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| ==== Publications ==== | ==== Publications ==== | ||
| - | === 2014 === | + | === 2014 === |
| - | | + | Astrid G Petzoldt, Yü-Hien Lee, Omid Khorramshahi, |
| - | Bharath Ananthasubramaniam, | + | Bharath Ananthasubramaniam, |
| - | + | ||
| - | Bertram Klinger, Nils Blüthgen, 2014, Consequences of feedback in signal transduction for targeted therapies. Biochem. Soc. Trans., 42, 770-5 [[http:// | + | Bertram Klinger, Nils Blüthgen, 2014, Consequences of feedback in signal transduction for targeted therapies. Biochem. Soc. Trans., 42, 770-5 [[http:// |
| - | + | ||
| - | Robert Lehmann, Rainer Machné, Hanspeter Herzel, 2014, The structural code of cyanobacterial genomes. Nucleic Acids Res., 42, 8873-83 [[http:// | + | Robert Lehmann, Rainer Machné, Hanspeter Herzel, 2014, The structural code of cyanobacterial genomes. Nucleic Acids Res., 42, 8873-83 |
| - | + | ||
| - | Anja Korenčič, Rok Košir, Grigory Bordyugov, Robert Lehmann, Damjana Rozman, Hanspeter Herzel, 2014, Timing of circadian genes in mammalian tissues. Sci Rep, 4, 5782 [[http:// | + | Anja Korenčič, Rok Košir, Grigory Bordyugov, Robert Lehmann, Damjana Rozman, Hanspeter Herzel, 2014, Timing of circadian genes in mammalian tissues. Sci Rep, 4, 5782 [[http:// |
| - | + | ||
| - | Eric Reifenstein, | + | Eric Reifenstein, |
| - | + | ||
| - | Christian Beck, Stefanie Hertel, Anne Rediger, Robert Lehmann, Anika Wiegard, Adrian Kölsch, Beate Heilmann, Jens Georg, Wolfgang R Hess, Ilka M Axmann, 2014, Daily Expression Pattern of Protein-Encoding Genes and Small Noncoding RNAs in Synechocystis sp. Strain PCC 6803. Appl. Environ. Microbiol., 80, 5195-206 [[http:// | + | Christian Beck, Stefanie Hertel, Anne Rediger, Robert Lehmann, Anika Wiegard, Adrian Kölsch, Beate Heilmann, Jens Georg, Wolfgang R Hess, Ilka M Axmann, 2014, Daily Expression Pattern of Protein-Encoding Genes and Small Noncoding RNAs in Synechocystis sp. Strain PCC 6803. Appl. Environ. Microbiol., 80, 5195-206 |
| - | + | ||
| - | Monica Killig, Birte Friedrichs, Johannes Meisig, Chiara Gentilini, Nils Blüthgen, Christoph Loddenkemper, | + | Monica Killig, Birte Friedrichs, Johannes Meisig, Chiara Gentilini, Nils Blüthgen, Christoph Loddenkemper, |
| - | + | ||
| - | Angela Relógio, Philippe Thomas, Paula Medina-Pérez, | + | Angela Relógio, Philippe Thomas, Paula Medina-Pérez, |
| - | + | ||
| - | Jorge Jaramillo, Robert Schmidt, Richard Kempter, 2014, Modeling inheritance of phase precession in the hippocampal formation. J. Neurosci., 34, 7715-31 [[http:// | + | Jorge Jaramillo, Robert Schmidt, Richard Kempter, 2014, Modeling inheritance of phase precession in the hippocampal formation. J. Neurosci., 34, 7715-31 |
| - | + | ||
| - | Frederic A Roemschied, Monika Jb Eberhard, Jan-Hendrik Schleimer, Bernhard Ronacher, Susanne Schreiber, 2014, Cell-intrinsic mechanisms of temperature compensation in a grasshopper sensory receptor neuron. Elife, 3, e02078 [[http://dx.doi.org/10.7554/eLife.02078|(full text)]] | + | Frederic A Roemschied, Monika Jb Eberhard, Jan-Hendrik Schleimer, Bernhard Ronacher, Susanne Schreiber, 2014, Cell-intrinsic mechanisms of temperature compensation in a grasshopper sensory receptor neuron. Elife, 3, e02078 |
| - | + | ||
| - | Arndt Telschow, Kirsten Hilgenboecker, Peter Hammerstein, John H Werren, 2014, Dobzhansky-muller and wolbachia-induced incompatibilities | + | Juliane Manitz, Thomas Kneib, Martin Schlather, Dirk Helbing, Dirk Brockmann, 2014, Origin Detection During Food-borne Disease Outbreaks |
| - | + | ||
| - | Bharath Ananthasubramaniam, Erik D Herzog, Hanspeter Herzel, 2014, Timing of neuropeptide coupling determines synchrony | + | Arndt Telschow, Kirsten Hilgenboecker, Peter Hammerstein, |
| - | + | ||
| - | Ana C L Guerreiro, Marco Benevento, Robert Lehmann, Bas van Breukelen, Harm Post, Piero Giansanti, A F Maarten Altelaar, Ilka M Axmann, Albert J R Heck, 2014, Daily Rhythms | + | Bharath Ananthasubramaniam, Erik D Herzog, Hanspeter Herzel, 2014, Timing of neuropeptide coupling determines synchrony and entrainment |
| - | + | ||
| - | Roman Zug, Peter Hammerstein, 2014, Bad guys turned nice? A critical assessment of Wolbachia mutualisms | + | Ana C L Guerreiro, Marco Benevento, Robert Lehmann, Bas van Breukelen, Harm Post, Piero Giansanti, A F Maarten Altelaar, Ilka M Axmann, Albert J R Heck, 2014, Daily Rhythms |
| - | + | ||
| - | Edda G Schulz, Johannes Meisig, Tomonori Nakamura, Ikuhiro Okamoto, Anja Sieber, Christel Picard, Maud Borensztein, | + | Roman Zug, Peter Hammerstein, 2014, Bad guys turned nice? A critical assessment of Wolbachia mutualisms |
| - | + | ||
| - | Joost Snijder, Rebecca J Burnley, Anika Wiegard, Adrien S J Melquiond, Alexandre M J J Bonvin, Ilka M Axmann, Albert | + | Philippe Lemey, Andrew Rambaut, Trevor Bedford, Nuno Faria, Filip Bielejec, Guy Baele, Colin A Russell, Derek J Smith, Oliver G Pybus, Dirk Brockmann, Marc A Suchard, 2014, Unifying viral genetics and human transportation data to predict the global transmission dynamics |
| - | + | ||
| - | Gijsbert D A Werner, Joan E Strassmann, Aniek B F Ivens, Daniel J P Engelmoer, Erik Verbruggen, David C Queller, Ronald Noë, Nancy Collins Johnson, Peter Hammerstein, E Toby Kiers, 2014, Evolution of microbial markets. Proc. Natl. Acad. Sci. U.S.A., 111, | + | Edda G Schulz, Johannes Meisig, Tomonori Nakamura, Ikuhiro Okamoto, Anja Sieber, Christel Picard, Maud Borensztein, Mitinori Saitou, Nils Blüthgen, Edith Heard, 2014, The two active X chromosomes in female ESCs block exit from the pluripotent state by modulating the ESC signaling network. Cell Stem Cell, 14, |
| - | + | ||
| - | Willi Gottstein, Stefan Müller, Hanspeter Herzel, Ralf Steuer, 2014, Elucidating the adaptation and temporal coordination | + | Joost Snijder, Rebecca J Burnley, Anika Wiegard, Adrien S J Melquiond, Alexandre M J J Bonvin, Ilka M Axmann, Albert J R Heck, 2014, Insight into cyanobacterial circadian timing from structural details |
| - | + | ||
| - | Ilka M Axmann, Stefanie Hertel, Anika Wiegard, Anja K Dörrich, Annegret Wilde, 2014, Diversity | + | Gijsbert D A Werner, Joan E Strassmann, Aniek B F Ivens, Daniel J P Engelmoer, Erik Verbruggen, David C Queller, Ronald Noë, Nancy Collins Johnson, Peter Hammerstein, |
| - | + | ||
| - | Stefan Müller, Georg Regensburger, | + | Willi Gottstein, Stefan Müller, Hanspeter Herzel, Ralf Steuer, 2014, Elucidating the adaptation and temporal coordination of metabolic pathways using in-silico evolution. BioSystems, 117, 68-76 [[http:// |
| - | + | ||
| + | Ilka M Axmann, Stefanie Hertel, Anika Wiegard, Anja K Dörrich, Annegret Wilde, 2014, Diversity of KaiC-based timing systems in marine Cyanobacteria. Mar Genomics, 14, 3-16 [[http:// | ||
| + | |||
| + | Stefan Müller, Georg Regensburger, | ||
| === 2013 === | === 2013 === | ||
| - | Stefan Müller, Georg Regensburger, | + | Dirk Brockmann, Dirk Helbing, 2013, The hidden geometry of complex, network-driven contagion phenomena. Science, 342, 1337-42 |
| - | | + | |
| + | Stefan Müller, Georg Regensburger, | ||
| + | |||
| + | Ekaterina Zhuchkova, Michiel W H Remme, Susanne Schreiber, 2013, Somatic versus dendritic resonance: differential filtering of inputs through non-uniform distributions of active conductances. PLoS ONE, 8, e78908 | ||
| + | |||
| + | Stefanie Hertel, Reimo Zoschke, Laura Neumann, Yujiao Qu, Ilka M Axmann, Christian Schmitz-Linneweber, | ||
| - | Ekaterina Zhuchkova, Michiel W H Remme, Susanne | + | Guido Hermey, Claudia Mahlke, Jakob J Gutzmann, Jörg Schreiber, Nils Blüthgen, Dietmar Kuhl, 2013, Genome-wide profiling |
| - | + | ||
| - | Stefanie Hertel, Reimo Zoschke, Laura Neumann, Yujiao Qu, Ilka M Axmann, Christian Schmitz-Linneweber, 2013, Multiple checkpoints for the expression of the chloroplast-encoded splicing factor MatK. Plant Physiol., 163, | + | Lloyd P Sanders, Bo Söderberg, Dirk Brockmann, Tobias Ambjörnsson, 2013, Perturbative solution to susceptible-infected-susceptible epidemics on networks. Phys Rev E Stat Nonlin Soft Matter Phys, 88, |
| - | + | ||
