysis of neurophonic potential. J. Neurophysiol., 102,  1227-40  [[http://dx.doi.org/10.1152/jn.00092.2009|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19535487%5Buid%5D|(abstract)]] 
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-Judith, Dannowski Matthias, Flor ArndtTelschow Peter, Hammerstein 2009, The effect of sibmating on the infection dynamics of male-killing bacteria. Evolution, 63,  2525-34 [[http://dx.doi.org/10.1111/j.1558-5646.2009.00749.x|(full text)]] +Judith Dannowski, Matthias Flor, Arndt Telschow, Peter Hammerstein2009, The effect of sibmating on the infection dynamics of male-killing bacteria. Evolution, 63,  2525-34  [[http://dx.doi.org/10.1111/j.1558-5646.2009.00749.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19519634%5Buid%5D|(abstract)]] 
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-Ilka M, Axmann Ulf, Dühring LuizaSeeliger Anne, Arnold Jens TVanselow Achim, Kramer Annegret, Wilde 2009, Biochemical evidence for a timing mechanism in prochlorococcus. J. Bacteriol., 191,  5342-7 [[http://dx.doi.org/10.1128/JB.00419-09|(full text)]] +Ilka M Axmann, Ulf Dühring, Luiza Seeliger, Anne ArnoldJens T Vanselow, Achim Kramer, Annegret Wilde2009, Biochemical evidence for a timing mechanism in prochlorococcus. J. Bacteriol., 191,  5342-7  [[http://dx.doi.org/10.1128/JB.00419-09|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19502405%5Buid%5D|(abstract)]] 
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-Ana Sofia, Figueiredo Thomas, Höfer Christian, Klotz ChristineSers Susanne, Hartmann Richard, Lucius Peter, Hammerstein 2009, Modelling and simulating interleukin-10 production and regulation by macrophages after stimulation with an immunomodulator of parasitic nematodes. FEBS J., 276,  3454-69 [[http://dx.doi.org/10.1111/j.1742-4658.2009.07068.x|(full text)]] +Ana Sofia Figueiredo, Thomas Höfer, Christian Klotz, Christine Sers, Susanne Hartmann, Richard Lucius, Peter Hammerstein2009, Modelling and simulating interleukin-10 production and regulation by macrophages after stimulation with an immunomodulator of parasitic nematodes. FEBS J., 276,  3454-69  [[http://dx.doi.org/10.1111/j.1742-4658.2009.07068.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19456864%5Buid%5D|(abstract)]] 
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-RolandSchaette Richard, Kempter 2009, Predicting tinnitus pitch from patients' audiograms with a computational model for the development of neuronal hyperactivity. J. Neurophysiol., 101,  3042-52 [[http://dx.doi.org/10.1152/jn.91256.2008|(full text)]] +Roland Schaette, Richard Kempter2009, Predicting tinnitus pitch from patients' audiograms with a computational model for the development of neuronal hyperactivity. J. Neurophysiol., 101,  3042-52  [[http://dx.doi.org/10.1152/jn.91256.2008|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19357344%5Buid%5D|(abstract)]] 
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-Katarzyna, Bozek Angela, Relógio Szymon MKielbasa Markus, Heine ChristofDame Achim, Kramer Hanspeter, Herzel 2009, Regulation of clock-controlled genes in mammals. PLoS ONE, 4,  e4882 [[http://dx.doi.org/10.1371/journal.pone.0004882|(full text)]] +Katarzyna Bozek, Angela Relógio, Szymon M KielbasaMarkus Heine, Christof Dame, Achim Kramer, Hanspeter Herzel2009, Regulation of clock-controlled genes in mammals. PLoS ONE, 4,  e4882  [[http://dx.doi.org/10.1371/journal.pone.0004882|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19287494%5Buid%5D|(abstract)]] 
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-Arnulf, Koehncke Arndt, Telschow John HWerren Peter, Hammerstein 2009, Life and death of an influential passenger: Wolbachia and the evolution of CI-modifiers by their hosts. PLoS ONE, 4,  e4425 [[http://dx.doi.org/10.1371/journal.pone.0004425|(full text)]] +Arnulf Koehncke, Arndt Telschow, John H Werren, Peter Hammerstein2009, Life and death of an influential passenger: Wolbachia and the evolution of CI-modifiers by their hosts. PLoS ONE, 4,  e4425  [[http://dx.doi.org/10.1371/journal.pone.0004425|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19209229%5Buid%5D|(abstract)]] 
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-SusanneSchreiber Inés, Samengo Andreas V MHerz 2009, Two distinct mechanisms shape the reliability of neural responses. J. Neurophysiol., 101,  2239-51 [[http://dx.doi.org/10.1152/jn.90711.2008|(full text)]] +Susanne Schreiber, Inés SamengoAndreas V M Herz2009, Two distinct mechanisms shape the reliability of neural responses. J. Neurophysiol., 101,  2239-51  [[http://dx.doi.org/10.1152/jn.90711.2008|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19193775%5Buid%5D|(abstract)]] 
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-Nils, Blüthgen Stefan, Legewie Szymon M, Kielbasa AnjaSchramme Oleg, Tchernitsa Jana, Keil Andrea, Solf Martin, Vingron Reinhold, Schäfer Hanspeter, Herzel Christine, Sers 2009, A systems biological approach suggests that transcriptional feedback regulation by dual-specificity phosphatase 6 shapes extracellular signal-related kinase activity in RAS-transformed fibroblasts. FEBS J., 276,  1024-35 [[http://dx.doi.org/10.1111/j.1742-4658.2008.06846.x|(full text)]] +Nils Blüthgen, Stefan Legewie, Szymon M Kielbasa, Anja Schramme, Oleg Tchernitsa, Jana Keil, Andrea Solf, Martin Vingron, Reinhold Schäfer, Hanspeter Herzel, Christine Sers2009, A systems biological approach suggests that transcriptional feedback regulation by dual-specificity phosphatase 6 shapes extracellular signal-related kinase activity in RAS-transformed fibroblasts. FEBS J., 276,  1024-35  [[http://dx.doi.org/10.1111/j.1742-4658.2008.06846.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19154344%5Buid%5D|(abstract)]] 
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-Sonja-Verena, Albers Nils-Kåre, Birkeland Arnold J M, Driessen SusanneGertig Patrick, Haferkamp Hans-PeterKlenk Theresa, Kouril Andrea, Manica Trong KPham Peter, Ruoff Christa, Schleper Dietmar, Schomburg Kieran JSharkey Bettina, Siebers Pawel, Sierocinski Ralf, Steuer John, van der Oost Hans VWesterhoff Patricia, Wieloch Phillip CWright Melanie, Zaparty 2009, SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation. Biochem. Soc. Trans., 37,  58-64 [[http://dx.doi.org/10.1042/BST0370058|(full text)]] +Sonja-Verena Albers, Nils-Kåre Birkeland, Arnold J M Driessen, Susanne Gertig, Patrick HaferkampHans-Peter Klenk, Theresa Kouril, Andrea ManicaTrong K Pham, Peter Ruoff, Christa Schleper, Dietmar SchomburgKieran J Sharkey, Bettina Siebers, Pawel Sierocinski, Ralf Steuer, John van der OostHans V Westerhoff, Patricia WielochPhillip C Wright, Melanie Zaparty2009, SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation. Biochem. Soc. Trans., 37,  58-64  [[http://dx.doi.org/10.1042/BST0370058|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19143602%5Buid%5D|(abstract)]] 
-       +
  
