Show pageOld revisionsBacklinksBack to top This page is read only. You can view the source, but not change it. Ask your administrator if you think this is wrong. <html> <h1>ITB Meeting Schedule</h1> <a href="#speakers">Upcoming Speakers</a><br /> <a href="#seminars">Past Seminars</a><br /> <a href="#organisation">Organisation</a><br /> <a href="#alumni">Meeting Alumni</a> <h2 id="speakers">Upcoming Speakers</h2> <table class="table"> <thead> <tr> <th>Predicted Date [*]</th> <th>Name</th> <th>Group</th> <th>Location</th> </tr> </thead> <tbody> <tr> <td>2023-10-10</td> <td><b> <a href="https://livermetabolism.com">König, Matthias (PI)</a> </b></td> <td>Systems Biology of Liver</td> <td></td> </tr> <tr> <td>2023-10-17</td> <td><b> Yalcin, Müge </b></td> <td>Systems Biology of Cancer</td> <td></td> </tr> <tr> <td>2023-10-24</td> <td><b> Masserini, Stefano </b></td> <td>Theoretical Neuroscience</td> <td></td> </tr> <tr> <td>2023-10-31</td> <td><b> Höper, Rune </b></td> <td>Metabolic Networks</td> <td></td> </tr> <tr> <td>2023-11-07</td> <td><b> Bergerot, Clemence </b></td> <td>Collective Information Processing</td> <td></td> </tr> <tr> <td>2023-11-14</td> <td><b> Kuokkanen, Paula </b></td> <td>Theoretical Neuroscience</td> <td></td> </tr> <tr> <td>2023-11-21</td> <td><b> <a href="https://itb.biologie.hu-berlin.de/wiki/members/schuppner">Schuppner, Rike-Benjamin</a> </b></td> <td>System Administration</td> <td></td> </tr> <tr> <td>2023-11-28</td> <td><b> Sevinchan, Yunus </b></td> <td>Collective Information Processing</td> <td></td> </tr> <tr> <td>2023-12-05</td> <td><b> Schreiber, Susanne (PI) </b></td> <td>Computational Neurophysiology</td> <td></td> </tr> <tr> <td>2023-12-12</td> <td><b> Astaburuaga, Rosario </b></td> <td>Systems Biology of Molecular Networks</td> <td></td> </tr> <tr> <td>2023-12-19</td> <td><b> Govoni, Patrick </b></td> <td>Collective Information Processing</td> <td></td> </tr> <tr> <td>2024-01-02</td> <td><b> Drangmeister, Moritz </b></td> <td>Computational Neurophysiology</td> <td></td> </tr> <tr> <td>2024-01-09</td> <td><b> Komkova, Daria </b></td> <td>Metabolic Networks</td> <td></td> </tr> <tr> <td>2024-01-16</td> <td><b> Pallasdies, Fabian </b></td> <td>Computational Neurophysiology</td> <td></td> </tr> <tr> <td>2024-01-23</td> <td><b> Lecheval, Valentin </b></td> <td>Collective Information Processing</td> <td></td> </tr> <tr> <td>2024-01-30</td> <td><b> <a href="http://itb.biologie.hu-berlin.de/~bharath/">Ananthasubramaniam, Bharath (PI)</a> </b></td> <td>Rhythmic Living Systems</td> <td></td> </tr> <tr> <td>2024-02-06</td> <td><b> Norton, Phillip </b></td> <td>Computational Neurophysiology</td> <td></td> </tr> <tr> <td>2024-02-13</td> <td><b> Schmal, Christoph (PI) </b></td> <td>Computational Chronobiology</td> <td></td> </tr> <tr> <td>2024-02-20</td> <td><b> Gowers, Robert </b></td> <td>Computational Neurophysiology</td> <td></td> </tr> <tr> <td>2024-02-27</td> <td><b> Hurtado, Javier Marchena </b></td> <td>Systems Biology of Molecular Networks</td> <td></td> </tr> <tr> <td>2024-03-05</td> <td><b> Mahraz, Behbood </b></td> <td>Computational Neurophysiology</td> <td></td> </tr> <tr> <td>2024-03-12</td> <td><b> Steuer, Ralf (PI) </b></td> <td>Metabolic Networks</td> <td></td> </tr> <tr> <td>2024-03-19</td> <td><b> Auer, Naomi </b></td> <td>Theoretical Neuroscience</td> <td></td> </tr> <tr> <td>2024-03-26</td> <td><b> Niemeyer, Nelson </b></td> <td>Computational Neurophysiology</td> <td></td> </tr> <tr> <td>2024-04-02</td> <td><b> Lemaire, Louisiane </b></td> <td>Computational Neurophysiology</td> <td></td> </tr> <tr> <td>2024-04-09</td> <td><b> Schleimer, Jan-Hendrik </b></td> <td>Computational Neurophysiology</td> <td></td> </tr> <tr> <td>2024-04-16</td> <td><b> Del Olmo, Marta </b></td> <td>Molecular and Cellular Evolution</td> <td></td> </tr> <tr> <td>2024-04-23</td> <td><b> Karimian, Maryam </b></td> <td>Collective Information Processing</td> <td></td> </tr> <tr> <td>2024-04-30</td> <td><b> Cano, Gaspar </b></td> <td>Theoretical