| - | Guido Hermey, Claudia Mahlke, Jakob J Gutzmann, Jörg Schreiber, Nils Blüthgen, Dietmar Kuhl, 2013, Genome-wide profiling of the activity-dependent hippocampal transcriptome. PLoS ONE, 8, | + | Olivia Woolley-Meza, Daniel Grady, Christian Thiemann, James P Bagrow, Dirk Brockmann, 2013, Eyjafjallajökull and 9/11: the impact of large-scale disasters on worldwide mobility. PLoS ONE, 8, |
| - | + | ||
| - | Henning Knoop, Marianne Gründel, Yvonne Zilliges, Robert Lehmann, Sabrina Hoffmann, Wolfgang Lockau, Ralf Steuer, 2013, Flux balance analysis of cyanobacterial metabolism: the metabolic network of Synechocystis sp. PCC 6803. PLoS Comput. Biol., 9, e1003081 [[http:// | + | Henning Knoop, Marianne Gründel, Yvonne Zilliges, Robert Lehmann, Sabrina Hoffmann, Wolfgang Lockau, Ralf Steuer, 2013, Flux balance analysis of cyanobacterial metabolism: the metabolic network of Synechocystis sp. PCC 6803. PLoS Comput. Biol., 9, e1003081 |
| - | + | ||
| - | Timor Glatzer, Monica Killig, Johannes Meisig, Isabelle Ommert, Merlin Luetke-Eversloh, | + | Timor Glatzer, Monica Killig, Johannes Meisig, Isabelle Ommert, Merlin Luetke-Eversloh, |
| - | + | ||
| - | Kajetan Bentele, Paul Saffert, Robert Rauscher, Zoya Ignatova, Nils Blüthgen, 2013, Efficient translation initiation dictates codon usage at gene start. Mol. Syst. Biol., 9, 675 [[http:// | + | Kajetan Bentele, Paul Saffert, Robert Rauscher, Zoya Ignatova, Nils Blüthgen, 2013, Efficient translation initiation dictates codon usage at gene start. Mol. Syst. Biol., 9, 675 [[http:// |
| - | + | ||
| - | Bertram Klinger, Anja Sieber, Raphaela Fritsche-Guenther, | + | Bertram Klinger, Anja Sieber, Raphaela Fritsche-Guenther, |
| - | + | ||
| - | Catherine Carr, Sahil Shah, Go Ashida, Thomas McColgan, Hermann Wagner, Paula T Kuokkanen, Richard Kempter, Christine Köppl, 2013, Maps of ITD in the nucleus laminaris of the barn owl. Adv. Exp. Med. Biol., 787, 215-22 [[http:// | + | Catherine Carr, Sahil Shah, Go Ashida, Thomas McColgan, Hermann Wagner, Paula T Kuokkanen, Richard Kempter, Christine Köppl, 2013, Maps of ITD in the nucleus laminaris of the barn owl. Adv. Exp. Med. Biol., 787, 215-22 |
| - | + | ||
| - | Christian T Herbst, Hanspeter Herzel, Jan G Svec, Megan T Wyman, W Tecumseh Fitch, 2013, Visualization of system dynamics using phasegrams. J R Soc Interface, 10, 20130288 [[http:// | + | Christian T Herbst, Hanspeter Herzel, Jan G Svec, Megan T Wyman, W Tecumseh Fitch, 2013, Visualization of system dynamics using phasegrams. J R Soc Interface, 10, 20130288 |
| - | + | ||
| - | Robert Lehmann, Rainer Machné, Jens Georg, Manuela Benary, Ilka Axmann, Ralf Steuer, 2013, How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis. BMC Bioinformatics, | + | Robert Lehmann, Rainer Machné, Jens Georg, Manuela Benary, Ilka Axmann, Ralf Steuer, 2013, How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis. BMC Bioinformatics, |
| - | + | ||
| - | Pål O Westermark, Hanspeter Herzel, 2013, Mechanism for 12 hr rhythm generation by the circadian clock. Cell Rep, 3, 1228-38 [[http:// | + | Pål O Westermark, Hanspeter Herzel, 2013, Mechanism for 12 hr rhythm generation by the circadian clock. Cell Rep, 3, 1228-38 |
| - | + | ||
| - | Paula T Kuokkanen, Go Ashida, Catherine E Carr, Hermann Wagner, Richard Kempter, 2013, Linear summation in the barn owl's brainstem underlies responses to interaural time differences. J. Neurophysiol., | + | Paula T Kuokkanen, Go Ashida, Catherine E Carr, Hermann Wagner, Richard Kempter, 2013, Linear summation in the barn owl's brainstem underlies responses to interaural time differences. J. Neurophysiol., |
| - | + | ||
| - | Adrián E Granada, Grigory Bordyugov, Achim Kramer, Hanspeter Herzel, 2013, Human chronotypes from a theoretical perspective. PLoS ONE, 8, e59464 [[http:// | + | Adrián E Granada, Grigory Bordyugov, Achim Kramer, Hanspeter Herzel, 2013, Human chronotypes from a theoretical perspective. PLoS ONE, 8, e59464 |
| - | + | ||
| - | Stefanie Hertel, Christian Brettschneider, | + | Stefanie Hertel, Christian Brettschneider, |
| - | + | ||
| - | Anika Wiegard, Anja K Dörrich, Hans-Tobias Deinzer, Christian Beck, Annegret Wilde, Julia Holtzendorff, | + | Anika Wiegard, Anja K Dörrich, Hans-Tobias Deinzer, Christian Beck, Annegret Wilde, Julia Holtzendorff, |
| - | + | ||
| - | Maria Pangalos, José R Donoso, Jochen Winterer, Aleksandar R Zivkovic, Richard Kempter, Nikolaus Maier, Dietmar Schmitz, 2013, Recruitment of oriens-lacunosum-moleculare interneurons during hippocampal ripples. Proc. Natl. Acad. Sci. U.S.A., 110, 4398-403 [[http:// | + | Maria Pangalos, José R Donoso, Jochen Winterer, Aleksandar R Zivkovic, Richard Kempter, Nikolaus Maier, Dietmar Schmitz, 2013, Recruitment of oriens-lacunosum-moleculare interneurons during hippocampal ripples. Proc. Natl. Acad. Sci. U.S.A., 110, 4398-403 |
| - | + | ||
| - | Benjamin Bossan, Peter Hammerstein, | + | Benjamin Bossan, Peter Hammerstein, |
| - | + | ||
| - | Nils Blüthgen, Stefan Legewie, 2013, Robustness of signal transduction pathways. Cell. Mol. Life Sci., 70, 2259-69 [[http:// | + | Nils Blüthgen, Stefan Legewie, 2013, Robustness of signal transduction pathways. Cell. Mol. Life Sci., 70, 2259-69 |
| - | + | ||
| === 2012 === | === 2012 === | ||
| - | Franziska Witzel, Louise Maddison, Nils Blüthgen, 2012, How scaffolds shape MAPK signaling: what we know and opportunities for systems approaches. Front Physiol, 3, 475 [[http:// | + | Franziska Witzel, Louise Maddison, Nils Blüthgen, 2012, How scaffolds shape MAPK signaling: what we know and opportunities for systems approaches. Front Physiol, 3, 475 [[http:// |
| - | + | ||
| - | Anja Korenčič, Grigory Bordyugov, Rok Košir, Damjana Rozman, Marko Goličnik, Hanspeter Herzel, 2012, The interplay of cis-regulatory elements rules circadian rhythms in mouse liver. PLoS ONE, 7, e46835 [[http:// | + | Anja Korenčič, Grigory Bordyugov, Rok Košir, Damjana Rozman, Marko Goličnik, Hanspeter Herzel, 2012, The interplay of cis-regulatory elements rules circadian rhythms in mouse liver. PLoS ONE, 7, e46835 |
| - | + | ||
| - | Nils Blüthgen, Stefan Legewie, 2013, Robustness of signal transduction pathways. Cell. Mol. Life Sci., 70, 2259-69 [[http:// | + | Nils Blüthgen, Stefan Legewie, 2013, Robustness of signal transduction pathways. Cell. Mol. Life Sci., 70, 2259-69 |
| - | + | ||
| - | Dmitry Zarubin, Ekaterina Zhuchkova, Susanne Schreiber, 2012, Effects of cooperative ion-channel interactions on the dynamics of excitable membranes. Phys Rev E Stat Nonlin Soft Matter Phys, 85, 061904 [[http://dx.doi.org/|(full text)]] | + | Dmitry Zarubin, Ekaterina Zhuchkova, Susanne Schreiber, 2012, Effects of cooperative ion-channel interactions on the dynamics of excitable membranes. Phys Rev E Stat Nonlin Soft Matter Phys, 85, 061904 |
| - | + | ||
| - | Hanna Bendfeldt, Manuela Benary, Tobias Scheel, Kerstin Steinbrink, Andreas Radbruch, Hanspeter Herzel, Ria Baumgrass, 2012, IL-2 Expression in Activated Human Memory FOXP3(+) Cells Critically Depends on the Cellular Levels of FOXP3 as Well as of Four Transcription Factors of T Cell Activation. Front Immunol, 3, 264 [[http:// | + | Hanna Bendfeldt, Manuela Benary, Tobias Scheel, Kerstin Steinbrink, Andreas Radbruch, Hanspeter Herzel, Ria Baumgrass, 2012, IL-2 Expression in Activated Human Memory FOXP3(+) Cells Critically Depends on the Cellular Levels of FOXP3 as Well as of Four Transcription Factors of T Cell Activation. Front Immunol, 3, 264 [[http:// |
| - | + | ||
| - | Jari Kämäräinen, | + | Jari Kämäräinen, |
| - | + | ||
| - | Go Ashida, Kazuo Funabiki, Paula T Kuokkanen, Richard Kempter, Catherine E Carr, 2012, Signal-to-noise ratio in the membrane potential of the owl's auditory coincidence detectors. J. Neurophysiol., | + | Go Ashida, Kazuo Funabiki, Paula T Kuokkanen, Richard Kempter, Catherine E Carr, 2012, Signal-to-noise ratio in the membrane potential of the owl's auditory coincidence detectors. J. Neurophysiol., |
| - | + | ||