-Stefan, Legewie Christine, Sers HanspeterHerzel 2009, Kinetic mechanisms for overexpression insensitivity and oncogene cooperation. FEBS Lett., 583,  93-6 [[http://dx.doi.org/10.1016/j.febslet.2008.11.027|(full text)]] +Stefan Legewie, Christine Sers, Hanspeter Herzel2009, Kinetic mechanisms for overexpression insensitivity and oncogene cooperation. FEBS Lett., 583,  93-6  [[http://dx.doi.org/10.1016/j.febslet.2008.11.027|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19059249%5Buid%5D|(abstract)]] 
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 === 2008 === === 2008 ===
-Stefan, Legewie Christine, Sers HanspeterHerzel 2009, Kinetic mechanisms for overexpression insensitivity and oncogene cooperation. FEBS Lett., 583,  93-6 [[http://dx.doi.org/10.1016/j.febslet.2008.11.027|(full text)]] +Stefan Legewie, Christine Sers, Hanspeter Herzel2009, Kinetic mechanisms for overexpression insensitivity and oncogene cooperation. FEBS Lett., 583,  93-6  [[http://dx.doi.org/10.1016/j.febslet.2008.11.027|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19059249%5Buid%5D|(abstract)]] 
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-Markus JHerrgård Neil, Swainston Paul, Dobson Warwick B, Dunn K Yalçin, Arga MikkoArvas Nils, Blüthgen Simon, Borger Roeland, Costenoble Matthias, Heinemann Michael, Hucka Nicolas, Le Novère Peter, Li Wolfram, Liebermeister Monica LMo Ana PaulaOliveira Dina, Petranovic Stephen, Pettifer Evangelos, Simeonidis Kieran, Smallbone Irena, Spasić Dieter, Weichart Roger, Brent David SBroomhead Hans VWesterhoff Betül, Kirdar Merja, Penttilä Edda, Klipp Bernhard ØPalsson Uwe, Sauer Stephen GOliver Pedro, Mendes Jens, Nielsen Douglas BKell 2008, A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nat. Biotechnol., 26,  1155-60 [[http://dx.doi.org/10.1038/nbt1492|(full text)]] +Markus J HerrgårdNeil Swainston, Paul Dobson, Warwick B Dunn, K Yalçin Arga, Mikko Arvas, Nils Blüthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novère, Peter Li, Wolfram LiebermeisterMonica L MoAna Paula Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasić, Dieter Weichart, Roger BrentDavid S BroomheadHans V Westerhoff, Betül Kirdar, Merja Penttilä, Edda KlippBernhard Ø Palsson, Uwe SauerStephen G Oliver, Pedro Mendes, Jens NielsenDouglas B Kell2008, A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nat. Biotechnol., 26,  1155-60  [[http://dx.doi.org/10.1038/nbt1492|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18846089%5Buid%5D|(abstract)]] 
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-NilsBlüthgen Stefan, Legewie 2008, Systems analysis of MAPK signal transduction. Essays Biochem., 45,  95-107 [[http://dx.doi.org/10.1042/BSE0450095|(full text)]] +Nils Blüthgen, Stefan Legewie2008, Systems analysis of MAPK signal transduction. Essays Biochem., 45,  95-107  [[http://dx.doi.org/10.1042/BSE0450095|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18793126%5Buid%5D|(abstract)]] 
-       +
  
-Annamaria, Bevilacqua Stephen J, Wilkinson RichardDimelow Ettore, Murabito Samrina, Rehman Maria, Nardelli Karen, van Eunen Sergio, Rossell Frank JBruggeman Nils, Blüthgen Dirk, De Vos Jildau, Bouwman Barbara MBakker Hans VWesterhoff 2008, Vertical systems biology: from DNA to flux and back. SEB Exp Biol Ser, 61,  65-91 [[http://dx.doi.org/|(full text)]] +Annamaria Bevilacqua, Stephen J Wilkinson, Richard Dimelow, Ettore Murabito, Samrina Rehman, Maria Nardelli, Karen van Eunen, Sergio RossellFrank J Bruggeman, Nils Blüthgen, Dirk De Vos, Jildau BouwmanBarbara M BakkerHans V Westerhoff2008, Vertical systems biology: from DNA to flux and back. SEB Exp Biol Ser, 61,  65-91  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18709737%5Buid%5D|(abstract)]] 
-       +
  
-HanspeterHerzel Nils, Blüthgen 2008, Mathematical models in mammalian cell biology. Genome Biol., 9,  316 [[http://dx.doi.org/10.1186/gb-2008-9-7-316|(full text)]] +Hanspeter Herzel, Nils Blüthgen2008, Mathematical models in mammalian cell biology. Genome Biol., 9,  316  [[http://dx.doi.org/10.1186/gb-2008-9-7-316|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18638360%5Buid%5D|(abstract)]] 
-       +
  
-Stefan, Legewie Dennis, Dienst AnnegretWilde Hanspeter, Herzel Ilka MAxmann 2008, Small RNAs establish delays and temporal thresholds in gene expression. Biophys. J., 95,  3232-8 [[http://dx.doi.org/10.1529/biophysj.108.133819|(full text)]] +Stefan Legewie, Dennis Dienst, Annegret Wilde, Hanspeter HerzelIlka M Axmann2008, Small RNAs establish delays and temporal thresholds in gene expression. Biophys. J., 95,  3232-8  [[http://dx.doi.org/10.1529/biophysj.108.133819|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18599624%5Buid%5D|(abstract)]] 
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-Yutaka, Kobayashi Peter, Hammerstein ArndtTelschow 2008, The neutral effective migration rate in a mainland-island context. Theor Popul Biol, 74,  84-92 [[http://dx.doi.org/10.1016/j.tpb.2008.05.001|(full text)]] +Yutaka Kobayashi, Peter Hammerstein, Arndt Telschow2008, The neutral effective migration rate in a mainland-island context. Theor Popul Biol, 74,  84-92  [[http://dx.doi.org/10.1016/j.tpb.2008.05.001|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18550138%5Buid%5D|(abstract)]] 
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-Ralf, Mrowka Nils, Blüthgen MichaelFähling 2008, Seed-based systematic discovery of specific transcription factor target genes. FEBS J., 275,  3178-92 [[http://dx.doi.org/10.1111/j.1742-4658.2008.06471.x|(full text)]] +Ralf Mrowka, Nils Blüthgen, Michael Fähling2008, Seed-based systematic discovery of specific transcription factor target genes. FEBS J., 275,  3178-92  [[http://dx.doi.org/10.1111/j.1742-4658.2008.06471.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18485006%5Buid%5D|(abstract)]] 
-       +
  
-Stefan, Legewie Hanspeter, Herzel Hans VWesterhoff Nils, Blüthgen 2008, Recurrent design patterns in the feedback regulation of the mammalian signalling network. Mol. Syst. Biol., 4,  190 [[http://dx.doi.org/10.1038/msb.2008.29|(full text)]] +Stefan Legewie, Hanspeter Herzel, Hans V Westerhoff, Nils Blüthgen2008, Recurrent design patterns in the feedback regulation of the mammalian signalling network. Mol. Syst. Biol., 4,  190  [[http://dx.doi.org/10.1038/msb.2008.29|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18463614%5Buid%5D|(abstract)]] 
-       +
  