Neuroscience</td> <td></td> </tr> <tr> <td>2024-05-07</td> <td><b> Wilkins, Adams </b></td> <td>ITB</td> <td></td> </tr> <tr> <td>2024-05-14</td> <td><b> Usatikova, Eleonora </b></td> <td>Molecular and Cellular Evolution</td> <td></td> </tr> <tr> <td>2024-05-21</td> <td><b> <a href="https://itb.biologie.hu-berlin.de/wiki/members/klinger">Klinger, Bertram</a> </b></td> <td>Systems Biology of Molecular Networks</td> <td></td> </tr> <tr> <td>2024-05-28</td> <td><b> Grabe, Saskia </b></td> <td>Molecular and Cellular Evolution</td> <td></td> </tr> <tr> <td>2024-06-04</td> <td><b> <a href="http://www.sys-bio.net/">Bluethgen, Nils (PI)</a> </b></td> <td>Systems Biology of Molecular Networks</td> <td></td> </tr> <tr> <td>2024-06-11</td> <td><b> Pfeiffer, Paul </b></td> <td>Computational Neurophysiology</td> <td></td> </tr> <tr> <td>2024-06-18</td> <td><b> Hammerstein, Peter (PI) </b></td> <td>Evolution of Organismic Systems</td> <td></td> </tr> <tr> <td>2024-06-25</td> <td><b> Weerdmeester, Liz </b></td> <td>Computational Neurophysiology</td> <td></td> </tr> <tr> <td>2024-07-02</td> <td><b> Romanczuk, Pawel (PI) </b></td> <td>Collective Information Processing</td> <td></td> </tr> <tr> <td>2024-07-09</td> <td><b> Herzel, Hanspeter (PI) </b></td> <td>Molecular and Cellular Evolution</td> <td></td> </tr> <tr> <td>2024-07-16</td> <td><b> Zheng, Yating </b></td> <td>Collective Information Processing</td> <td></td> </tr> </tbody> </table> [*] Dates are predicted by skipping German holidays on Tuesdays in the python <code>holidays</code> package. Holiday breaks like over Christmas and local Berlin holidays are not accounted for and can result in changes of the final date of your presentation. <h2 id="seminars">Past Seminars</h2> <table class="table"> <thead> <tr> <th>Date</th> <th>Speaker</th> <th>Title</th> <th>Slides</th> </tr> </thead> <tbody> <tr> <td>2023-09-27</td> <td> <b> Zheng, Yating<br /> </b> Collective Information Processing </td> <td>Collective shepherding</td> <td></td> <td></td> </tr> <tr> <td>2023-09-19</td> <td> <b> Herzel, Hanspeter (PI)<br /> </b> Molecular and Cellular Evolution </td> <td>My 40 years with oscillators</td> <td></td> <td></td> </tr> <tr> <td>2023-09-12</td> <td> <b> Weerdmeester, Liz<br /> </b> Computational Neurophysiology </td> <td>Fitting Recurrent Neural Networks to a database of electrophysiology recordings to prove the existence and characteristics of dynamical neuron types</td> <td></td> <td></td> </tr> <tr> <td>2023-09-05</td> <td> <b> Hammerstein, Peter (PI)<br /> </b> Evolution of Organismic Systems </td> <td>A BIOLOGICAL EMPLOYMENT MODEL OF REPRODUCTIVE INEQUALITY</td> <td></td> <td></td> </tr> <tr> <td>2023-07-11</td> <td> <b> Pfeiffer, Paul<br /> </b> Computational Neurophysiology </td> <td>Large scale analysis of neural excitability</td> <td></td> <td></td> </tr> <tr> <td>2023-07-04</td> <td> <b> <a href="http://www.sys-bio.net/">Bluethgen, Nils (PI)</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Network Reconstruction: Then and Now</td> <td></td> <td></td> </tr> <tr> <td>2023-06-27</td> <td> <b> Grabe, Saskia<br /> </b> Molecular and Cellular Evolution </td> <td></td> <td></td> <td></td> </tr> <tr> <td>2023-06-20</td> <td> <b> Romanczuk, Pawel (PI)<br /> </b> Collective Information Processing </td> <td>Social dilemmas of sociality due to beneficial and costly contagion</td> <td></td> <td></td> </tr> <tr> <td>2023-06-13</td> <td> <b> <a href="https://itb.biologie.hu-berlin.de/wiki/members/klinger">Klinger, Bertram</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Mutagenesis screen to identify driver genes for AML in mice with ASXL1mut background</td> <td></td> <td></td> </tr> <tr> <td>2023-05-23</td> <td> <b> Wilkins, Adams<br /> </b> ITB </td> <td>Why are the brains of domesticated mammals smaller than their wild forebear strains?</td> <td></td> <td></td> </tr> <tr> <td>2023-05-09</td> <td> <b> Del Olmo, Marta<br /> </b> Molecular and Cellular Evolution </td> <td>Are circadian periods and amplitudes correlated? A new twist in the story</td> <td></td> <td></td> </tr> <tr> <td>2023-05-02</td> <td> <b> Schleimer, Jan-Hendrik<br /> </b> Computational Neurophysiology </td> <td>Fast flapping flyers II: Should we model the development of a central pattern generator in Drosophila?