| - | Jörn Matthias Schmiedel, Ilka Maria Axmann, Stefan Legewie, 2012, Multi-target regulation by small RNAs synchronizes gene expression thresholds and may enhance ultrasensitive behavior. PLoS ONE, 7, e42296 [[http:// | + | Jörn Matthias Schmiedel, Ilka Maria Axmann, Stefan Legewie, 2012, Multi-target regulation by small RNAs synchronizes gene expression thresholds and may enhance ultrasensitive behavior. PLoS ONE, 7, e42296 |
| - | + | ||
| - | Michael Fähling, Anja Bondke Persson, Bertram Klinger, Edgar Benko, Andreas Steege, Mumtaz Kasim, Andreas Patzak, Pontus B Persson, Gunter Wolf, Nils Blüthgen, Ralf Mrowka, 2012, Multilevel regulation of HIF-1 signaling by TTP. Mol. Biol. Cell, 23, 4129-41 [[http:// | + | Michael Fähling, Anja Bondke Persson, Bertram Klinger, Edgar Benko, Andreas Steege, Mumtaz Kasim, Andreas Patzak, Pontus B Persson, Gunter Wolf, Nils Blüthgen, Ralf Mrowka, 2012, Multilevel regulation of HIF-1 signaling by TTP. Mol. Biol. Cell, 23, 4129-41 |
| - | + | ||
| - | Iwona Stelniec-Klotz, | + | Iwona Stelniec-Klotz, |
| - | + | ||
| - | Anne Rediger, René Geissen, Benedikt Steuten, Beate Heilmann, Rolf Wagner, Ilka M Axmann, 2012, 6S RNA - an old issue became blue-green. Microbiology (Reading, Engl.), 158, 2480-91 [[http:// | + | Anne Rediger, René Geissen, Benedikt Steuten, Beate Heilmann, Rolf Wagner, Ilka M Axmann, 2012, 6S RNA - an old issue became blue-green. Microbiology (Reading, Engl.), 158, 2480-91 |
| - | + | ||
| - | Roman Zug, Peter Hammerstein, | + | Roman Zug, Peter Hammerstein, |
| - | + | ||
| - | Roland Schaette, Richard Kempter, 2012, Computational models of neurophysiological correlates | + | Daniel Grady, Christian Thiemann, Dirk Brockmann, 2012, Robust classification |
| - | + | ||
| - | Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat, Joost Gribnau, Emmanuel Barillot, Nils Blüthgen, Job Dekker, Edith Heard, 2012, Spatial partitioning | + | Roland Schaette, Richard Kempter, 2012, Computational models |
| - | + | ||
| - | Richard Kempter, Christian Leibold, György Buzsáki, Kamran Diba, Robert Schmidt, 2012, Quantifying circular-linear associations: | + | Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat, Joost Gribnau, Emmanuel Barillot, Nils Blüthgen, Job Dekker, Edith Heard, 2012, Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature, 485, |
| - | + | ||
| - | Eric T Reifenstein, | + | Richard Kempter, |
| - | + | ||
| - | Hanna Bendfeldt, Manuela Benary, Tobias Scheel, Stefan Frischbutter, | + | Dirk Brockmann, 2012, Complex systems: Spotlight on mobility. Nature, 484, |
| - | + | ||
| - | Ralf Steuer, Henning Knoop, Rainer Machné, 2012, Modelling cyanobacteria: | + | Eric T Reifenstein, Richard Kempter, Susanne Schreiber, Martin B Stemmler, Andreas V M Herz, 2012, Grid cells in rat entorhinal cortex encode physical space with independent firing fields and phase precession at the single-trial level. Proc. Natl. Acad. Sci. U.S.A., 109, |
| - | + | ||
| - | Christian Beck, Henning Knoop, Ilka M Axmann, Ralf Steuer, 2012, The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms. BMC Genomics, 13, | + | Hanna Bendfeldt, Manuela Benary, Tobias Scheel, Stefan Frischbutter, |
| - | + | ||
| - | Mariano A Belluscio, Kenji Mizuseki, Robert Schmidt, Richard Kempter, György Buzsáki, 2012, Cross-frequency phase-phase coupling between θ and γ oscillations in the hippocampus. J. Neurosci., 32, 423-35 [[http:// | + | Ralf Steuer, Henning Knoop, Rainer Machné, 2012, Modelling cyanobacteria: |
| - | + | ||
| + | Christian Beck, Henning Knoop, Ilka M Axmann, Ralf Steuer, 2012, The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms. BMC Genomics, 13, 56 [[http:// | ||
| + | |||
| + | Mariano A Belluscio, Kenji Mizuseki, Robert Schmidt, Richard Kempter, György Buzsáki, 2012, Cross-frequency phase-phase coupling between θ and γ oscillations in the hippocampus. J. Neurosci., 32, 423-35 | ||
| === 2011 === | === 2011 === | ||
| - | Adrián E Granada, Trinitat Cambras, Antoni Díez-Noguera, | + | Adrián E Granada, Trinitat Cambras, Antoni Díez-Noguera, |
| - | + | ||
| - | Ralf Steuer, Steffen Waldherr, Victor Sourjik, Markus Kollmann, 2011, Robust signal processing in living cells. PLoS Comput. Biol., 7, e1002218 [[http:// | + | Ralf Steuer, Steffen Waldherr, Victor Sourjik, Markus Kollmann, 2011, Robust signal processing in living cells. PLoS Comput. Biol., 7, e1002218 |
| - | + | ||
| - | Angela Relógio, Pal O Westermark, Thomas Wallach, Katja Schellenberg, | + | Angela Relógio, Pal O Westermark, Thomas Wallach, Katja Schellenberg, |
| - | + | ||
| - | Nikolaus Maier, Alvaro Tejero-Cantero, | + | Nikolaus Maier, Alvaro Tejero-Cantero, |
| - | + | ||
| - | Pascal Schulthess, Nils Blüthgen, 2011, From reaction networks to information flow--using modular response analysis to track information in signaling networks. Meth. Enzymol., 500, 397-409 [[http:// | + | Pascal Schulthess, Nils Blüthgen, 2011, From reaction networks to information flow--using modular response analysis to track information in signaling networks. Meth. Enzymol., 500, 397-409 |
| - | + | ||
| - | Jan Clemens, Olaf Kutzki, Bernhard Ronacher, Susanne Schreiber, Sandra Wohlgemuth, 2011, Efficient transformation of an auditory population code in a small sensory system. Proc. Natl. Acad. Sci. U.S.A., 108, 13812-7 [[http:// | + | Jan Clemens, Olaf Kutzki, Bernhard Ronacher, Susanne Schreiber, Sandra Wohlgemuth, 2011, Efficient transformation of an auditory population code in a small sensory system. Proc. Natl. Acad. Sci. U.S.A., 108, 13812-7 |
| - | + | ||
| - | K Laurence Jost, Sebastian Haase, Daniel Smeets, Nadine Schrode, Jörn M Schmiedel, Bianca Bertulat, Hanspeter Herzel, Marion Cremer, M Cristina Cardoso, 2011, 3D-Image analysis platform monitoring relocation of pluripotency genes during reprogramming. Nucleic Acids Res., 39, e113 [[http:// | + | K Laurence Jost, Sebastian Haase, Daniel Smeets, Nadine Schrode, Jörn M Schmiedel, Bianca Bertulat, Hanspeter Herzel, Marion Cremer, M Cristina Cardoso, 2011, 3D-Image analysis platform monitoring relocation of pluripotency genes during reprogramming. Nucleic Acids Res., 39, e113 [[http:// |
| - | + | ||
| - | Anuradha Chauhan, Stephan Lorenzen, Hanspeter Herzel, Samuel Bernard, 2011, Regulation of mammalian cell cycle progression in the regenerating liver. J. Theor. Biol., 283, 103-12 [[http:// | + | Anuradha Chauhan, Stephan Lorenzen, Hanspeter Herzel, Samuel Bernard, 2011, Regulation of mammalian cell cycle progression in the regenerating liver. J. Theor. Biol., 283, 103-12 |
| - | + | ||
| - | Raphaela Fritsche-Guenther, | + | Raphaela Fritsche-Guenther, |
| - | + | ||
| - | Benjamin Bossan, Arnulf Koehncke, Peter Hammerstein, | + | Benjamin Bossan, Arnulf Koehncke, Peter Hammerstein, |
| - | + | ||
| - | Christian Klotz, Thomas Ziegler, Ana Sofia Figueiredo, Sebastian Rausch, Matthew R Hepworth, Nadja Obsivac, Christine Sers, Roland Lang, Peter Hammerstein, | + | Christian Klotz, Thomas Ziegler, Ana Sofia Figueiredo, Sebastian Rausch, Matthew R Hepworth, Nadja Obsivac, Christine Sers, Roland Lang, Peter Hammerstein, |
| - | + | ||
| - | Marc Päpper, Richard Kempter, Christian Leibold, 2011, Synaptic tagging, evaluation of memories, and the distal reward problem. Learn. Mem., 18, 58-70 [[http:// | + | Marc Päpper, Richard Kempter, Christian Leibold, 2011, Synaptic tagging, evaluation of memories, and the distal reward problem. Learn. Mem., 18, 58-70 [[http:// |
| - | + | ||
| - | Ettore Murabito, Kieran Smallbone, Jonathan Swinton, Hans V Westerhoff, Ralf Steuer, 2011, A probabilistic approach to identify putative drug targets in biochemical networks. J R Soc Interface, 8, 880-95 [[http:// | + | Ettore Murabito, Kieran Smallbone, Jonathan Swinton, Hans V Westerhoff, Ralf Steuer, 2011, A probabilistic approach to identify putative drug targets in biochemical networks. J R Soc Interface, 8, 880-95 |
| - | + | ||
| === 2010 === | === 2010 === | ||
| - | Adrián E Granada, Trinitat Cambras, Antoni Díez-Noguera, | + | Adrián E Granada, Trinitat Cambras, Antoni Díez-Noguera, |
| - | + | ||