-Kirsty L, Spalding Erik, Arner Pål OWestermark Samuel, Bernard Bruce ABuchholz Olaf, Bergmann Lennart, Blomqvist Johan, Hoffstedt Erik, Näslund TomBritton Hernan, Concha Moustapha, Hassan Mikael, Rydén Jonas, Frisén Peter, Arner 2008, Dynamics of fat cell turnover in humans. Nature, 453,  783-7 [[http://dx.doi.org/10.1038/nature06902|(full text)]] +Kirsty L Spalding, Erik Arner, Pål O Westermark, Samuel BernardBruce A Buchholz, Olaf Bergmann, Lennart BlomqvistJohan Hoffstedt, Erik Näslund, Tom Britton, Hernan Concha, Moustapha Hassan, Mikael Rydén, Jonas Frisén, Peter Arner2008, Dynamics of fat cell turnover in humans. Nature, 453,  783-7  [[http://dx.doi.org/10.1038/nature06902|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18454136%5Buid%5D|(abstract)]] 
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-RolandSchaette Richard, Kempter 2008, Development of hyperactivity after hearing loss in a computational model of the dorsal cochlear nucleus depends on neuron response type. Hear. Res., 240,  57-72 [[http://dx.doi.org/10.1016/j.heares.2008.02.006|(full text)]] +Roland Schaette, Richard Kempter2008, Development of hyperactivity after hearing loss in a computational model of the dorsal cochlear nucleus depends on neuron response type. Hear. Res., 240,  57-72  [[http://dx.doi.org/10.1016/j.heares.2008.02.006|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18396381%5Buid%5D|(abstract)]] 
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-Isao TTokuda Jaromir, Horácek Jan GSvec Hanspeter, Herzel 2008, Bifurcations and chaos in register transitions of excised larynx experiments. Chaos, 18,  013102 [[http://dx.doi.org/10.1063/1.2825295|(full text)]] +Isao T Tokuda, Jaromir HorácekJan G Svec, Hanspeter Herzel2008, Bifurcations and chaos in register transitions of excised larynx experiments. Chaos, 18,  013102  [[http://dx.doi.org/10.1063/1.2825295|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18377053%5Buid%5D|(abstract)]] 
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-Roger J, Sullivan Edward HHagen Peter, Hammerstein 2008, Revealing the paradox of drug reward in human evolution. Proc. Biol. Sci., 275,  1231-41 [[http://dx.doi.org/10.1098/rspb.2007.1673|(full text)]] +Roger J Sullivan, Edward H Hagen, Peter Hammerstein2008, Revealing the paradox of drug reward in human evolution. Proc. Biol. Sci., 275,  1231-41  [[http://dx.doi.org/10.1098/rspb.2007.1673|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18353749%5Buid%5D|(abstract)]] 
-       +
  
-Anuradha, Chauhan Stefan, Legewie Pål OWestermark Stephan, Lorenzen Hanspeter, Herzel 2008, A mesoscale model of G1/S phase transition in liver regeneration. J. Theor. Biol., 252,  465-73 [[http://dx.doi.org/10.1016/j.jtbi.2008.01.020|(full text)]] +Anuradha Chauhan, Stefan Legewie, Pål O Westermark, Stephan Lorenzen, Hanspeter Herzel2008, A mesoscale model of G1/S phase transition in liver regeneration. J. Theor. Biol., 252,  465-73  [[http://dx.doi.org/10.1016/j.jtbi.2008.01.020|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18339403%5Buid%5D|(abstract)]] 
-       +
  
-Christian, Leibold Anja, Gundlfinger RobertSchmidt Kay, Thurley Dietmar, Schmitz Richard, Kempter 2008, Temporal compression mediated by short-term synaptic plasticity. Proc. Natl. Acad. Sci. U.S.A., 105,  4417-22 [[http://dx.doi.org/10.1073/pnas.0708711105|(full text)]] +Christian Leibold, Anja Gundlfinger, Robert Schmidt, Kay Thurley, Dietmar Schmitz, Richard Kempter2008, Temporal compression mediated by short-term synaptic plasticity. Proc. Natl. Acad. Sci. U.S.A., 105,  4417-22  [[http://dx.doi.org/10.1073/pnas.0708711105|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18337494%5Buid%5D|(abstract)]] 
-       +
  
-James C W, Locke Pål OWestermark Achim, Kramer Hanspeter, Herzel 2008, Global parameter search reveals design principles of the mammalian circadian clock. BMC Syst Biol, 2,  22 [[http://dx.doi.org/10.1186/1752-0509-2-22|(full text)]] +James C W Locke, Pål O Westermark, Achim Kramer, Hanspeter Herzel2008, Global parameter search reveals design principles of the mammalian circadian clock. BMC Syst Biol, 2,  22  [[http://dx.doi.org/10.1186/1752-0509-2-22|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18312618%5Buid%5D|(abstract)]] 
-       +
  
-Kirsten, Hilgenboecker Peter, Hammerstein PeterSchlattmann Arndt, Telschow John HWerren 2008, How many species are infected with Wolbachia?--A statistical analysis of current data. FEMS Microbiol. Lett., 281,  215-20 [[http://dx.doi.org/10.1111/j.1574-6968.2008.01110.x|(full text)]] +Kirsten Hilgenboecker, Peter Hammerstein, Peter Schlattmann, Arndt TelschowJohn H Werren2008, How many species are infected with Wolbachia?--A statistical analysis of current data. FEMS Microbiol. Lett., 281,  215-20  [[http://dx.doi.org/10.1111/j.1574-6968.2008.01110.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18312577%5Buid%5D|(abstract)]] 
-       +
  
-Matthias EFutschik Hanspeter, Herzel 2008, Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis. Bioinformatics, 24,  1063-9 [[http://dx.doi.org/10.1093/bioinformatics/btn072|(full text)]] +Matthias E Futschik, Hanspeter Herzel2008, Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis. Bioinformatics, 24,  1063-9  [[http://dx.doi.org/10.1093/bioinformatics/btn072|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18310054%5Buid%5D|(abstract)]] 
-       +
  
-Steven ABrown Dieter, Kunz Amelie, Dumas Pål O, Westermark Katja, Vanselow AmelyTilmann-Wahnschaffe Hanspeter, Herzel Achim, Kramer 2008, Molecular insights into human daily behavior. Proc. Natl. Acad. Sci. U.S.A., 105,  1602-7 [[http://dx.doi.org/10.1073/pnas.0707772105|(full text)]] +Steven A Brown, Dieter Kunz, Amelie DumasPål O Westermark, Katja Vanselow, Amely Tilmann-Wahnschaffe, Hanspeter Herzel, Achim Kramer2008, Molecular insights into human daily behavior. Proc. Natl. Acad. Sci. U.S.A., 105,  1602-7  [[http://dx.doi.org/10.1073/pnas.0707772105|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18227513%5Buid%5D|(abstract)]] 
-       +
  
-Manuela, Benary HannaBendfeldt Ria, Baumgrass Hanspeter, Herzel 2008, Modeling IL-2 gene expression in human regulatory T cells. Genome Inform, 20,  222-30 [[http://dx.doi.org/|(full text)]] +Manuela Benary, Hanna Bendfeldt, Ria Baumgrass, Hanspeter Herzel2008, Modeling IL-2 gene expression in human regulatory T cells. Genome Inform, 20,  222-30  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19425136%5Buid%5D|(abstract)]] 
-       +
  
-Kay, Thurley ChristianLeibold Anja, Gundlfinger Dietmar, Schmitz Richard, Kempter 2008, Phase precession through synaptic facilitation. Neural Comput, 20,  1285-324 [[http://dx.doi.org/|(full text)]] +Kay Thurley, Christian Leibold, Anja Gundlfinger, Dietmar Schmitz, Richard Kempter2008, Phase precession through synaptic facilitation. Neural Comput, 20,  1285-324  [[http://dx.doi.org/10.1162/neco.2008.07-06-292|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18085985%5Buid%5D|(abstract)]] 
-       +
  
-Coen P H, Elemans RiccardoZaccarelli Hanspeter, Herzel 2008, Biomechanics and control of vocalization in a non-songbird. J R Soc Interface, 5,  691-703 [[http://dx.doi.org/|(full text)]] +Coen P H Elemans, Riccardo Zaccarelli, Hanspeter Herzel2008, Biomechanics and control of vocalization in a non-songbird. J R Soc Interface, 5,  691-703  [[http://dx.doi.org/10.1098/rsif.2007.1237|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17999946%5Buid%5D|(abstract)]] 
-       +
  
-ChristianLeibold Richard, Kempter 2008, Sparseness constrains the prolongation of memory lifetime via synaptic metaplasticity. Cereb. Cortex, 18,  67-77 [[http://dx.doi.org/|(full text)]] +Christian Leibold, Richard Kempter2008, Sparseness constrains the prolongation of memory lifetime via synaptic metaplasticity. Cereb. Cortex, 18,  67-77  [[http://dx.doi.org/10.1093/cercor/bhm037|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17490993%5Buid%5D|(abstract)]] 
-       +
  