</td> <td></td> <td></td> </tr> <tr> <td>2023-04-25</td> <td> <b> Lemaire, Louisiane<br /> </b> Computational Neurophysiology </td> <td>Integrate-and-fire neuron with potassium dynamics capturing activity-mediated switches in firing regimes</td> <td></td> <td></td> </tr> <tr> <td>2023-04-18</td> <td> <b> Niemeyer, Nelson<br /> </b> Computational Neurophysiology </td> <td>Fast flapping fliers: Modelling the Drosophila wing motor system</td> <td></td> <td></td> </tr> <tr> <td>2023-03-28</td> <td> <b> Auer, Naomi<br /> </b> Theoretical Neuroscience </td> <td>Differences in population sparseness can explain different memory consolidation speeds</td> <td></td> <td></td> </tr> <tr> <td>2023-03-07</td> <td> <b> Mahraz, Behbood<br /> </b> Computational Neurophysiology </td> <td>Slow Rhythmic Dynamic Induced by Extracellular Potassium Concentration </td> <td></td> <td></td> </tr> <tr> <td>2023-02-21</td> <td> <b> Gowers, Robert<br /> </b> Computational Neurophysiology </td> <td>How neuronal morphology affects the network state via the excitability type</td> <td></td> <td></td> </tr> <tr> <td>2023-02-07</td> <td> <b> Norton, Phillip<br /> </b> Computational Neurophysiology </td> <td>Neural optimization: Understanding trade-offs with Pareto theory</td> <td></td> <td></td> </tr> <tr> <td>2023-01-31</td> <td> <b> <a href="http://itb.biologie.hu-berlin.de/~bharath/">Ananthasubramaniam, Bharath (PI)</a><br /> </b> Rhythmic Living Systems </td> <td>Cyclic Ordering with Feature Extraction (COFE) identifies circadian biomarkers from data without time labels</td> <td></td> <td></td> </tr> <tr> <td>2023-01-24</td> <td> <b> Lauterback, Elvira<br /> </b> </td> <td>Health and Safety in the workplace</td> <td></td> <td></td> </tr> <tr> <td>2023-01-17</td> <td> <b> Komkova, Daria<br /> </b> Metabolic Networks </td> <td>Model reduction of genome-scale metabolic models for the development of stoichiometrically correct kinetic models</td> <td></td> <td></td> </tr> <tr> <td>2023-01-10</td> <td> <b> Relógio, Angela (PI)<br /> </b> </td> <td>A career in academic research: time matters!</td> <td></td> <td></td> </tr> <tr> <td>2022-12-13</td> <td> <b> Pallasdies, Fabian<br /> </b> Computational Neurophysiology </td> <td>Studying computational models of jellyfish nervous systems regarding motor control, embodiment and evolution</td> <td></td> <td></td> </tr> <tr> <td>2022-12-06</td> <td> <b> Gutu, Nica<br /> </b> </td> <td>How cells respond to DNA damage at single-cell level?</td> <td></td> <td></td> </tr> <tr> <td>2022-11-29</td> <td> <b> Kwon, Gino<br /> </b> Systems Biology of Inflammation </td> <td>Genomic profiling upon T-cell stimulation in Autoimmune disease</td> <td></td> <td></td> </tr> <tr> <td>2022-11-22</td> <td> <b> Drangmeister, Moritz<br /> </b> Computational Neurophysiology </td> <td>On the ground state statistics of a balanced network of homoclinic neurons in the bistable regime</td> <td></td> <td></td> </tr> <tr> <td>2022-11-15</td> <td> <b> Astaburuaga, Rosario<br /> </b> Systems Biology of Molecular Networks </td> <td>What determines the fate of HNSCC cells after radiation therapy?</td> <td></td> <td></td> </tr> <tr> <td>2022-11-08</td> <td> <b> Petković, Marina<br /> </b> </td> <td>Differential expression of the circadian clock network correlates with tumor progression in gliomas</td> <td></td> <td></td> </tr> <tr> <td>2022-11-01</td> <td> <b> Schmal, Christoph (PI)<br /> </b> Computational Chronobiology </td> <td>The mammalian circadian clock: a network of coupled oscillators</td> <td></td> <td></td> </tr> <tr> <td>2022-10-25</td> <td> <b> Mohsen Raoufi<br /> </b> </td> <td>Speed accuracy tradeoffs in spatial collective estimation: a swarm robotic implementation</td> <td></td> <td></td> </tr> <tr> <td>2022-10-18</td> <td> <b> <a href="https://itb.biologie.hu-berlin.de/wiki/members/schuppner">Schuppner, Rike-Benjamin</a><br /> </b> System Administration </td> <td>Your way around the ITB infrastructure</td> <td></td> <td></td> </tr> <tr> <td>2022-10-11</td> <td> <b> Kuokkanen, Paula<br /> </b> Theoretical Neuroscience </td> <td>Inhibitory synaptic dynamics in the extracellular field potentials of the nucleus laminaris of the barn owl.