| - | Marc Päpper, Richard Kempter, Christian Leibold, 2011, Synaptic tagging, evaluation of memories, and the distal reward problem. Learn. Mem., 18, 58-70 [[http:// | + | Marc Päpper, Richard Kempter, Christian Leibold, 2011, Synaptic tagging, evaluation of memories, and the distal reward problem. Learn. Mem., 18, 58-70 [[http:// |
| - | + | ||
| - | Karsten Jürchott, Ralf-Jürgen Kuban, Till Krech, Nils Blüthgen, Ulrike Stein, Wolfgang Walther, Christian Friese, Szymon M Kiełbasa, Ute Ungethüm, Per Lund, Thomas Knösel, Wolfgang Kemmner, Markus Morkel, Johannes Fritzmann, Peter M Schlag, Walter Birchmeier, Tammo Krueger, Silke Sperling, Christine Sers, Hans-Dieter Royer, Hanspeter Herzel, Reinhold Schäfer, 2010, Identification of Y-box binding protein 1 as a core regulator of MEK/ERK pathway-dependent gene signatures in colorectal cancer cells. PLoS Genet., 6, e1001231 [[http:// | + | Karsten Jürchott, Ralf-Jürgen Kuban, Till Krech, Nils Blüthgen, Ulrike Stein, Wolfgang Walther, Christian Friese, Szymon M Kiełbasa, Ute Ungethüm, Per Lund, Thomas Knösel, Wolfgang Kemmner, Markus Morkel, Johannes Fritzmann, Peter M Schlag, Walter Birchmeier, Tammo Krueger, Silke Sperling, Christine Sers, Hans-Dieter Royer, Hanspeter Herzel, Reinhold Schäfer, 2010, Identification of Y-box binding protein 1 as a core regulator of MEK/ERK pathway-dependent gene signatures in colorectal cancer cells. PLoS Genet., 6, e1001231 |
| - | + | ||
| - | Ettore Murabito, Kieran Smallbone, Jonathan Swinton, Hans V Westerhoff, Ralf Steuer, 2011, A probabilistic approach to identify putative drug targets | + | Christian Thiemann, Fabian Theis, Daniel Grady, Rafael Brune, Dirk Brockmann, 2010, The structure of borders |
| - | + | ||
| - | Ute Abraham, Adrián E Granada, Pål O Westermark, Markus Heine, Achim Kramer, Hanspeter Herzel, 2010, Coupling governs entrainment range of circadian clocks. Mol. Syst. Biol., 6, | + | Ettore Murabito, Kieran Smallbone, Jonathan Swinton, Hans V Westerhoff, Ralf Steuer, 2011, A probabilistic approach to identify putative drug targets in biochemical networks. J R Soc Interface, 8, |
| - | + | ||
| - | Paula T Kuokkanen, Hermann Wagner, Go Ashida, Catherine E Carr, Richard Kempter, 2010, On the origin | + | Ute Abraham, Adrián E Granada, Pål O Westermark, Markus Heine, Achim Kramer, Hanspeter Herzel, 2010, Coupling governs entrainment range of circadian clocks. Mol. Syst. Biol., 6, |
| - | + | ||
| - | Olof Leimar, Peter Hammerstein, 2010, Cooperation for direct fitness benefits. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 365, | + | Paula T Kuokkanen, Hermann Wagner, Go Ashida, Catherine E Carr, Richard Kempter, 2010, On the origin of the extracellular field potential in the nucleus laminaris of the barn owl (Tyto alba). J. Neurophysiol., 104, |
| - | + | ||
| - | Christian Brettschneider, Rebecca J Rose, Stefanie Hertel, Ilka M Axmann, Albert J R Heck, Markus Kollmann, 2010, A sequestration feedback determines dynamics and temperature entrainment of the KaiABC circadian clock. Mol. Syst. Biol., | + | Olof Leimar, Peter Hammerstein, 2010, Cooperation for direct fitness benefits. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 365, |
| - | + | ||
| - | Roland Schaette, Ovidiu König, Dirk Hornig, Manfred Gross, Richard Kempter, 2010, Acoustic stimulation treatments against tinnitus could be most effective when tinnitus pitch is within | + | Christian Brettschneider, Rebecca J Rose, Stefanie Hertel, Ilka M Axmann, Albert J R Heck, Markus Kollmann, 2010, A sequestration feedback determines dynamics and temperature entrainment of the KaiABC circadian clock. Mol. Syst. Biol., 6, |
| - | + | ||
| - | Henning Knoop, Yvonne Zilliges, Wolfgang Lockau, Ralf Steuer, 2010, The metabolic network of Synechocystis sp. PCC 6803: systemic properties of autotrophic growth. Plant Physiol., 154, | + | Roland Schaette, Ovidiu König, Dirk Hornig, Manfred Gross, Richard Kempter, 2010, Acoustic stimulation treatments against tinnitus could be most effective when tinnitus pitch is within the stimulated frequency range. Hear. Res., 269, |
| - | + | ||
| - | Szymon M Kiełbasa, Holger Klein, Helge G Roider, Martin Vingron, Nils Blüthgen, 2010, TransFind--predicting transcriptional regulators for gene sets. Nucleic Acids Res., 38, | + | Henning Knoop, Yvonne Zilliges, Wolfgang Lockau, Ralf Steuer, 2010, The metabolic network of Synechocystis sp. PCC 6803: systemic properties of autotrophic growth. Plant Physiol., 154, |
| - | + | ||
| - | Jignesh R Parikh, Bertram Klinger, Yu Xia, Jarrod A Marto, Nils Blüthgen, 2010, Discovering causal signaling pathways through gene-expression patterns. Nucleic Acids Res., 38, | + | Szymon M Kiełbasa, Holger Klein, Helge G Roider, Martin Vingron, Nils Blüthgen, 2010, TransFind--predicting transcriptional regulators for gene sets. Nucleic Acids Res., 38, |
| - | + | ||
| - | Szymon M Kiełbasa, Nils Blüthgen, Michael Fähling, Ralf Mrowka, 2010, Targetfinder.org: | + | Jignesh R Parikh, Bertram Klinger, Yu Xia, Jarrod A Marto, Nils Blüthgen, 2010, Discovering causal signaling pathways through gene-expression patterns. Nucleic Acids Res., 38, |
| - | + | ||
| - | Nils Blüthgen, 2010, Transcriptional feedbacks in mammalian signal transduction pathways facilitate rapid and reliable protein induction. Mol Biosyst, 6, | + | Szymon M Kiełbasa, |
| - | + | ||
| - | Samuel Bernard, Branka Cajavec Bernard, Francis Lévi, Hanspeter Herzel, 2010, Tumor growth rate determines the timing of optimal chronomodulated treatment schedules. PLoS Comput. Biol., 6, | + | Nils Blüthgen, 2010, Transcriptional feedbacks in mammalian signal transduction pathways facilitate rapid and reliable protein induction. Mol Biosyst, 6, |
| - | + | ||
| - | Isao T Tokuda, Marco Zemke, Malte Kob, Hanspeter Herzel, 2010, Biomechanical modeling of register transitions and the role of vocal tract resonators. J. Acoust. Soc. Am., 127, | + | Samuel Bernard, Branka Cajavec Bernard, Francis Lévi, Hanspeter Herzel, 2010, Tumor growth rate determines |
| - | + | ||
| - | Yue-Hien Lee, Manuela Benary, Ria Baumgrass, Hanspeter Herzel, 2010, Prediction | + | Isao T Tokuda, Marco Zemke, Malte Kob, Hanspeter Herzel, 2010, Biomechanical modeling |
| - | + | ||
| - | Olaf Wolkenhauer, Charles Auffray, Simone Baltrusch, Nils Blüthgen, Helen Byrne, Marta Cascante, Andrea Ciliberto, Trevor Dale, Dirk Drasdo, David Fell, James E Ferrell, Daniel Gallahan, Robert Gatenby, Ulrich Günther, Brian D Harms, Hanspeter Herzel, Christian Junghanss, Manfred Kunz, Ingeborg van Leeuwen, Philippe Lenormand, Francis Levi, Michael Linnebacher, | + | Yue-Hien Lee, Manuela Benary, Ria Baumgrass, Hanspeter Herzel, 2010, Prediction |
| - | + | ||
| - | Erik Arner, Pål O Westermark, Kirsty L Spalding, Tom Britton, Mikael Rydén, Jonas Frisén, Samuel Bernard, Peter Arner, 2010, Adipocyte turnover: relevance to human adipose tissue morphology. Diabetes, 59, 105-9 [[http:// | + | Olaf Wolkenhauer, |
| - | + | ||
| + | Erik Arner, Pål O Westermark, Kirsty L Spalding, Tom Britton, Mikael Rydén, Jonas Frisén, Samuel Bernard, Peter Arner, 2010, Adipocyte turnover: relevance to human adipose tissue morphology. Diabetes, 59, 105-9 [[http:// | ||
| === 2009 === | === 2009 === | ||
| - | Olaf Wolkenhauer, | + | Olaf Wolkenhauer, |
| - | + | ||
| - | Pål O Westermark, David K Welsh, Hitoshi Okamura, Hanspeter Herzel, 2009, Quantification of circadian rhythms in single cells. PLoS Comput. Biol., 5, e1000580 [[http:// | + | Pål O Westermark, David K Welsh, Hitoshi Okamura, Hanspeter Herzel, 2009, Quantification of circadian rhythms in single cells. PLoS Comput. Biol., 5, e1000580 |
| - | + | ||
| - | Erik Arner, Pål O Westermark, Kirsty L Spalding, Tom Britton, Mikael Rydén, Jonas Frisén, Samuel Bernard, Peter Arner, 2010, Adipocyte turnover: relevance to human adipose tissue morphology. Diabetes, 59, 105-9 [[http:// | + | Erik Arner, Pål O Westermark, Kirsty L Spalding, Tom Britton, Mikael Rydén, Jonas Frisén, Samuel Bernard, Peter Arner, 2010, Adipocyte turnover: relevance to human adipose tissue morphology. Diabetes, 59, 105-9 [[http:// |
| - | + | ||