  
 === 2007 === === 2007 ===
-Matthias E, Futschik AnnaTschaut Gautam, Chaurasia Hanspeter, Herzel 2007, Graph-theoretical comparison reveals structural divergence of human protein interaction networks. Genome Inform, 18,  141-51 [[http://dx.doi.org/|(full text)]] +Matthias E Futschik, Anna Tschaut, Gautam Chaurasia, Hanspeter Herzel2007, Graph-theoretical comparison reveals structural divergence of human protein interaction networks. Genome Inform, 18,  141-51  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18546482%5Buid%5D|(abstract)]] 
-       +
  
-Katarzyna, Bozek Szymon MKiełbasa Achim, Kramer Hanspeter, Herzel 2007, Promoter analysis of Mammalian clock controlled genes. Genome Inform, 18,  65-74 [[http://dx.doi.org/|(full text)]] +Katarzyna Bozek, Szymon M Kiełbasa, Achim Kramer, Hanspeter Herzel2007, Promoter analysis of Mammalian clock controlled genes. Genome Inform, 18,  65-74  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18546475%5Buid%5D|(abstract)]] 
-       +
  
-Ilka M, Axmann StefanLegewie Hanspeter, Herzel 2007, A minimal circadian clock model. Genome Inform, 18,  54-64 [[http://dx.doi.org/|(full text)]] +Ilka M Axmann, Stefan Legewie, Hanspeter Herzel2007, A minimal circadian clock model. Genome Inform, 18,  54-64  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18546474%5Buid%5D|(abstract)]] 
-       +
  
-Szymon MKiełbasa Hanspeter, Herzel Ilka MAxmann 2007, Regulatory elements of marine cyanobacteria. Genome Inform, 18,  1-11 [[http://dx.doi.org/|(full text)]] +Szymon M Kiełbasa, Hanspeter HerzelIlka M Axmann2007, Regulatory elements of marine cyanobacteria. Genome Inform, 18,  1-11  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18546470%5Buid%5D|(abstract)]] 
-       +
  
-Sergio, Grimbs Joachim, Selbig SaschaBulik Hermann-GeorgHolzhütter Ralf, Steuer 2007, The stability and robustness of metabolic states: identifying stabilizing sites in metabolic networks. Mol. Syst. Biol., 3,  146 [[http://dx.doi.org/|(full text)]] +Sergio Grimbs, Joachim Selbig, Sascha BulikHermann-Georg Holzhütter, Ralf Steuer2007, The stability and robustness of metabolic states: identifying stabilizing sites in metabolic networks. Mol. Syst. Biol., 3,  146  [[http://dx.doi.org/10.1038/msb4100186|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18004279%5Buid%5D|(abstract)]] 
-       +
  
-Anja, Gundlfinger Christian, Leibold KatjaGebert Marion, Moisel Dietmar, Schmitz Richard, Kempter 2007, Differential modulation of short-term synaptic dynamics by long-term potentiation at mouse hippocampal mossy fibre synapses. J. Physiol. (Lond.), 585,  853-65 [[http://dx.doi.org/|(full text)]] +Anja Gundlfinger, Christian Leibold, Katja Gebert, Marion Moisel, Dietmar Schmitz, Richard Kempter2007, Differential modulation of short-term synaptic dynamics by long-term potentiation at mouse hippocampal mossy fibre synapses. J. Physiol. (Lond.), 585,  853-65  [[http://dx.doi.org/10.1113/jphysiol.2007.143925|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17962326%5Buid%5D|(abstract)]] 
-       +
  
-Björn, Voss Gregor, Gierga Ilka MAxmann Wolfgang RHess 2007, A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria. BMC Genomics, 8,  375 [[http://dx.doi.org/|(full text)]] +Björn Voss, Gregor Gierga, Ilka M AxmannWolfgang R Hess2007, A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria. BMC Genomics, 8,  375  [[http://dx.doi.org/10.1186/1471-2164-8-375|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17941988%5Buid%5D|(abstract)]] 
-       +
  
-Silke, Reischl Katja, Vanselow Pål OWestermark Nadine, Thierfelder BertMaier Hanspeter, Herzel Achim, Kramer 2007, Beta-TrCP1-mediated degradation of PERIOD2 is essential for circadian dynamics. J. Biol. Rhythms, 22,  375-86 [[http://dx.doi.org/|(full text)]] +Silke Reischl, Katja Vanselow, Pål O WestermarkNadine Thierfelder, Bert Maier, Hanspeter Herzel, Achim Kramer2007, Beta-TrCP1-mediated degradation of PERIOD2 is essential for circadian dynamics. J. Biol. Rhythms, 22,  375-86  [[http://dx.doi.org/10.1177/0748730407303926|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17876059%5Buid%5D|(abstract)]] 
-       +
  
-DebbieLindell Jacob DJaffe Maureen LColeman Matthias E, Futschik Ilka M, Axmann TrentRector Gregory, Kettler Matthew BSullivan Robert, Steen Wolfgang RHess George MChurch Sallie WChisholm 2007, Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature, 449,  83-6 [[http://dx.doi.org/|(full text)]] +Debbie LindellJacob D JaffeMaureen L ColemanMatthias E Futschik, Ilka M Axmann, Trent Rector, Gregory KettlerMatthew B Sullivan, Robert SteenWolfgang R HessGeorge M ChurchSallie W Chisholm2007, Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature, 449,  83-6  [[http://dx.doi.org/10.1038/nature06130|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17805294%5Buid%5D|(abstract)]] 
-       +
  
-Arndt, Telschow MatthiasFlor Yutaka, Kobayashi Peter, Hammerstein John HWerren 2007, Wolbachia-induced unidirectional cytoplasmic incompatibility and speciation: mainland-island model. PLoS ONE, 2,  e701 [[http://dx.doi.org/|(full text)]] +Arndt Telschow, Matthias Flor, Yutaka Kobayashi, Peter HammersteinJohn H Werren2007, Wolbachia-induced unidirectional cytoplasmic incompatibility and speciation: mainland-island model. PLoS ONE, 2,  e701  [[http://dx.doi.org/10.1371/journal.pone.0000701|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17684548%5Buid%5D|(abstract)]] 
-       +
  
-Ralf, Mrowka Andreas, Steege CharlotteKaps Hanspeter, Herzel Bernd JThiele Pontus BPersson Nils, Blüthgen 2007, Dissecting the action of an evolutionary conserved non-coding region on renin promoter activity. Nucleic Acids Res., 35,  5120-9 [[http://dx.doi.org/|(full text)]] +Ralf Mrowka, Andreas Steege, Charlotte Kaps, Hanspeter HerzelBernd J ThielePontus B Persson, Nils Blüthgen2007, Dissecting the action of an evolutionary conserved non-coding region on renin promoter activity. Nucleic Acids Res., 35,  5120-9  [[http://dx.doi.org/10.1093/nar/gkm535|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17660193%5Buid%5D|(abstract)]] 
-       +
  
-Ilka M, Axmann JuliaHoltzendorff Björn, Voss Philip, Kensche Wolfgang RHess 2007, Two distinct types of 6S RNA in Prochlorococcus. Gene, 406,  69-78 [[http://dx.doi.org/|(full text)]] +Ilka M Axmann, Julia Holtzendorff, Björn Voss, Philip KenscheWolfgang R Hess2007, Two distinct types of 6S RNA in Prochlorococcus. Gene, 406,  69-78  [[http://dx.doi.org/10.1016/j.gene.2007.06.011|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17640832%5Buid%5D|(abstract)]] 
-       +
  