</td> <td></td> <td></td> </tr> <tr> <td>2022-09-27</td> <td> <b> Bartashevich, Palina<br /> </b> </td> <td>Collective anti-predator escape in fish schools</td> <td></td> <td></td> </tr> <tr> <td>2022-09-13</td> <td> <b> Höper, Rune<br /> </b> Metabolic Networks </td> <td>Flux Balance Analysis of the cyanobacterium Synechocystis sp. PCC 6803</td> <td></td> <td></td> </tr> <tr> <td>2022-09-06</td> <td> <b> <a href="https://livermetabolism.com">König, Matthias (PI)</a><br /> </b> Systems Biology of Liver </td> <td>None</td> <td></td> <td></td> </tr> <tr> <td>2022-07-12</td> <td> <b> Steuer, Ralf (PI)<br /> </b> Metabolic Networks </td> <td>Green biotechnology and the fastest-growing cyanobacterium</td> <td></td> <td></td> </tr> <tr> <td>2022-07-05</td> <td> <b> Gomez, Luis<br /> </b> </td> <td>Intermittent collective motion in sheep: temporal leaders and information flow</td> <td></td> <td></td> </tr> <tr> <td>2022-06-28</td> <td> <b> Weerdmeester, Liz<br /> </b> Computational Neurophysiology </td> <td>Design Principles of Environmentally Robust Pacemaker Driven Excitable Cells</td> <td></td> <td></td> </tr> <tr> <td>2022-06-21</td> <td> <b> Hammerstein, Peter (PI)<br /> </b> Evolution of Organismic Systems </td> <td>Evolution and the puzzle of cooperation</td> <td></td> <td></td> </tr> <tr> <td>2022-06-07</td> <td> <b> <a href="http://www.sys-bio.net/">Bluethgen, Nils (PI)</a><br /> </b> Systems Biology of Molecular Networks </td> <td>None</td> <td></td> <td></td> </tr> <tr> <td>2022-05-24</td> <td> <b> Herzel, Hanspeter (PI)<br /> </b> Molecular and Cellular Evolution </td> <td>Why do we get up 90 min earlier if our clock runs 12 min faster?</td> <td></td> <td></td> </tr> <tr> <td>2022-05-17</td> <td> <b> Peidli, Stefan<br /> </b> </td> <td>Not-so-single cell RNA-seq: cell-cell interactions from doublets</td> <td></td> <td></td> </tr> <tr> <td>2022-05-10</td> <td> <b> Malhan, Deeksha<br /> </b> </td> <td>Transcriptome analysis of alternative splicing in clock disrupted cancer cells</td> <td></td> <td></td> </tr> <tr> <td>2022-05-03</td> <td> <b> Del Olmo, Marta<br /> </b> Molecular and Cellular Evolution </td> <td>Inter-layer and inter-individual variability of circadian gene expression in human skin</td> <td></td> <td></td> </tr> <tr> <td>2022-04-26</td> <td> <b> Usatikova, Eleonora<br /> </b> Molecular and Cellular Evolution </td> <td>Analysis of daily rhythmicity in activity of cancer-related pathways with a gene expression signature-based approach</td> <td></td> <td></td> </tr> <tr> <td>2022-04-19</td> <td> <b> Grzegorzewski, Jan<br /> </b> </td> <td>The role of the CYP2D6 polymorphism on dextromethorphan pharmacokinetics: A physiological-based pharmacokinetics modeling approach.</td> <td></td> <td></td> </tr> <tr> <td>2022-04-12</td> <td> <b> Fischer, Matthias<br /> </b> </td> <td>On tumoural growth and treatment under cellular dedifferentiation.</td> <td></td> <td></td> </tr> <tr> <td>2022-04-05</td> <td> <b> Aboumanify, Ouda<br /> </b> </td> <td></td> <td></td> <td></td> </tr> <tr> <td>2022-03-22</td> <td> <b> <a href="https://itb.biologie.hu-berlin.de/wiki/members/klinger">Klinger, Bertram</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Using tap-seq to infer gene regulatory networks - a start</td> <td></td> <td></td> </tr> <tr> <td>2022-03-15</td> <td> <b> Cano, Gaspar<br /> </b> Theoretical Neuroscience </td> <td>Memory replay and disinhibition mechanisms in sharp wave-ripples</td> <td></td> <td></td> </tr> <tr> <td>2022-03-01</td> <td> <b> Grabe, Saskia<br /> </b> Molecular and Cellular Evolution </td> <td>Synergies of multiple zeitgebers tune entrainment</td> <td></td> <td></td> </tr> <tr> <td>2022-02-22</td> <td> <b> Schleimer, Jan-Hendrik<br /> </b> Computational Neurophysiology </td> <td>Neuronal Excitability or Networks?