| - | Robert Schmidt, Kamran Diba, Christian Leibold, Dietmar Schmitz, György Buzsáki, Richard Kempter, 2009, Single-trial phase precession in the hippocampus. J. Neurosci., 29, 13232-41 [[http:// | + | Robert Schmidt, Kamran Diba, Christian Leibold, Dietmar Schmitz, György Buzsáki, Richard Kempter, 2009, Single-trial phase precession in the hippocampus. J. Neurosci., 29, 13232-41 |
| - | + | ||
| - | Adrián E Granada, Hanspeter Herzel, 2009, How to achieve fast entrainment? | + | Adrián E Granada, Hanspeter Herzel, 2009, How to achieve fast entrainment? |
| - | + | ||
| - | Frank J Bruggeman, Nils Blüthgen, Hans V Westerhoff, 2009, Noise management by molecular networks. PLoS Comput. Biol., 5, e1000506 [[http:// | + | Frank J Bruggeman, Nils Blüthgen, Hans V Westerhoff, 2009, Noise management by molecular networks. PLoS Comput. Biol., 5, e1000506 |
| - | + | ||
| - | Hermann Wagner, Sandra Brill, Richard Kempter, Catherine E Carr, 2009, Auditory responses in the barn owl's nucleus laminaris to clicks: impulse response and signal analysis of neurophonic potential. J. Neurophysiol., | + | Hermann Wagner, Sandra Brill, Richard Kempter, Catherine E Carr, 2009, Auditory responses in the barn owl's nucleus laminaris to clicks: impulse response and signal analysis of neurophonic potential. J. Neurophysiol., |
| - | + | ||
| - | Judith Dannowski, Matthias Flor, Arndt Telschow, Peter Hammerstein, | + | Judith Dannowski, Matthias Flor, Arndt Telschow, Peter Hammerstein, |
| - | + | ||
| - | Ilka M Axmann, Ulf Dühring, Luiza Seeliger, Anne Arnold, Jens T Vanselow, Achim Kramer, Annegret Wilde, 2009, Biochemical evidence for a timing mechanism in prochlorococcus. J. Bacteriol., 191, 5342-7 [[http:// | + | Ilka M Axmann, Ulf Dühring, Luiza Seeliger, Anne Arnold, Jens T Vanselow, Achim Kramer, Annegret Wilde, 2009, Biochemical evidence for a timing mechanism in prochlorococcus. J. Bacteriol., 191, 5342-7 |
| - | + | ||
| - | Ana Sofia Figueiredo, Thomas Höfer, Christian Klotz, Christine Sers, Susanne Hartmann, Richard Lucius, Peter Hammerstein, | + | Ana Sofia Figueiredo, Thomas Höfer, Christian Klotz, Christine Sers, Susanne Hartmann, Richard Lucius, Peter Hammerstein, |
| - | + | ||
| - | Roland Schaette, Richard Kempter, 2009, Predicting tinnitus pitch from patients' | + | Roland Schaette, Richard Kempter, 2009, Predicting tinnitus pitch from patients' |
| - | + | ||
| - | Katarzyna Bozek, Angela Relógio, Szymon M Kielbasa, Markus Heine, Christof Dame, Achim Kramer, Hanspeter Herzel, 2009, Regulation of clock-controlled genes in mammals. PLoS ONE, 4, e4882 [[http:// | + | Katarzyna Bozek, Angela Relógio, Szymon M Kielbasa, Markus Heine, Christof Dame, Achim Kramer, Hanspeter Herzel, 2009, Regulation of clock-controlled genes in mammals. PLoS ONE, 4, e4882 [[http:// |
| - | + | ||
| - | Arnulf Koehncke, Arndt Telschow, John H Werren, Peter Hammerstein, | + | Arnulf Koehncke, Arndt Telschow, John H Werren, Peter Hammerstein, |
| - | + | ||
| - | Susanne Schreiber, Inés Samengo, Andreas V M Herz, 2009, Two distinct mechanisms shape the reliability of neural responses. J. Neurophysiol., | + | Susanne Schreiber, Inés Samengo, Andreas V M Herz, 2009, Two distinct mechanisms shape the reliability of neural responses. J. Neurophysiol., |
| - | + | ||
| - | Nils Blüthgen, Stefan Legewie, Szymon M Kielbasa, Anja Schramme, Oleg Tchernitsa, Jana Keil, Andrea Solf, Martin Vingron, Reinhold Schäfer, Hanspeter Herzel, Christine Sers, 2009, A systems biological approach suggests that transcriptional feedback regulation by dual-specificity phosphatase 6 shapes extracellular signal-related kinase activity in RAS-transformed fibroblasts. FEBS J., 276, 1024-35 [[http:// | + | Nils Blüthgen, Stefan Legewie, Szymon M Kielbasa, Anja Schramme, Oleg Tchernitsa, Jana Keil, Andrea Solf, Martin Vingron, Reinhold Schäfer, Hanspeter Herzel, Christine Sers, 2009, A systems biological approach suggests that transcriptional feedback regulation by dual-specificity phosphatase 6 shapes extracellular signal-related kinase activity in RAS-transformed fibroblasts. FEBS J., 276, 1024-35 |
| - | + | ||
| - | Sonja-Verena Albers, Nils-Kåre Birkeland, Arnold J M Driessen, Susanne Gertig, Patrick Haferkamp, Hans-Peter Klenk, Theresa Kouril, Andrea Manica, Trong K Pham, Peter Ruoff, Christa Schleper, Dietmar Schomburg, Kieran J Sharkey, Bettina Siebers, Pawel Sierocinski, | + | Sonja-Verena Albers, Nils-Kåre Birkeland, Arnold J M Driessen, Susanne Gertig, Patrick Haferkamp, Hans-Peter Klenk, Theresa Kouril, Andrea Manica, Trong K Pham, Peter Ruoff, Christa Schleper, Dietmar Schomburg, Kieran J Sharkey, Bettina Siebers, Pawel Sierocinski, |
| - | + | ||
| - | Stefan Legewie, Christine Sers, Hanspeter Herzel, 2009, Kinetic mechanisms for overexpression insensitivity and oncogene cooperation. FEBS Lett., 583, 93-6 [[http:// | + | Stefan Legewie, Christine Sers, Hanspeter Herzel, 2009, Kinetic mechanisms for overexpression insensitivity and oncogene cooperation. FEBS Lett., 583, 93-6 [[http:// |
| - | + | ||
| === 2008 === | === 2008 === | ||
| - | Stefan Legewie, Christine Sers, Hanspeter Herzel, 2009, Kinetic mechanisms for overexpression insensitivity and oncogene cooperation. FEBS Lett., 583, 93-6 [[http:// | + | Stefan Legewie, Christine Sers, Hanspeter Herzel, 2009, Kinetic mechanisms for overexpression insensitivity and oncogene cooperation. FEBS Lett., 583, 93-6 [[http:// |
| - | + | ||
| - | Markus J Herrgård, Neil Swainston, Paul Dobson, Warwick B Dunn, K Yalçin Arga, Mikko Arvas, Nils Blüthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novère, Peter Li, Wolfram Liebermeister, | + | Markus J Herrgård, Neil Swainston, Paul Dobson, Warwick B Dunn, K Yalçin Arga, Mikko Arvas, Nils Blüthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novère, Peter Li, Wolfram Liebermeister, |
| - | + | ||
| - | Nils Blüthgen, Stefan Legewie, 2008, Systems analysis of MAPK signal transduction. Essays Biochem., 45, 95-107 [[http:// | + | Nils Blüthgen, Stefan Legewie, 2008, Systems analysis of MAPK signal transduction. Essays Biochem., 45, 95-107 |
| - | + | ||
| - | Annamaria Bevilacqua, Stephen J Wilkinson, Richard Dimelow, Ettore Murabito, Samrina Rehman, Maria Nardelli, Karen van Eunen, Sergio Rossell, Frank J Bruggeman, Nils Blüthgen, Dirk De Vos, Jildau Bouwman, Barbara M Bakker, Hans V Westerhoff, 2008, Vertical systems biology: from DNA to flux and back. SEB Exp Biol Ser, 61, 65-91 [[http://dx.doi.org/|(full text)]] | + | Annamaria Bevilacqua, Stephen J Wilkinson, Richard Dimelow, Ettore Murabito, Samrina Rehman, Maria Nardelli, Karen van Eunen, Sergio Rossell, Frank J Bruggeman, Nils Blüthgen, Dirk De Vos, Jildau Bouwman, Barbara M Bakker, Hans V Westerhoff, 2008, Vertical systems biology: from DNA to flux and back. SEB Exp Biol Ser, 61, 65-91 [[http://www.ncbi.nlm.nih.gov/ |
| - | + | ||
| - | Hanspeter Herzel, Nils Blüthgen, 2008, Mathematical models in mammalian cell biology. Genome Biol., 9, 316 [[http:// | + | Hanspeter Herzel, Nils Blüthgen, 2008, Mathematical models in mammalian cell biology. Genome Biol., 9, 316 [[http:// |
| - | + | ||
| - | Stefan Legewie, Dennis Dienst, Annegret Wilde, Hanspeter Herzel, Ilka M Axmann, 2008, Small RNAs establish delays and temporal thresholds in gene expression. Biophys. J., 95, 3232-8 [[http:// | + | Stefan Legewie, Dennis Dienst, Annegret Wilde, Hanspeter Herzel, Ilka M Axmann, 2008, Small RNAs establish delays and temporal thresholds in gene expression. Biophys. J., 95, 3232-8 |
| - | + | ||
| - | Yutaka Kobayashi, Peter Hammerstein, | + | Yutaka Kobayashi, Peter Hammerstein, |
| - | + | ||
| - | Ralf Mrowka, Nils Blüthgen, Michael Fähling, 2008, Seed-based systematic discovery of specific transcription factor target genes. FEBS J., 275, 3178-92 [[http:// | + | Ralf Mrowka, Nils Blüthgen, Michael Fähling, 2008, Seed-based systematic discovery of specific transcription factor target genes. FEBS J., 275, 3178-92 |
| - | + | ||