-Isao T, Tokuda Jaromir, Horácek Jan GSvec Hanspeter, Herzel 2007, Comparison of biomechanical modeling of register transitions and voice instabilities with excised larynx experiments. J. Acoust. Soc. Am., 122,  519-31 [[http://dx.doi.org/|(full text)]] +Isao T Tokuda, Jaromir Horácek, Jan G Svec, Hanspeter Herzel2007, Comparison of biomechanical modeling of register transitions and voice instabilities with excised larynx experiments. J. Acoust. Soc. Am., 122,  519-31  [[http://dx.doi.org/10.1121/1.2741210|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17614509%5Buid%5D|(abstract)]] 
-       +
  
-RalfSteuer , Computational approaches to the topology, stability and dynamics of metabolic networks. Phytochemistry, 68,  2139-51 [[http://dx.doi.org/|(full text)]] +Ralf Steuer, Computational approaches to the topology, stability and dynamics of metabolic networks. Phytochemistry, 68,  2139-51  [[http://dx.doi.org/10.1016/j.phytochem.2007.04.041|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17574639%5Buid%5D|(abstract)]] 
-       +
  
-Stefan, Legewie BirgitSchoeberl Nils, Blüthgen Hanspeter, Herzel 2007, Competing docking interactions can bring about bistability in the MAPK cascade. Biophys. J., 93,  2279-88 [[http://dx.doi.org/|(full text)]] +Stefan Legewie, Birgit Schoeberl, Nils Blüthgen, Hanspeter Herzel2007, Competing docking interactions can bring about bistability in the MAPK cascade. Biophys. J., 93,  2279-88  [[http://dx.doi.org/10.1529/biophysj.107.109132|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17526574%5Buid%5D|(abstract)]] 
-       +
  
-ChristianLeibold Richard, Kempter 2008, Sparseness constrains the prolongation of memory lifetime via synaptic metaplasticity. Cereb. Cortex, 18,  67-77 [[http://dx.doi.org/|(full text)]] +Christian Leibold, Richard Kempter2008, Sparseness constrains the prolongation of memory lifetime via synaptic metaplasticity. Cereb. Cortex, 18,  67-77  [[http://dx.doi.org/10.1093/cercor/bhm037|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17490993%5Buid%5D|(abstract)]] 
-       +
  
-Samuel, Bernard DidierGonze Branka, Cajavec Hanspeter, Herzel Achim, Kramer 2007, Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus. PLoS Comput. Biol., 3,  e68 [[http://dx.doi.org/|(full text)]] +Samuel Bernard, Didier Gonze, Branka Cajavec, Hanspeter Herzel, Achim Kramer2007, Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus. PLoS Comput. Biol., 3,  e68  [[http://dx.doi.org/10.1371/journal.pcbi.0030068|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17432930%5Buid%5D|(abstract)]] 
-       +
  
-Sébastien, Clodong Ulf, Dühring LuizaKronk Annegret, Wilde IlkaAxmann Hanspeter, Herzel Markus, Kollmann 2007, Functioning and robustness of a bacterial circadian clock. Mol. Syst. Biol., 3,  90 [[http://dx.doi.org/|(full text)]] +Sébastien Clodong, Ulf Dühring, Luiza KronkAnnegret Wilde, Ilka Axmann, Hanspeter Herzel, Markus Kollmann2007, Functioning and robustness of a bacterial circadian clock. Mol. Syst. Biol., 3,  90  [[http://dx.doi.org/10.1038/msb4100128|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17353932%5Buid%5D|(abstract)]] 
-       +
  
-RalfSteuer Adriano NunesNesi Alisdair R, Fernie Thilo, Gross BerndBlasius Joachim, Selbig 2007, From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinformatics, 23,  1378-85 [[http://dx.doi.org/|(full text)]] +Ralf SteuerAdriano Nunes NesiAlisdair R Fernie, Thilo Gross, Bernd Blasius, Joachim Selbig2007, From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinformatics, 23,  1378-85  [[http://dx.doi.org/10.1093/bioinformatics/btm065|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17344242%5Buid%5D|(abstract)]] 
-       +
  
-Nico, Blüthgen FlorianMenzel Thomas, Hovestadt Brigitte, Fiala Nils, Blüthgen 2007, Specialization, constraints, and conflicting interests in mutualistic networks. Curr. Biol., 17,  341-6 [[http://dx.doi.org/|(full text)]] +Nico Blüthgen, Florian Menzel, Thomas Hovestadt, Brigitte Fiala, Nils Blüthgen2007, Specialization, constraints, and conflicting interests in mutualistic networks. Curr. Biol., 17,  341-6  [[http://dx.doi.org/10.1016/j.cub.2006.12.039|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17275300%5Buid%5D|(abstract)]] 
-       +
  
-Matthias E, Futschik GautamChaurasia Hanspeter, Herzel 2007, Comparison of human protein-protein interaction maps. Bioinformatics, 23,  605-11 [[http://dx.doi.org/|(full text)]] +Matthias E Futschik, Gautam Chaurasia, Hanspeter Herzel2007, Comparison of human protein-protein interaction maps. Bioinformatics, 23,  605-11  [[http://dx.doi.org/10.1093/bioinformatics/btl683|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17237052%5Buid%5D|(abstract)]] 
-       +
  
-Gautam, Chaurasia Yasir, Iqbal ChristianHänig Hanspeter, Herzel Erich EWanker Matthias EFutschik 2007, UniHI: an entry gate to the human protein interactome. Nucleic Acids Res., 35,  D590-4 [[http://dx.doi.org/|(full text)]] +Gautam Chaurasia, Yasir Iqbal, Christian Hänig, Hanspeter HerzelErich E WankerMatthias E Futschik2007, UniHI: an entry gate to the human protein interactome. Nucleic Acids Res., 35,  D590-4  [[http://dx.doi.org/10.1093/nar/gkl817|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17158159%5Buid%5D|(abstract)]] 
-       +
  
-Ralf, Steuer KatjaMorgenthal Wolfram, Weckwerth Joachim, Selbig 2007, A gentle guide to the analysis of metabolomic data. Methods Mol. Biol., 358,  105-26 [[http://dx.doi.org/|(full text)]] +Ralf Steuer, Katja Morgenthal, Wolfram Weckwerth, Joachim Selbig2007, A gentle guide to the analysis of metabolomic data. Methods Mol. Biol., 358,  105-26  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17035683%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1007/978-1-59745-244-1_7|(full text)]] 
-       +
  
-Pål O, Westermark Jeanette Hellgren, Kotaleski AnneliBjörklund Valdemar, Grill Anders, Lansner 2007, A mathematical model of the mitochondrial NADH shuttles and anaplerosis in the pancreatic beta-cell. Am. J. Physiol. Endocrinol. Metab., 292,  E373-93 [[http://dx.doi.org/|(full text)]] +Pål O Westermark, Jeanette Hellgren Kotaleski, Anneli Björklund, Valdemar Grill, Anders Lansner2007, A mathematical model of the mitochondrial NADH shuttles and anaplerosis in the pancreatic beta-cell. Am. J. Physiol. Endocrinol. Metab., 292,  E373-93  [[http://dx.doi.org/10.1152/ajpendo.00589.2005|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16849626%5Buid%5D|(abstract)]] 
-       +
  
  
 === 2006 === === 2006 ===
-Samuel, Bernard HanspeterHerzel 2006, Why do cells cycle with a 24 hour period? Genome Inform, 17,  72-9 [[http://dx.doi.org/|(full text)]] +Samuel Bernard, Hanspeter Herzel2006, Why do cells cycle with a 24 hour period? Genome Inform, 17,  72-9  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17503357%5Buid%5D|(abstract)]] 
-       +
  
-GautamChaurasia Hanspeter, Herzel Erich EWanker Matthias EFutschik 2006, Systematic functional assessment of human protein-protein interaction maps. Genome Inform, 17,  36-45 [[http://dx.doi.org/|(full text)]] +Gautam Chaurasia, Hanspeter HerzelErich E WankerMatthias E Futschik2006, Systematic functional assessment of human protein-protein interaction maps. Genome Inform, 17,  36-45  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17503354%5Buid%5D|(abstract)]] 
-       +
  