</td> <td></td> <td></td> </tr> <tr> <td>2022-02-15</td> <td> <b> Sell, Thomas<br /> </b> </td> <td>A look into phenotypic plasticity during colorectal cancer progression</td> <td></td> <td></td> </tr> <tr> <td>2022-02-08</td> <td> <b> Niemeyer, Nelson<br /> </b> Computational Neurophysiology </td> <td>Electrical synapses desynchronize the Drosophila wing motor network</td> <td></td> <td></td> </tr> <tr> <td>2022-01-18</td> <td> <b> Mahraz, Behbood<br /> </b> Computational Neurophysiology </td> <td>A PCA method for analysis of microelectrode array data on KCC2 cotransporter effect in the neuronal network level</td> <td></td> <td></td> </tr> <tr> <td>2022-01-11</td> <td> <b> Auer, Naomi<br /> </b> Theoretical Neuroscience </td> <td>Could differences in population sparseness explain different memory consolidation speeds?</td> <td></td> <td></td> </tr> <tr> <td>2021-12-07</td> <td> <b> <a href="~hesse">Hesse, Janina</a><br /> </b> Computational Neurophysiology </td> <td>Chronotherapy in a dish: Modeling time-dependent toxicity of a cancer drug</td> <td></td> <td></td> </tr> <tr> <td>2021-11-23</td> <td> <b> Norton, Phillip<br /> </b> Computational Neurophysiology </td> <td>Cortical control of vocal turn taking in zebra finches</td> <td></td> <td></td> </tr> <tr> <td>2021-11-16</td> <td> <b> Pallasdies, Fabian<br /> </b> Computational Neurophysiology </td> <td>From Single Neurons to Behavior in Two Jellyfish Species</td> <td></td> <td></td> </tr> <tr> <td>2021-11-09</td> <td> <b> Wilkins, Adams<br /> </b> ITB </td> <td>Charles Darwin's Mystery Illness: Using 21st century biology to solve a 19th century medical 'cold case' </td> <td></td> <td></td> </tr> <tr> <td>2021-11-02</td> <td> <b> Gomez, Luis<br /> </b> </td> <td>The Role Of Speed Adaptation In Collective Motion</td> <td></td> <td></td> </tr> <tr> <td>2021-10-24</td> <td> <b> <a href="https://itb.biologie.hu-berlin.de/wiki/members/schuppner">Schuppner, Rike-Benjamin</a><br /> </b> System Administration </td> <td>If a computer crashes and no one is logged in to notice it, does IT make a sound? — Techsplaning the ITB infrastructure.</td> <td></td> <td></td> </tr> <tr> <td>2021-10-17</td> <td> <b> <a href="http://itb.biologie.hu-berlin.de/~bharath/">Ananthasubramaniam, Bharath (PI)</a><br /> </b> Rhythmic Living Systems </td> <td>Difference of significance is not significance of the difference</td> <td></td> <td></td> </tr> <tr> <td>2021-10-12</td> <td> <b> Petković, Marina<br /> </b> </td> <td>Investigating tumor evolution using allele-specific copy-number profiles from multi-region data</td> <td></td> <td></td> </tr> <tr> <td>2021-10-05</td> <td> <b> Schreiber, Susanne (PI)<br /> </b> Computational Neurophysiology </td> <td>Action potential dynamics: how cellular properties matter for nervous system function</td> <td></td> <td></td> </tr> <tr> <td>2021-09-28</td> <td> <b> Basti, Alireza<br /> </b> Systems Biology of Cancer </td> <td>Core-clock genes regulate proliferation and migration in colorectal cancer cells: a reciprocal interplay with MACC1</td> <td></td> <td></td> </tr> <tr> <td>2021-09-21</td> <td> <b> Astaburuaga, Rosario<br /> </b> Systems Biology of Molecular Networks </td> <td>Complement activation induces excessive T cell cytotoxicity in severe COVID-19</td> <td></td> <td></td> </tr> <tr> <td>2021-09-14</td> <td> <b> Yalcin, Müge<br /> </b> Systems Biology of Cancer </td> <td>The role of circadian clock phenotype in cellular pathways associated with cancer and neurodegeneration</td> <td></td> <td></td> </tr> <tr> <td>2021-09-07</td> <td> <b> Mohsen Raoufi<br /> </b> </td> <td>Speed-accuracy trade-off in spatial collective decision making</td> <td></td> <td></td> </tr> <tr> <td>2021-08-24</td> <td> <b> Burt, Phillipp<br /> </b> Systems Biology of Inflammation </td> <td>Data-driven modeling of T cell dynamics in acute and chronic inflammation</td> <td></td> <td></td> </tr> <tr> <td>2021-06-22</td> <td> <b> Contreras, Susana<br /> </b> Computational Neurophysiology </td> <td>Simplifying complicated neuronal models</td> <td></td> <td></td> </tr> <tr> <td>2021-06-15</td> <td> <b> Kuokkanen, Paula<br /> </b> Theoretical Neuroscience </td> <td>Predicting click-elicited single auditory unit contributions to EEG in the barn owl</td> <td></td> <td></td> </tr> <tr> <td>2021-06-08</td> <td> <b> Thurley, Kevin (PI)<br /> </b> Systems Biology of Inflammation </td> <td>Epigenetic auto-stabilization - evidence for a new network motif in the control of Th cell lineage identity.