| - | Stefan Legewie, Hanspeter Herzel, Hans V Westerhoff, Nils Blüthgen, 2008, Recurrent design patterns in the feedback regulation of the mammalian signalling network. Mol. Syst. Biol., 4, 190 [[http:// | + | Stefan Legewie, Hanspeter Herzel, Hans V Westerhoff, Nils Blüthgen, 2008, Recurrent design patterns in the feedback regulation of the mammalian signalling network. Mol. Syst. Biol., 4, 190 [[http:// |
| - | + | ||
| - | Kirsty L Spalding, Erik Arner, Pål O Westermark, Samuel Bernard, Bruce A Buchholz, Olaf Bergmann, Lennart Blomqvist, Johan Hoffstedt, Erik Näslund, Tom Britton, Hernan Concha, Moustapha Hassan, Mikael Rydén, Jonas Frisén, Peter Arner, 2008, Dynamics of fat cell turnover in humans. Nature, 453, 783-7 [[http:// | + | Kirsty L Spalding, Erik Arner, Pål O Westermark, Samuel Bernard, Bruce A Buchholz, Olaf Bergmann, Lennart Blomqvist, Johan Hoffstedt, Erik Näslund, Tom Britton, Hernan Concha, Moustapha Hassan, Mikael Rydén, Jonas Frisén, Peter Arner, 2008, Dynamics of fat cell turnover in humans. Nature, 453, 783-7 [[http:// |
| - | + | ||
| - | Roland Schaette, Richard Kempter, 2008, Development of hyperactivity after hearing loss in a computational model of the dorsal cochlear nucleus depends on neuron response type. Hear. Res., 240, 57-72 [[http:// | + | Roland Schaette, Richard Kempter, 2008, Development of hyperactivity after hearing loss in a computational model of the dorsal cochlear nucleus depends on neuron response type. Hear. Res., 240, 57-72 [[http:// |
| - | + | ||
| - | Isao T Tokuda, Jaromir Horácek, Jan G Svec, Hanspeter Herzel, 2008, Bifurcations and chaos in register transitions of excised larynx experiments. Chaos, 18, 013102 [[http:// | + | Isao T Tokuda, Jaromir Horácek, Jan G Svec, Hanspeter Herzel, 2008, Bifurcations and chaos in register transitions of excised larynx experiments. Chaos, 18, 013102 |
| - | + | ||
| - | Roger J Sullivan, Edward H Hagen, Peter Hammerstein, | + | Roger J Sullivan, Edward H Hagen, Peter Hammerstein, |
| - | + | ||
| - | Anuradha Chauhan, Stefan Legewie, Pål O Westermark, Stephan Lorenzen, Hanspeter Herzel, 2008, A mesoscale model of G1/S phase transition in liver regeneration. J. Theor. Biol., 252, 465-73 [[http:// | + | Anuradha Chauhan, Stefan Legewie, Pål O Westermark, Stephan Lorenzen, Hanspeter Herzel, 2008, A mesoscale model of G1/S phase transition in liver regeneration. J. Theor. Biol., 252, 465-73 |
| - | + | ||
| - | Christian Leibold, Anja Gundlfinger, | + | Christian Leibold, Anja Gundlfinger, |
| - | + | ||
| - | James C W Locke, Pål O Westermark, Achim Kramer, Hanspeter Herzel, 2008, Global parameter search reveals design principles of the mammalian circadian clock. BMC Syst Biol, 2, 22 [[http:// | + | James C W Locke, Pål O Westermark, Achim Kramer, Hanspeter Herzel, 2008, Global parameter search reveals design principles of the mammalian circadian clock. BMC Syst Biol, 2, 22 [[http:// |
| - | + | ||
| - | Kirsten Hilgenboecker, | + | Kirsten Hilgenboecker, |
| - | + | ||
| - | Matthias E Futschik, Hanspeter Herzel, 2008, Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis. Bioinformatics, | + | Matthias E Futschik, Hanspeter Herzel, 2008, Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis. Bioinformatics, |
| - | + | ||
| - | Steven A Brown, Dieter Kunz, Amelie Dumas, Pål O Westermark, Katja Vanselow, Amely Tilmann-Wahnschaffe, | + | Steven A Brown, Dieter Kunz, Amelie Dumas, Pål O Westermark, Katja Vanselow, Amely Tilmann-Wahnschaffe, |
| - | + | ||
| - | Manuela Benary, Hanna Bendfeldt, Ria Baumgrass, Hanspeter Herzel, 2008, Modeling IL-2 gene expression in human regulatory T cells. Genome Inform, 20, 222-30 [[http://dx.doi.org/|(full text)]] | + | Manuela Benary, Hanna Bendfeldt, Ria Baumgrass, Hanspeter Herzel, 2008, Modeling IL-2 gene expression in human regulatory T cells. Genome Inform, 20, 222-30 |
| - | + | ||
| - | Kay Thurley, Christian Leibold, Anja Gundlfinger, | + | Kay Thurley, Christian Leibold, Anja Gundlfinger, |
| - | + | ||
| - | Coen P H Elemans, Riccardo Zaccarelli, Hanspeter Herzel, 2008, Biomechanics and control of vocalization in a non-songbird. J R Soc Interface, 5, 691-703 [[http:// | + | Coen P H Elemans, Riccardo Zaccarelli, Hanspeter Herzel, 2008, Biomechanics and control of vocalization in a non-songbird. J R Soc Interface, 5, 691-703 |
| - | + | ||
| - | Christian Leibold, Richard Kempter, 2008, Sparseness constrains the prolongation of memory lifetime via synaptic metaplasticity. Cereb. Cortex, 18, 67-77 [[http:// | + | Christian Leibold, Richard Kempter, 2008, Sparseness constrains the prolongation of memory lifetime via synaptic metaplasticity. Cereb. Cortex, 18, 67-77 [[http:// |
| - | + | ||
| === 2007 === | === 2007 === | ||
| - | Matthias E Futschik, Anna Tschaut, Gautam Chaurasia, Hanspeter Herzel, 2007, Graph-theoretical comparison reveals structural divergence of human protein interaction networks. Genome Inform, 18, 141-51 [[http://dx.doi.org/|(full text)]] | + | Matthias E Futschik, Anna Tschaut, Gautam Chaurasia, Hanspeter Herzel, 2007, Graph-theoretical comparison reveals structural divergence of human protein interaction networks. Genome Inform, 18, 141-51 |
| - | + | ||
| - | Katarzyna Bozek, Szymon M Kiełbasa, Achim Kramer, Hanspeter Herzel, 2007, Promoter analysis of Mammalian clock controlled genes. Genome Inform, 18, 65-74 [[http://dx.doi.org/|(full text)]] | + | Katarzyna Bozek, Szymon M Kiełbasa, Achim Kramer, Hanspeter Herzel, 2007, Promoter analysis of Mammalian clock controlled genes. Genome Inform, 18, 65-74 [[http://www.ncbi.nlm.nih.gov/ |
| - | + | ||
| - | Ilka M Axmann, Stefan Legewie, Hanspeter Herzel, 2007, A minimal circadian clock model. Genome Inform, 18, 54-64 [[http://dx.doi.org/|(full text)]] | + | Ilka M Axmann, Stefan Legewie, Hanspeter Herzel, 2007, A minimal circadian clock model. Genome Inform, 18, 54-64 [[http://www.ncbi.nlm.nih.gov/ |
| - | + | ||
| - | Szymon M Kiełbasa, Hanspeter Herzel, Ilka M Axmann, 2007, Regulatory elements of marine cyanobacteria. Genome Inform, 18, 1-11 [[http://dx.doi.org/|(full text)]] | + | Szymon M Kiełbasa, Hanspeter Herzel, Ilka M Axmann, 2007, Regulatory elements of marine cyanobacteria. Genome Inform, 18, 1-11 [[http://www.ncbi.nlm.nih.gov/ |
| - | + | ||
| - | Sergio Grimbs, Joachim Selbig, Sascha Bulik, Hermann-Georg Holzhütter, | + | Sergio Grimbs, Joachim Selbig, Sascha Bulik, Hermann-Georg Holzhütter, |
| - | + | ||
| - | Anja Gundlfinger, | + | Anja Gundlfinger, |
| - | + | ||
| - | Björn Voss, Gregor Gierga, Ilka M Axmann, Wolfgang R Hess, 2007, A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria. BMC Genomics, 8, 375 [[http:// | + | Björn Voss, Gregor Gierga, Ilka M Axmann, Wolfgang R Hess, 2007, A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria. BMC Genomics, 8, 375 [[http:// |
| - | + | ||
| - | Silke Reischl, Katja Vanselow, Pål O Westermark, Nadine Thierfelder, | + | Silke Reischl, Katja Vanselow, Pål O Westermark, Nadine Thierfelder, |
| - | + | ||
| - | Debbie Lindell, Jacob D Jaffe, Maureen L Coleman, Matthias E Futschik, Ilka M Axmann, Trent Rector, Gregory Kettler, Matthew B Sullivan, Robert Steen, Wolfgang R Hess, George M Church, Sallie W Chisholm, 2007, Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature, 449, 83-6 [[http:// | + | Debbie Lindell, Jacob D Jaffe, Maureen L Coleman, Matthias E Futschik, Ilka M Axmann, Trent Rector, Gregory Kettler, Matthew B Sullivan, Robert Steen, Wolfgang R Hess, George M Church, Sallie W Chisholm, 2007, Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature, 449, 83-6 [[http:// |
| - | + | ||
| - | Arndt Telschow, Matthias Flor, Yutaka Kobayashi, Peter Hammerstein, | + | Arndt Telschow, Matthias Flor, Yutaka Kobayashi, Peter Hammerstein, |
| - | + | ||
| - | Ralf Mrowka, Andreas Steege, Charlotte Kaps, Hanspeter Herzel, Bernd J Thiele, Pontus B Persson, Nils Blüthgen, 2007, Dissecting the action of an evolutionary conserved non-coding region on renin promoter activity. Nucleic Acids Res., 35, 5120-9 [[http:// | + | Ralf Mrowka, Andreas Steege, Charlotte Kaps, Hanspeter Herzel, Bernd J Thiele, Pontus B Persson, Nils Blüthgen, 2007, Dissecting the action of an evolutionary conserved non-coding region on renin promoter activity. Nucleic Acids Res., 35, 5120-9 |