-Gautam, Chaurasia Yasir, Iqbal ChristianHänig Hanspeter, Herzel Erich EWanker Matthias EFutschik 2007, UniHI: an entry gate to the human protein interactome. Nucleic Acids Res., 35,  D590-4 [[http://dx.doi.org/|(full text)]] +Gautam Chaurasia, Yasir Iqbal, Christian Hänig, Hanspeter HerzelErich E WankerMatthias E Futschik2007, UniHI: an entry gate to the human protein interactome. Nucleic Acids Res., 35,  D590-4  [[http://dx.doi.org/10.1093/nar/gkl817|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17158159%5Buid%5D|(abstract)]] 
-       +
  
-NilsBlüthgen 2006, Sequestration shapes the response of signal transduction cascades. IUBMB Life, 58,  659-63 [[http://dx.doi.org/|(full text)]] +Nils Blüthgen2006, Sequestration shapes the response of signal transduction cascades. IUBMB Life, 58,  659-63  [[http://dx.doi.org/10.1080/15216540600994340|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17085386%5Buid%5D|(abstract)]] 
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-Katja, Vanselow Jens T, Vanselow Pål OWestermark Silke, Reischl Bert, Maier ThomasKorte Andreas, Herrmann Hanspeter, Herzel Andreas, Schlosser Achim, Kramer 2006, Differential effects of PER2 phosphorylation: molecular basis for the human familial advanced sleep phase syndrome (FASPS). Genes Dev., 20,  2660-72 [[http://dx.doi.org/|(full text)]] +Katja Vanselow, Jens T Vanselow, Pål O WestermarkSilke Reischl, Bert Maier, Thomas Korte, Andreas Herrmann, Hanspeter Herzel, Andreas Schlosser, Achim Kramer2006, Differential effects of PER2 phosphorylation: molecular basis for the human familial advanced sleep phase syndrome (FASPS). Genes Dev., 20,  2660-72  [[http://dx.doi.org/10.1101/gad.397006|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16983144%5Buid%5D|(abstract)]] 
-       +
  
-Stefan, Legewie NilsBlüthgen Hanspeter, Herzel 2006, Mathematical modeling identifies inhibitors of apoptosis as mediators of positive feedback and bistability. PLoS Comput. Biol., 2,  e120 [[http://dx.doi.org/|(full text)]] +Stefan Legewie, Nils Blüthgen, Hanspeter Herzel2006, Mathematical modeling identifies inhibitors of apoptosis as mediators of positive feedback and bistability. PLoS Comput. Biol., 2,  e120  [[http://dx.doi.org/10.1371/journal.pcbi.0020120|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16978046%5Buid%5D|(abstract)]] 
-       +
  
-Ovidiu, König RolandSchaette Richard, Kempter Manfred, Gross 2006, Course of hearing loss and occurrence of tinnitus. Hear. Res., 221,  59-64 [[http://dx.doi.org/|(full text)]] +Ovidiu König, Roland Schaette, Richard Kempter, Manfred Gross2006, Course of hearing loss and occurrence of tinnitus. Hear. Res., 221,  59-64  [[http://dx.doi.org/10.1016/j.heares.2006.07.007|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16962270%5Buid%5D|(abstract)]] 
-       +
  
-Ralf, Steuer PeterHumburg Joachim, Selbig 2006, Validation and functional annotation of expression-based clusters based on gene ontology. BMC Bioinformatics, 7,  380 [[http://dx.doi.org/|(full text)]] +Ralf Steuer, Peter Humburg, Joachim Selbig2006, Validation and functional annotation of expression-based clusters based on gene ontology. BMC Bioinformatics, 7,  380  [[http://dx.doi.org/10.1186/1471-2105-7-380|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16911788%5Buid%5D|(abstract)]] 
-       +
  
-Nico, Blüthgen FlorianMenzel Nils, Blüthgen 2006, Measuring specialization in species interaction networks. BMC Ecol., 6,  9 [[http://dx.doi.org/|(full text)]] +Nico Blüthgen, Florian Menzel, Nils Blüthgen2006, Measuring specialization in species interaction networks. BMC Ecol., 6,  9  [[http://dx.doi.org/10.1186/1472-6785-6-9|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16907983%5Buid%5D|(abstract)]] 
-       +
  
-Ralf, Steuer Thilo, Gross JoachimSelbig Bernd, Blasius 2006, Structural kinetic modeling of metabolic networks. Proc. Natl. Acad. Sci. U.S.A., 103,  11868-73 [[http://dx.doi.org/|(full text)]] +Ralf Steuer, Thilo Gross, Joachim Selbig, Bernd Blasius2006, Structural kinetic modeling of metabolic networks. Proc. Natl. Acad. Sci. U.S.A., 103,  11868-73  [[http://dx.doi.org/10.1073/pnas.0600013103|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16880395%5Buid%5D|(abstract)]] 
-       +
  
-Pål O, Westermark Jeanette Hellgren, Kotaleski AnneliBjörklund Valdemar, Grill Anders, Lansner 2007, A mathematical model of the mitochondrial NADH shuttles and anaplerosis in the pancreatic beta-cell. Am. J. Physiol. Endocrinol. Metab., 292,  E373-93 [[http://dx.doi.org/|(full text)]] +Pål O Westermark, Jeanette Hellgren Kotaleski, Anneli Björklund, Valdemar Grill, Anders Lansner2007, A mathematical model of the mitochondrial NADH shuttles and anaplerosis in the pancreatic beta-cell. Am. J. Physiol. Endocrinol. Metab., 292,  E373-93  [[http://dx.doi.org/10.1152/ajpendo.00589.2005|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16849626%5Buid%5D|(abstract)]] 
-       +
  
-RolandSchaette Richard, Kempter 2006, Development of tinnitus-related neuronal hyperactivity through homeostatic plasticity after hearing loss: a computational model. Eur. J. Neurosci., 23,  3124-38 [[http://dx.doi.org/|(full text)]] +Roland Schaette, Richard Kempter2006, Development of tinnitus-related neuronal hyperactivity through homeostatic plasticity after hearing loss: a computational model. Eur. J. Neurosci., 23,  3124-38  [[http://dx.doi.org/10.1111/j.1460-9568.2006.04774.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16820003%5Buid%5D|(abstract)]] 
-       +
  
-Lokesh, Kumar MatthiasFutschik Hanspeter, Herzel 2006, DNA motifs and sequence periodicities. In Silico Biol. (Gedrukt), 6,  71-8 [[http://dx.doi.org/|(full text)]] +Lokesh Kumar, Matthias Futschik, Hanspeter Herzel2006, DNA motifs and sequence periodicities. In Silico Biol. (Gedrukt), 6,  71-8  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16789915%5Buid%5D|(abstract)]] 
-       +
  
-RalfSteuer 2006, Review: on the analysis and interpretation of correlations in metabolomic data. Brief. Bioinformatics, 7,  151-8 [[http://dx.doi.org/|(full text)]] +Ralf Steuer2006, Review: on the analysis and interpretation of correlations in metabolomic data. Brief. Bioinformatics, 7,  151-8  [[http://dx.doi.org/10.1093/bib/bbl009|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16772265%5Buid%5D|(abstract)]] 
-       +
  
-OlofLeimar Peter, Hammerstein Tom J MVan Dooren 2006, A new perspective on developmental plasticity and the principles of adaptive morph determination. Am. Nat., 167,  367-76 [[http://dx.doi.org/|(full text)]] +Olof Leimar, Peter HammersteinTom J M Van Dooren2006, A new perspective on developmental plasticity and the principles of adaptive morph determination. Am. Nat., 167,  367-76  [[http://dx.doi.org/10.1086/499566|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16673345%5Buid%5D|(abstract)]] 
-       +
  