</td> <td></td> <td></td> </tr> <tr> <td>2021-06-01</td> <td> <b> Schieferstein, Natalie<br /> </b> </td> <td>Approximating transient dynamics of hippocampal ripple oscillations in an inhibitory network model</td> <td></td> <td></td> </tr> <tr> <td>2021-05-25</td> <td> <b> Poel, Winnie<br /> </b> Collective Information Processing </td> <td>TBA</td> <td></td> <td></td> </tr> <tr> <td>2021-05-18</td> <td> <b> Pfeiffer, Paul<br /> </b> Computational Neurophysiology </td> <td>Capacitance clamp - artificial capacitance in biological neurons</td> <td></td> <td></td> </tr> <tr> <td>2021-05-03</td> <td> <b> <a href="https://livermetabolism.com">König, Matthias (PI)</a><br /> </b> Systems Biology of Liver </td> <td>Physiologically based model of the indocyanine green based liver function tests</td> <td></td> <td></td> </tr> <tr> <td>2021-04-27</td> <td> <b> Steuer, Ralf (PI)<br /> </b> Metabolic Networks </td> <td>Eating the Sun: the path from single cell growth to productive ecosystems</td> <td></td> <td></td> </tr> <tr> <td>2021-04-20</td> <td> <b> Gomez, Luis<br /> </b> </td> <td>Information spread enhanced by criticality in high-responsive groups of fish</td> <td></td> <td></td> </tr> <tr> <td>2021-04-13</td> <td> <b> Weerdmeester, Liz<br /> </b> Computational Neurophysiology </td> <td>Energy vs robustness: a trade-off?</td> <td></td> <td></td> </tr> <tr> <td>2021-04-06</td> <td> <b> Schmal, Christoph (PI)<br /> </b> Computational Chronobiology </td> <td>An Integrative Omics Approach Reveals Post-transcriptional Mechanisms Underlying Circadian Temperature Compensation</td> <td></td> <td></td> </tr> <tr> <td>2021-03-30</td> <td> <b> Hammerstein, Peter (PI)<br /> </b> Evolution of Organismic Systems </td> <td>A striking 'pandemic'</td> <td></td> <td></td> </tr> <tr> <td>2021-03-16</td> <td> <b> Relógio, Angela (PI)<br /> </b> </td> <td>Circadian cancer metabolism.</td> <td></td> <td></td> </tr> <tr> <td>2021-03-09</td> <td> <b> Brunner, Patrick<br /> </b> Systems Biology of Inflammation </td> <td>Spatial modeling of inflammation</td> <td></td> <td></td> </tr> <tr> <td>2021-03-02</td> <td> <b> Zhao, Yinong<br /> </b> </td> <td>Self-organization of self-propelled particles with alignment -- Contagion process influenced by the spatial structure</td> <td></td> <td></td> </tr> <tr> <td>2021-02-23</td> <td> <b> <a href="http://www.sys-bio.net/">Bluethgen, Nils (PI)</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Signalling and the organisation of the epithelium and epithelial tumours. Lessons learned from single cell studies.</td> <td></td> <td></td> </tr> <tr> <td>2021-02-16</td> <td> <b> Peidli, Stefan<br /> </b> </td> <td>Temporal Single Cell Analysis with RNA velocity</td> <td></td> <td></td> </tr> <tr> <td>2021-02-09</td> <td> <b> Kwon, Gino<br /> </b> Systems Biology of Inflammation </td> <td>Dissecting the heterogeneity of single cell RNA expression.</td> <td></td> <td></td> </tr> <tr> <td>2021-02-02</td> <td> <b> Malhan, Deeksha<br /> </b> </td> <td>Bone healing: cellular and molecular insight</td> <td></td> <td></td> </tr> <tr> <td>2021-01-26</td> <td> <b> Del Olmo, Marta<br /> </b> Molecular and Cellular Evolution </td> <td>Nonlinear phenomena in models of the circadian clock</td> <td></td> <td></td> </tr> <tr> <td>2021-01-19</td> <td> <b> Fischer, Matthias<br /> </b> </td> <td>Maintaining and losing homoeostasis in hierarchical tissues</td> <td></td> <td></td> </tr> <tr> <td>2021-01-12</td> <td> <b> Grzegorzewski, Jan<br /> </b> </td> <td>PK-DB: A Pharmacokinetics Database for Individualized