| - | + | ||
| - | Ilka M Axmann, Julia Holtzendorff, | + | Ilka M Axmann, Julia Holtzendorff, |
| - | + | ||
| - | Isao T Tokuda, Jaromir Horácek, Jan G Svec, Hanspeter Herzel, 2007, Comparison of biomechanical modeling of register transitions and voice instabilities with excised larynx experiments. J. Acoust. Soc. Am., 122, 519-31 [[http:// | + | Isao T Tokuda, Jaromir Horácek, Jan G Svec, Hanspeter Herzel, 2007, Comparison of biomechanical modeling of register transitions and voice instabilities with excised larynx experiments. J. Acoust. Soc. Am., 122, 519-31 |
| - | + | ||
| - | Ralf Steuer, , Computational approaches to the topology, stability and dynamics of metabolic networks. Phytochemistry, | + | Ralf Steuer, , Computational approaches to the topology, stability and dynamics of metabolic networks. Phytochemistry, |
| - | + | ||
| - | Stefan Legewie, Birgit Schoeberl, Nils Blüthgen, Hanspeter Herzel, 2007, Competing docking interactions can bring about bistability in the MAPK cascade. Biophys. J., 93, 2279-88 [[http:// | + | Stefan Legewie, Birgit Schoeberl, Nils Blüthgen, Hanspeter Herzel, 2007, Competing docking interactions can bring about bistability in the MAPK cascade. Biophys. J., 93, 2279-88 |
| - | + | ||
| - | Christian Leibold, Richard Kempter, 2008, Sparseness constrains the prolongation of memory lifetime via synaptic metaplasticity. Cereb. Cortex, 18, 67-77 [[http:// | + | Christian Leibold, Richard Kempter, 2008, Sparseness constrains the prolongation of memory lifetime via synaptic metaplasticity. Cereb. Cortex, 18, 67-77 [[http:// |
| - | + | ||
| - | Samuel Bernard, Didier Gonze, Branka Cajavec, Hanspeter Herzel, Achim Kramer, 2007, Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus. PLoS Comput. Biol., 3, e68 [[http:// | + | Samuel Bernard, Didier Gonze, Branka Cajavec, Hanspeter Herzel, Achim Kramer, 2007, Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus. PLoS Comput. Biol., 3, e68 [[http:// |
| - | + | ||
| - | Sébastien Clodong, Ulf Dühring, Luiza Kronk, Annegret Wilde, Ilka Axmann, Hanspeter Herzel, Markus Kollmann, 2007, Functioning and robustness of a bacterial circadian clock. Mol. Syst. Biol., 3, 90 [[http:// | + | Sébastien Clodong, Ulf Dühring, Luiza Kronk, Annegret Wilde, Ilka Axmann, Hanspeter Herzel, Markus Kollmann, 2007, Functioning and robustness of a bacterial circadian clock. Mol. Syst. Biol., 3, 90 [[http:// |
| - | + | ||
| - | Ralf Steuer, Adriano Nunes Nesi, Alisdair R Fernie, Thilo Gross, Bernd Blasius, Joachim Selbig, 2007, From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinformatics, | + | Ralf Steuer, Adriano Nunes Nesi, Alisdair R Fernie, Thilo Gross, Bernd Blasius, Joachim Selbig, 2007, From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinformatics, |
| - | + | ||
| - | Nico Blüthgen, Florian Menzel, Thomas Hovestadt, Brigitte Fiala, Nils Blüthgen, 2007, Specialization, | + | Nico Blüthgen, Florian Menzel, Thomas Hovestadt, Brigitte Fiala, Nils Blüthgen, 2007, Specialization, |
| - | + | ||
| - | Matthias E Futschik, Gautam Chaurasia, Hanspeter Herzel, 2007, Comparison of human protein-protein interaction maps. Bioinformatics, | + | Matthias E Futschik, Gautam Chaurasia, Hanspeter Herzel, 2007, Comparison of human protein-protein interaction maps. Bioinformatics, |
| - | + | ||
| - | Gautam Chaurasia, Yasir Iqbal, Christian Hänig, Hanspeter Herzel, Erich E Wanker, Matthias E Futschik, 2007, UniHI: an entry gate to the human protein interactome. Nucleic Acids Res., 35, D590-4 [[http:// | + | Gautam Chaurasia, Yasir Iqbal, Christian Hänig, Hanspeter Herzel, Erich E Wanker, Matthias E Futschik, 2007, UniHI: an entry gate to the human protein interactome. Nucleic Acids Res., 35, D590-4 |
| - | + | ||
| - | Ralf Steuer, Katja Morgenthal, Wolfram Weckwerth, Joachim Selbig, 2007, A gentle guide to the analysis of metabolomic data. Methods Mol. Biol., 358, 105-26 [[http:// | + | Ralf Steuer, Katja Morgenthal, Wolfram Weckwerth, Joachim Selbig, 2007, A gentle guide to the analysis of metabolomic data. Methods Mol. Biol., 358, 105-26 |
| - | + | ||
| - | Pål O Westermark, Jeanette Hellgren Kotaleski, Anneli Björklund, Valdemar Grill, Anders Lansner, 2007, A mathematical model of the mitochondrial NADH shuttles and anaplerosis in the pancreatic beta-cell. Am. J. Physiol. Endocrinol. Metab., 292, E373-93 [[http:// | + | Pål O Westermark, Jeanette Hellgren Kotaleski, Anneli Björklund, Valdemar Grill, Anders Lansner, 2007, A mathematical model of the mitochondrial NADH shuttles and anaplerosis in the pancreatic beta-cell. Am. J. Physiol. Endocrinol. Metab., 292, E373-93 |
| - | + | ||
| === 2006 === | === 2006 === | ||
| - | Samuel Bernard, Hanspeter Herzel, 2006, Why do cells cycle with a 24 hour period? Genome Inform, 17, 72-9 [[http://dx.doi.org/|(full text)]] | + | Samuel Bernard, Hanspeter Herzel, 2006, Why do cells cycle with a 24 hour period? Genome Inform, 17, 72-9 [[http://www.ncbi.nlm.nih.gov/ |
| - | + | ||
| - | Gautam Chaurasia, Hanspeter Herzel, Erich E Wanker, Matthias E Futschik, 2006, Systematic functional assessment of human protein-protein interaction maps. Genome Inform, 17, 36-45 [[http://dx.doi.org/|(full text)]] | + | Gautam Chaurasia, Hanspeter Herzel, Erich E Wanker, Matthias E Futschik, 2006, Systematic functional assessment of human protein-protein interaction maps. Genome Inform, 17, 36-45 [[http://www.ncbi.nlm.nih.gov/ |
| - | + | ||
| - | Gautam Chaurasia, Yasir Iqbal, Christian Hänig, Hanspeter Herzel, Erich E Wanker, Matthias E Futschik, 2007, UniHI: an entry gate to the human protein interactome. Nucleic Acids Res., 35, D590-4 [[http:// | + | Gautam Chaurasia, Yasir Iqbal, Christian Hänig, Hanspeter Herzel, Erich E Wanker, Matthias E Futschik, 2007, UniHI: an entry gate to the human protein interactome. Nucleic Acids Res., 35, D590-4 |
| - | + | ||
| - | Nils Blüthgen, 2006, Sequestration shapes the response of signal transduction cascades. IUBMB Life, 58, 659-63 [[http:// | + | Nils Blüthgen, 2006, Sequestration shapes the response of signal transduction cascades. IUBMB Life, 58, 659-63 |
| - | + | ||
| - | Katja Vanselow, Jens T Vanselow, Pål O Westermark, Silke Reischl, Bert Maier, Thomas Korte, Andreas Herrmann, Hanspeter Herzel, Andreas Schlosser, Achim Kramer, 2006, Differential effects of PER2 phosphorylation: | + | Katja Vanselow, Jens T Vanselow, Pål O Westermark, Silke Reischl, Bert Maier, Thomas Korte, Andreas Herrmann, Hanspeter Herzel, Andreas Schlosser, Achim Kramer, 2006, Differential effects of PER2 phosphorylation: |
| - | + | ||
| - | Stefan Legewie, Nils Blüthgen, Hanspeter Herzel, 2006, Mathematical modeling identifies inhibitors of apoptosis as mediators of positive feedback and bistability. PLoS Comput. Biol., 2, e120 [[http:// | + | Stefan Legewie, Nils Blüthgen, Hanspeter Herzel, 2006, Mathematical modeling identifies inhibitors of apoptosis as mediators of positive feedback and bistability. PLoS Comput. Biol., 2, e120 [[http:// |
| - | + | ||
| - | Ovidiu König, Roland Schaette, Richard Kempter, Manfred Gross, 2006, Course of hearing loss and occurrence of tinnitus. Hear. Res., 221, 59-64 [[http:// | + | Ovidiu König, Roland Schaette, Richard Kempter, Manfred Gross, 2006, Course of hearing loss and occurrence of tinnitus. Hear. Res., 221, 59-64 [[http:// |
| - | + | ||
| - | Ralf Steuer, Peter Humburg, Joachim Selbig, 2006, Validation and functional annotation of expression-based clusters based on gene ontology. BMC Bioinformatics, | + | Ralf Steuer, Peter Humburg, Joachim Selbig, 2006, Validation and functional annotation of expression-based clusters based on gene ontology. BMC Bioinformatics, |
| - | + | ||
| - | Nico Blüthgen, Florian Menzel, Nils Blüthgen, 2006, Measuring specialization in species interaction networks. BMC Ecol., 6, 9 [[http:// | + | Nico Blüthgen, Florian Menzel, Nils Blüthgen, 2006, Measuring specialization in species interaction networks. BMC Ecol., 6, 9 [[http:// |
| - | + | ||