-UlfDühring Ilka MAxmann Wolfgang RHess Annegret, Wilde 2006, An internal antisense RNA regulates expression of the photosynthesis gene isiA. Proc. Natl. Acad. Sci. U.S.A., 103,  7054-8 [[http://dx.doi.org/|(full text)]] +Ulf DühringIlka M AxmannWolfgang R Hess, Annegret Wilde2006, An internal antisense RNA regulates expression of the photosynthesis gene isiA. Proc. Natl. Acad. Sci. U.S.A., 103,  7054-8  [[http://dx.doi.org/10.1073/pnas.0600927103|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16636284%5Buid%5D|(abstract)]] 
-       +
  
-Samuel, Bernard Branka, Cajavec LaurentPujo-Menjouet Michael CMackey Hanspeter, Herzel 2006, Modelling transcriptional feedback loops: the role of Gro/TLE1 in Hes1 oscillations. Philos Trans A Math Phys Eng Sci, 364,  1155-70 [[http://dx.doi.org/|(full text)]] +Samuel Bernard, Branka Cajavec, Laurent Pujo-MenjouetMichael C Mackey, Hanspeter Herzel2006, Modelling transcriptional feedback loops: the role of Gro/TLE1 in Hes1 oscillations. Philos Trans A Math Phys Eng Sci, 364,  1155-70  [[http://dx.doi.org/10.1098/rsta.2006.1761|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16608701%5Buid%5D|(abstract)]] 
-       +
  
-ChristianLeibold Richard, Kempter 2006, Memory capacity for sequences in a recurrent network with biological constraints. Neural Comput, 18,  904-41 [[http://dx.doi.org/|(full text)]] +Christian Leibold, Richard Kempter2006, Memory capacity for sequences in a recurrent network with biological constraints. Neural Comput, 18,  904-41  [[http://dx.doi.org/10.1162/089976606775774714|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16494695%5Buid%5D|(abstract)]] 
-       +
  
-Nils, Blüthgen Frank JBruggeman Stefan, Legewie Hanspeter, Herzel Hans VWesterhoff Boris NKholodenko 2006, Effects of sequestration on signal transduction cascades. FEBS J., 273,  895-906 [[http://dx.doi.org/|(full text)]] +Nils Blüthgen, Frank J Bruggeman, Stefan Legewie, Hanspeter HerzelHans V WesterhoffBoris N Kholodenko2006, Effects of sequestration on signal transduction cascades. FEBS J., 273,  895-906  [[http://dx.doi.org/10.1111/j.1742-4658.2006.05105.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16478465%5Buid%5D|(abstract)]] 
-       +
  
-Edward HHagen Peter, Hammerstein 2006, Game theory and human evolution: a critique of some recent interpretations of experimental games. Theor Popul Biol, 69,  339-48 [[http://dx.doi.org/|(full text)]] +Edward H Hagen, Peter Hammerstein2006, Game theory and human evolution: a critique of some recent interpretations of experimental games. Theor Popul Biol, 69,  339-48  [[http://dx.doi.org/10.1016/j.tpb.2005.09.005|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16458945%5Buid%5D|(abstract)]] 
-       +
  
-Branka, Cajavec HanspeterHerzel Samuel, Bernard 2006, Death of neuronal clusters contributes to variance of age at onset in Huntington's disease. Neurogenetics, 7,  21-5 [[http://dx.doi.org/|(full text)]] +Branka Cajavec, Hanspeter Herzel, Samuel Bernard2006, Death of neuronal clusters contributes to variance of age at onset in Huntington's disease. Neurogenetics, 7,  21-5  [[http://dx.doi.org/10.1007/s10048-005-0025-x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16416264%5Buid%5D|(abstract)]] 
-       +
  
-Obul Reddy, Bandapalli Martina, Geheeb Dennis, Kobelt KatrinKuehnle Sefer, Elezkurtaj Jens, Herrmann Axel MGressner Ralf, Weiskirchen Dieter, Beule Nils, Blüthgen Hanspeter, Herzel Claudia, Franke Karsten, Brand 2006, Global analysis of host tissue gene expression in the invasive front of colorectal liver metastases. Int. J. Cancer, 118,  74-89 [[http://dx.doi.org/|(full text)]] +Obul Reddy Bandapalli, Martina Geheeb, Dennis Kobelt, Katrin KuehnleSefer Elezkurtaj, Jens Herrmann, Axel M Gressner, Ralf Weiskirchen, Dieter Beule, Nils Blüthgen, Hanspeter Herzel, Claudia Franke, Karsten Brand2006, Global analysis of host tissue gene expression in the invasive front of colorectal liver metastases. Int. J. Cancer, 118,  74-89  [[http://dx.doi.org/10.1002/ijc.21307|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16080196%5Buid%5D|(abstract)]] 
-       +
  
  
 === 2005 === === 2005 ===
-PeterHammerstein Edward HHagen 2005, The second wave of evolutionary economics in biology. Trends Ecol. Evol. (Amst.), 20,  604-9 [[http://dx.doi.org/|(full text)]] +Peter HammersteinEdward H Hagen2005, The second wave of evolutionary economics in biology. Trends Ecol. Evol. (Amst.), 20,  604-9  [[http://dx.doi.org/10.1016/j.tree.2005.07.012|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16701443%5Buid%5D|(abstract)]] 
-       +
  
-Branka, Cajavec SamuelBernard Hanspeter, Herzel 2005, Aggregation in Huntington's disease: insights through modelling. Genome Inform, 16,  262-71 [[http://dx.doi.org/|(full text)]] +Branka Cajavec, Samuel Bernard, Hanspeter Herzel2005, Aggregation in Huntington's disease: insights through modelling. Genome Inform, 16,  262-71  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16362929%5Buid%5D|(abstract)]] 
-       +
  
-Nils, Blüthgen KarstenBrand Branka, Cajavec Maciej, Swat Hanspeter, Herzel Dieter, Beule 2005, Biological profiling of gene groups utilizing Gene Ontology. Genome Inform, 16,  106-15 [[http://dx.doi.org/|(full text)]] +Nils Blüthgen, Karsten Brand, Branka Cajavec, Maciej Swat, Hanspeter Herzel, Dieter Beule2005, Biological profiling of gene groups utilizing Gene Ontology. Genome Inform, 16,  106-15  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16362912%5Buid%5D|(abstract)]] 
-       +
  
-Arndt, Telschow PeterHammerstein John HWerren 2005, The effect of Wolbachia versus genetic incompatibilities on reinforcement and speciation. Evolution, 59,  1607-19 [[http://dx.doi.org/|(full text)]] +Arndt Telschow, Peter HammersteinJohn H Werren2005, The effect of Wolbachia versus genetic incompatibilities on reinforcement and speciation. Evolution, 59,  1607-19  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16329235%5Buid%5D|(abstract)]] 
-       +
  
-Stefan, Legewie NilsBlüthgen Reinhold, Schäfer Hanspeter, Herzel 2005, Ultrasensitization: switch-like regulation of cellular signaling by transcriptional induction. PLoS Comput. Biol., 1,  e54 [[http://dx.doi.org/|(full text)]] +Stefan Legewie, Nils Blüthgen, Reinhold Schäfer, Hanspeter Herzel2005, Ultrasensitization: switch-like regulation of cellular signaling by transcriptional induction. PLoS Comput. Biol., 1,  e54  [[http://dx.doi.org/10.1371/journal.pcbi.0010054|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16261195%5Buid%5D|(abstract)]] 
-       +
  
-Szymon M, Kielbasa DidierGonze Hanspeter, Herzel 2005, Measuring similarities between transcription factor binding sites. BMC Bioinformatics, 6,  237 [[http://dx.doi.org/|(full text)]] +Szymon M Kielbasa, Didier Gonze, Hanspeter Herzel2005, Measuring similarities between transcription factor binding sites. BMC Bioinformatics, 6,  237  [[http://dx.doi.org/10.1186/1471-2105-6-237|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16191190%5Buid%5D|(abstract)]] 
-       +
  