| - | Ralf Steuer, Thilo Gross, Joachim Selbig, Bernd Blasius, 2006, Structural kinetic modeling of metabolic networks. Proc. Natl. Acad. Sci. U.S.A., 103, 11868-73 [[http:// | + | Ralf Steuer, Thilo Gross, Joachim Selbig, Bernd Blasius, 2006, Structural kinetic modeling of metabolic networks. Proc. Natl. Acad. Sci. U.S.A., 103, 11868-73 |
| - | + | ||
| - | Pål O Westermark, Jeanette Hellgren Kotaleski, Anneli Björklund, Valdemar Grill, Anders Lansner, 2007, A mathematical model of the mitochondrial NADH shuttles and anaplerosis in the pancreatic beta-cell. Am. J. Physiol. Endocrinol. Metab., 292, E373-93 [[http:// | + | Pål O Westermark, Jeanette Hellgren Kotaleski, Anneli Björklund, Valdemar Grill, Anders Lansner, 2007, A mathematical model of the mitochondrial NADH shuttles and anaplerosis in the pancreatic beta-cell. Am. J. Physiol. Endocrinol. Metab., 292, E373-93 |
| - | + | ||
| - | Roland Schaette, Richard Kempter, 2006, Development of tinnitus-related neuronal hyperactivity through homeostatic plasticity after hearing loss: a computational model. Eur. J. Neurosci., 23, 3124-38 [[http:// | + | Roland Schaette, Richard Kempter, 2006, Development of tinnitus-related neuronal hyperactivity through homeostatic plasticity after hearing loss: a computational model. Eur. J. Neurosci., 23, 3124-38 |
| - | + | ||
| - | Lokesh Kumar, Matthias Futschik, Hanspeter Herzel, 2006, DNA motifs and sequence periodicities. In Silico Biol. (Gedrukt), 6, 71-8 [[http://dx.doi.org/|(full text)]] | + | Lokesh Kumar, Matthias Futschik, Hanspeter Herzel, 2006, DNA motifs and sequence periodicities. In Silico Biol. (Gedrukt), 6, 71-8 [[http://www.ncbi.nlm.nih.gov/ |
| - | + | ||
| - | Ralf Steuer, 2006, Review: on the analysis and interpretation of correlations in metabolomic data. Brief. Bioinformatics, | + | Ralf Steuer, 2006, Review: on the analysis and interpretation of correlations in metabolomic data. Brief. Bioinformatics, |
| - | + | ||
| - | Olof Leimar, Peter Hammerstein, | + | Olof Leimar, Peter Hammerstein, |
| - | + | ||
| - | Ulf Dühring, Ilka M Axmann, Wolfgang R Hess, Annegret Wilde, 2006, An internal antisense RNA regulates expression of the photosynthesis gene isiA. Proc. Natl. Acad. Sci. U.S.A., 103, 7054-8 [[http:// | + | Ulf Dühring, Ilka M Axmann, Wolfgang R Hess, Annegret Wilde, 2006, An internal antisense RNA regulates expression of the photosynthesis gene isiA. Proc. Natl. Acad. Sci. U.S.A., 103, 7054-8 |
| - | + | ||
| - | Samuel Bernard, Branka Cajavec, Laurent Pujo-Menjouet, | + | Samuel Bernard, Branka Cajavec, Laurent Pujo-Menjouet, |
| - | + | ||
| - | Christian Leibold, Richard Kempter, 2006, Memory capacity for sequences in a recurrent network with biological constraints. Neural Comput, 18, 904-41 [[http:// | + | Christian Leibold, Richard Kempter, 2006, Memory capacity for sequences in a recurrent network with biological constraints. Neural Comput, 18, 904-41 |
| - | + | ||
| - | Nils Blüthgen, Frank J Bruggeman, Stefan Legewie, Hanspeter Herzel, Hans V Westerhoff, Boris N Kholodenko, 2006, Effects of sequestration on signal transduction cascades. FEBS J., 273, 895-906 [[http:// | + | Nils Blüthgen, Frank J Bruggeman, Stefan Legewie, Hanspeter Herzel, Hans V Westerhoff, Boris N Kholodenko, 2006, Effects of sequestration on signal transduction cascades. FEBS J., 273, 895-906 |
| - | + | ||
| - | Edward H Hagen, Peter Hammerstein, | + | Edward H Hagen, Peter Hammerstein, |
| - | + | ||
| - | Branka Cajavec, Hanspeter Herzel, Samuel Bernard, 2006, Death of neuronal clusters contributes to variance of age at onset in Huntington' | + | Branka Cajavec, Hanspeter Herzel, Samuel Bernard, 2006, Death of neuronal clusters contributes to variance of age at onset in Huntington' |
| - | + | ||
| - | Obul Reddy Bandapalli, Martina Geheeb, Dennis Kobelt, Katrin Kuehnle, Sefer Elezkurtaj, Jens Herrmann, Axel M Gressner, Ralf Weiskirchen, | + | Obul Reddy Bandapalli, Martina Geheeb, Dennis Kobelt, Katrin Kuehnle, Sefer Elezkurtaj, Jens Herrmann, Axel M Gressner, Ralf Weiskirchen, |
| - | + | ||
| === 2005 === | === 2005 === | ||
| - | Peter Hammerstein, | + | Peter Hammerstein, |
| - | | + | |
| + | Branka Cajavec, Samuel Bernard, Hanspeter Herzel, 2005, Aggregation in Huntington' | ||
| - | Branka Cajavec, | + | Nils Blüthgen, Karsten Brand, |
| - | + | ||
| - | Nils Blüthgen, Karsten Brand, Branka Cajavec, Maciej Swat, Hanspeter Herzel, Dieter Beule, 2005, Biological profiling | + | Arndt Telschow, Peter Hammerstein, John H Werren, 2005, The effect |
| - | + | ||
| - | Arndt Telschow, Peter Hammerstein, John H Werren, 2005, The effect | + | Stefan Legewie, Nils Blüthgen, Reinhold Schäfer, Hanspeter Herzel, 2005, Ultrasensitization: |
| - | + | ||
| - | Stefan Legewie, Nils Blüthgen, Reinhold Schäfer, Hanspeter Herzel, 2005, Ultrasensitization: | + | Szymon M Kielbasa, Didier Gonze, Hanspeter Herzel, 2005, Measuring similarities between transcription factor binding sites. BMC Bioinformatics, 6, |
| - | + | ||
| - | Szymon | + | Ilka M Axmann, Philip Kensche, Jörg Vogel, Stefan Kohl, Hanspeter Herzel, Wolfgang R Hess, 2005, Identification of cyanobacterial non-coding RNAs by comparative genome analysis. Genome Biol., 6, |
| - | + | ||
| - | Ilka M Axmann, Philip Kensche, Jörg Vogel, Stefan Kohl, Hanspeter Herzel, Wolfgang R Hess, 2005, Identification | + | Axel Kowald, Marina Jendrach, Sandra Pohl, Jürgen Bereiter-Hahn, Peter Hammerstein, 2005, On the relevance |
| - | + | ||
| - | Axel Kowald, Marina Jendrach, Sandra Pohl, Jürgen Bereiter-Hahn, | + | David T Blake, Fabrizio Strata, Richard Kempter, Michael M Merzenich, 2005, Experience-dependent plasticity in S1 caused by noncoincident inputs. J. Neurophysiol., 94, |
| - | + | ||
| - | David T Blake, Fabrizio Strata, Richard Kempter, Michael M Merzenich, 2005, Experience-dependent plasticity in S1 caused by noncoincident inputs. J. Neurophysiol., 94, | + | Stefan Legewie, Nils Blüthgen, Hanspeter Herzel, 2005, Quantitative analysis of ultrasensitive responses. FEBS J., 272, |
| - | + | ||
| - | Stefan Legewie, Nils Blüthgen, Hanspeter Herzel, 2005, Quantitative analysis | + | Marina Jendrach, Sandra Pohl, Monika Vöth, Axel Kowald, Peter Hammerstein, |
| - | + | ||
| - | Marina Jendrach, Sandra Pohl, Monika Vöth, Axel Kowald, | + | Peter Hammerstein, |
| - | + | ||
| - | Peter Hammerstein, 2005, Strategic analysis in evolutionary genetics and the theory | + | Didier Gonze, Samuel Bernard, Christian Waltermann, Achim Kramer, Hanspeter Herzel, 2005, Spontaneous synchronization |
| - | + | ||
| - | Didier Gonze, Samuel Bernard, Christian Waltermann, Achim Kramer, Hanspeter Herzel, 2005, Spontaneous synchronization | + | Malte Kleinschmidt, Olav Grundmann, Nils Blüthgen, Hans-Ulrich Mösch, Gerhard H Braus, 2005, Transcriptional profiling |
| - | + | ||
| - | Malte Kleinschmidt, Olav Grundmann, Nils Blüthgen, Hans-Ulrich Mösch, Gerhard H Braus, 2005, Transcriptional profiling | + | Hermann Wagner, Sandra Brill, Richard Kempter, Catherine E Carr, 2005, Microsecond precision |
| - | + | ||
| - | Hermann Wagner, Sandra Brill, Richard Kempter, Catherine E Carr, 2005, Microsecond precision of phase delay in the auditory system of the barn owl. J. Neurophysiol., 94, | + | Isao Tokuda, Hanspeter Herzel, 2005, Detecting synchronizations |
| - | + | ||
| - | Isao Tokuda, Hanspeter Herzel, 2005, Detecting synchronizations | + | Florian Geier, Sabine Becker-Weimann, |
| - | + | ||
| - | Florian Geier, Sabine Becker-Weimann, | + | Nils Blüthgen, Szymon M Kiełbasa, Hanspeter Herzel, 2005, Inferring combinatorial regulation |
| - | + | ||
| - | Nils Blüthgen, Szymon M Kiełbasa, Hanspeter Herzel, 2005, Inferring combinatorial regulation | + | Matthias Truss, Maciej Swat, Szymon M Kielbasa, Reinhold Schäfer, Hanspeter Herzel, Christian Hagemeier, 2005, HuSiDa--the human siRNA database: an open-access database for published functional siRNA sequences and technical details |
| - | + | ||
| - | Matthias Truss, Maciej Swat, Szymon M Kielbasa, Reinhold Schäfer, Hanspeter Herzel, Christian Hagemeier, 2005, HuSiDa--the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells. Nucleic Acids Res., 33, D108-11 [[http:// | ||
| - | |||
| + | | ||