-Ilka M, Axmann PhilipKensche Jörg, Vogel Stefan, Kohl Hanspeter, Herzel Wolfgang RHess 2005, Identification of cyanobacterial non-coding RNAs by comparative genome analysis. Genome Biol., 6,  R73 [[http://dx.doi.org/|(full text)]] +Ilka M Axmann, Philip Kensche, Jörg Vogel, Stefan Kohl, Hanspeter HerzelWolfgang R Hess2005, Identification of cyanobacterial non-coding RNAs by comparative genome analysis. Genome Biol., 6,  R73  [[http://dx.doi.org/10.1186/gb-2005-6-9-r73|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16168080%5Buid%5D|(abstract)]] 
-       +
  
-Axel, Kowald Marina, Jendrach SandraPohl Jürgen, Bereiter-Hahn Peter, Hammerstein 2005, On the relevance of mitochondrial fusions for the accumulation of mitochondrial deletion mutants: a modelling study. Aging Cell, 4,  273-83 [[http://dx.doi.org/|(full text)]] +Axel Kowald, Marina Jendrach, Sandra Pohl, Jürgen Bereiter-Hahn, Peter Hammerstein2005, On the relevance of mitochondrial fusions for the accumulation of mitochondrial deletion mutants: a modelling study. Aging Cell, 4,  273-83  [[http://dx.doi.org/10.1111/j.1474-9726.2005.00169.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16164426%5Buid%5D|(abstract)]] 
-       +
  
-David T, Blake FabrizioStrata Richard, Kempter Michael MMerzenich 2005, Experience-dependent plasticity in S1 caused by noncoincident inputs. J. Neurophysiol., 94,  2239-50 [[http://dx.doi.org/|(full text)]] +David T Blake, Fabrizio Strata, Richard KempterMichael M Merzenich2005, Experience-dependent plasticity in S1 caused by noncoincident inputs. J. Neurophysiol., 94,  2239-50  [[http://dx.doi.org/10.1152/jn.00172.2005|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16105958%5Buid%5D|(abstract)]] 
-       +
  
-Stefan, Legewie NilsBlüthgen Hanspeter, Herzel 2005, Quantitative analysis of ultrasensitive responses. FEBS J., 272,  4071-9 [[http://dx.doi.org/|(full text)]] +Stefan Legewie, Nils Blüthgen, Hanspeter Herzel2005, Quantitative analysis of ultrasensitive responses. FEBS J., 272,  4071-9  [[http://dx.doi.org/10.1111/j.1742-4658.2005.04818.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16098190%5Buid%5D|(abstract)]] 
-       +
  
-Marina, Jendrach Sandra, Pohl MonikaVöth Axel, Kowald PeterHammerstein Jürgen, Bereiter-Hahn , Morpho-dynamic changes of mitochondria during ageing of human endothelial cells. Mech. Ageing Dev., 126,  813-21 [[http://dx.doi.org/|(full text)]] +Marina Jendrach, Sandra Pohl, Monika VöthAxel Kowald, Peter Hammerstein, Jürgen Bereiter-Hahn, Morpho-dynamic changes of mitochondria during ageing of human endothelial cells. Mech. Ageing Dev., 126,  813-21  [[http://dx.doi.org/10.1016/j.mad.2005.03.002|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15888336%5Buid%5D|(abstract)]] 
-       +
  
-PeterHammerstein 2005, Strategic analysis in evolutionary genetics and the theory of games. J. Genet., 84,  7-12 [[http://dx.doi.org/|(full text)]] +Peter Hammerstein2005, Strategic analysis in evolutionary genetics and the theory of games. J. Genet., 84,  7-12  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15876578%5Buid%5D|(abstract)]] 
-       +
  
-Didier, Gonze SamuelBernard Christian, Waltermann Achim, Kramer Hanspeter, Herzel 2005, Spontaneous synchronization of coupled circadian oscillators. Biophys. J., 89,  120-9 [[http://dx.doi.org/|(full text)]] +Didier Gonze, Samuel Bernard, Christian Waltermann, Achim Kramer, Hanspeter Herzel2005, Spontaneous synchronization of coupled circadian oscillators. Biophys. J., 89,  120-9  [[http://dx.doi.org/10.1529/biophysj.104.058388|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15849258%5Buid%5D|(abstract)]] 
-       +
  
-Malte, Kleinschmidt Olav, Grundmann NilsBlüthgen Hans-UlrichMösch Gerhard HBraus 2005, Transcriptional profiling of Saccharomyces cerevisiae cells under adhesion-inducing conditions. Mol. Genet. Genomics, 273,  382-93 [[http://dx.doi.org/|(full text)]] +Malte Kleinschmidt, Olav Grundmann, Nils BlüthgenHans-Ulrich MöschGerhard H Braus2005, Transcriptional profiling of Saccharomyces cerevisiae cells under adhesion-inducing conditions. Mol. Genet. Genomics, 273,  382-93  [[http://dx.doi.org/10.1007/s00438-005-1139-4|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15843968%5Buid%5D|(abstract)]] 
-       +
  
-Hermann, Wagner SandraBrill Richard, Kempter Catherine ECarr 2005, Microsecond precision of phase delay in the auditory system of the barn owl. J. Neurophysiol., 94,  1655-8 [[http://dx.doi.org/|(full text)]] +Hermann Wagner, Sandra Brill, Richard KempterCatherine E Carr2005, Microsecond precision of phase delay in the auditory system of the barn owl. J. Neurophysiol., 94,  1655-8  [[http://dx.doi.org/10.1152/jn.01226.2004|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15843477%5Buid%5D|(abstract)]] 
-       +
  
-IsaoTokuda Hanspeter, Herzel 2005, Detecting synchronizations in an asymmetric vocal fold model from time series data. Chaos, 15,  13702 [[http://dx.doi.org/|(full text)]] +Isao Tokuda, Hanspeter Herzel2005, Detecting synchronizations in an asymmetric vocal fold model from time series data. Chaos, 15,  13702  [[http://dx.doi.org/10.1063/1.1848232|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15836270%5Buid%5D|(abstract)]] 
-       +
  
-Florian, Geier SabineBecker-Weimann Achim, Kramer Hanspeter, Herzel 2005, Entrainment in a model of the mammalian circadian oscillator. J. Biol. Rhythms, 20,  83-93 [[http://dx.doi.org/|(full text)]] +Florian Geier, Sabine Becker-Weimann, Achim Kramer, Hanspeter Herzel2005, Entrainment in a model of the mammalian circadian oscillator. J. Biol. Rhythms, 20,  83-93  [[http://dx.doi.org/10.1177/0748730404269309|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15654073%5Buid%5D|(abstract)]] 
-       +
  
-Nils, Blüthgen Szymon MKiełbasa Hanspeter, Herzel 2005, Inferring combinatorial regulation of transcription in silico. Nucleic Acids Res., 33,  272-9 [[http://dx.doi.org/|(full text)]] +Nils Blüthgen, Szymon M Kiełbasa, Hanspeter Herzel2005, Inferring combinatorial regulation of transcription in silico. Nucleic Acids Res., 33,  272-9  [[http://dx.doi.org/10.1093/nar/gki167|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15647509%5Buid%5D|(abstract)]] 
-       +
  
-Matthias, Truss Maciej, Swat Szymon MKielbasa Reinhold, Schäfer Hanspeter, Herzel Christian, Hagemeier 2005, HuSiDa--the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells. Nucleic Acids Res., 33,  D108-11 [[http://dx.doi.org/|(full text)]] +Matthias Truss, Maciej Swat, Szymon M Kielbasa, Reinhold Schäfer, Hanspeter Herzel, Christian Hagemeier2005, HuSiDa--the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells. Nucleic Acids Res., 33,  D108-11  [[http://dx.doi.org/10.1093/nar/gki131|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15608157%5Buid%5D|(abstract)]] 
-       +
  
  
 +