and Stratified Computational Modelling</td> <td></td> <td></td> </tr> <tr> <td>2020-12-15</td> <td> <b> Aboumanify, Ouda<br /> </b> </td> <td>Circadian genes and sports performance</td> <td></td> <td></td> </tr> <tr> <td>2020-12-08</td> <td> <b> <a href="https://itb.biologie.hu-berlin.de/wiki/members/klinger">Klinger, Bertram</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Speed2</td> <td></td> <td></td> </tr> <tr> <td>2020-12-01</td> <td> <b> Schleimer, Jan-Hendrik<br /> </b> Computational Neurophysiology </td> <td>Understanding excitability-switches in one dimension too much</td> <td></td> <td></td> </tr> <tr> <td>2020-11-24</td> <td> <b> <a href="wiki/members/grosstor">Dorel, Mathurin</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Reverse engineering signalling networks in neuroblastoma cell lines</td> <td></td> <td></td> </tr> <tr> <td>2020-11-17</td> <td> <b> Mahraz, Behbood<br /> </b> Computational Neurophysiology </td> <td>KCC2 cotransporter plays a role in balancing potassium in the extracellular space of excitatory synapses</td> <td></td> <td></td> </tr> <tr> <td>2020-11-10</td> <td> <b> Herzel, Hanspeter (PI)<br /> </b> Molecular and Cellular Evolution </td> <td>GC content of the genome</td> <td></td> <td></td> </tr> <tr> <td>2020-11-03</td> <td> <b> <a href="wiki/members/grosstor">Gross, Torsten</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Is robustness of MAPK signalling a result of integral feedback control?</td> <td></td> <td></td> </tr> <tr> <td>2020-10-27</td> <td> <b> Sell, Thomas<br /> </b> </td> <td>CyTOF</td> <td></td> <td></td> </tr> <tr> <td>2020-10-20</td> <td> <b> <a href="~hesse">Hesse, Janina</a><br /> </b> Computational Neurophysiology </td> <td>Circadian genes and sports performance: Prediction of optimal training times</td> <td></td> <td></td> </tr> <tr> <td>2020-06-24</td> <td> <b> Wilkins, Adams<br /> </b> ITB </td> <td>In domesticating animals, what is the first step: getting reduced reactive aggression or reduced fear?</td> <td></td> <td></td> </tr> <tr> <td>2020-06-17</td> <td> <b> <a href="http://itb.biologie.hu-berlin.de/~bharath/">Ananthasubramaniam, Bharath (PI)</a><br /> </b> Rhythmic Living Systems </td> <td>Amplitude Effects Allow Short Jet Lags and Large Seasonal Phase Shifts in Minimal Clock Models</td> <td></td> <td></td> </tr> <tr> <td>2020-06-09</td> <td> <b> Basti, Alireza<br /> </b> Systems Biology of Cancer </td> <td>The role of circadian clock in colorectal cancer: insights from in vitro and in vivo approaches</td> <td></td> <td></td> </tr> <tr> <td>2020-06-02</td> <td> <b> Yalcin, Müge<br /> </b> Systems Biology of Cancer </td> <td>Meta-analysis of circadian rhythms in an in vitro model of colorectal cancer</td> <td></td> <td></td> </tr> <tr> <td>2020-05-26</td> <td> <b> Astaburuaga, Rosario<br /> </b> Systems Biology of Molecular Networks </td> <td>Signaling pathways governing cell fate decisions upon radiation</td> <td></td> <td></td> </tr> <tr> <td>2020-05-19</td> <td> <b> Upadhyay, Abhishek<br /> </b> Molecular and Cellular Evolution </td> <td>Modelling multiple random phosphorylations in Neurospora clock is not rocket science!</td> <td></td> <td></td> </tr> <tr> <td>2020-05-23</td> <td> <b> Gustav, Geissler<br /> </b> Systems Biology of Inflammation </td> <td>Systems Biology of Inflammation</td> <td></td> <td></td> </tr> <tr> <td>2020-02-25</td> <td> <b> <a href="https://itb.biologie.hu-berlin.de/wiki/members/schuppner">Schuppner, Rike-Benjamin</a><br /> </b> System Administration </td> <td>ITB IT infrastructure & frequently asked questions</td> <td></td> <td></td> </tr> <tr> <td>2020-02-18</td> <td> <b> Burt, Phillipp<br /> </b> Systems Biology of Inflammation </td> <td>Data-driven modeling of T helper cell responses</td> <td></td> <td></td> </tr> <tr> <td>2020-02-11</td> <td> <b> D'Albis, Tiziano<br /> </b> Theoretical Neuroscience </td> <td>Recurrent amplification of grid-cell activity</td> <td></td> <td></td> </tr> <tr> <td>2020-02-04</td> <td> <b> Contreras, Susana<br /> </b> Computational Neurophysiology </td> <td>Effects of the extracellular (potassium) cocktail on neuronal activity</td> <td></td> <td></td> </tr> <tr> <td>2020-01-28</td> <td> <b> Kuokkanen, Paula<br /> </b> Theoretical Neuroscience </td> <td>From Single Cells to Far-Field Potentials in the Auditory Brainstem</td> <td></td> <td></td> </tr> <tr> <td>2020-01-21</td> <td> <b> Thurley, Kevin (PI)<br /> </b> Systems Biology of Inflammation </td> <td>Principles for circadian orchestration of metabolic pathways</td> <td></td> <td></td> </tr> <tr> <td>2020-01-14</td> <td> <b> Schieferstein, Natalie<br /> </b> </td> <td>Mechanisms of ripple oscillations and their role in memory consolidation</td> <td></td> <td></td> </tr> <tr> <td>2020-01-07</td> <td> <b> Rose, Pia<br /> </b> Computational Neurophysiology </td> <td>The influence of sodium channel parameters on the cardiac action potential</td> <td></td> <td></td> </tr> <tr> <td>2019-12-17</td> <td> <b> Poel, Winnie<br /> </b> Collective Information Processing </td> <td></td> <td></td> <td></td> </tr> <tr> <td>2019-12-10</td> <td> <b> Pfeiffer, Paul<br /> </b> Computational Neurophysiology </td> <td>Capacitance clamp - artificial capacitance in biological neurons</td> <td></td> <td></td> </tr> <tr> <td>2019-12-03</td> <td> <b> <a href="https://livermetabolism.com">König, Matthias (PI)</a><br /> </b> Systems Biology of Liver </td> <td>A reproducible and extensible model of whole-body glucose metabolism - A Progress report</td> <td></td> <td></td> </tr> <tr> <td>2019-11-26</td> <td> <b> Steuer, Ralf (PI)<br /> </b> Metabolic Networks </td> <td>None</td> <td></td> <td></td> </tr> <tr> <td>2019-11-19</td> <td> <b> Raghavendra Gadagkar (PI)<br /> </b> </td> <td>Direct Fitness Options for Workers in the Indian Paper Wasp Ropalidia marginata</td> <td></td> <td></td> </tr> <tr> <td>2019-11-12</td> <td> <b> Romanczuk, Pawel (PI)<br /> </b> Collective Information Processing </td> <td></td> <td></td> <td></td> </tr> <tr> <td>2019-11-05</td> <td> <b> Schmal, Christoph (PI)<br /> </b> Computational Chronobiology </td> <td>Circadian entrainment across seasons: lessons from a red bread mold</td> <td></td> <td></td> </tr> <tr> <td>2019-10-15</td> <td> <b> Reifenstein, Eric<br /> </b> Computational Neurophysiology </td> <td>The benefit of phase precession for sequence learning</td> <td></td> <td></td> </tr> <tr> <td>2019-10-08</td> <td> <b> Meisig, Johannes<br /> </b> Systems Biology of Molecular Networks </td> <td>Using Slam-seq to characterize RNA processing rates globally.</td> <td></td> <td></td> </tr> <tr> <td>2019-10-01</td> <td> <b> <a href="http://www.sys-bio.net/">Bluethgen, Nils (PI)</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Dissecting Colon Cancer, Cell By Cell</td> <td></td> <td></td> </tr> <tr> <td>2019-09-24</td> <td> <b> Relógio, Angela (PI)<br /> </b> </td> <td>A role for the circadian clock in metastasis: insights from a zebrafish model.</td> <td></td> <td></td> </tr> <tr> <td>2019-09-17</td> <td> <b> Li, Yin<br /> </b> Systems Biology of Cancer </td> <td>The bidirectional interplay between the circadian clock and the TGFβ/SMAD4 pathway modulates metastasis and drug response in pancreatic cancer.</td> <td></td> <td></td> </tr> <tr> <td>2019-09-10</td> <td> <b> Del Olmo, Marta<br /> </b> Molecular and Cellular Evolution </td> <td>Modelling Circadian Redox Oscillations</td> <td></td> <td></td> </tr> <tr> <td>2019-09-03</td> <td> <b> <a href="wiki/members/elathman">El-Athman, Rukeia</a><br /> </b> Systems Biology of Cancer </td> <td>A Landscape of Circadian and Ultradian Splicing Events in Mammalian Tissues</td> <td></td> <td></td> </tr> <tr> <td>2019-07-09</td> <td> <b> Grzegorzewski, Jan<br /> </b> </td> <td>A Pharmacokinetics Database for Individualized and Stratified Computational Modelling</td> <td></td> <td></td> </tr> <tr> <td>2019-07-02</td> <td> <b> <a href="https://itb.biologie.hu-berlin.de/wiki/members/klinger">Klinger, Bertram</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Mass-spec methods for phospho-protein detection</td> <td></td> <td></td> </tr> <tr> <td>2019-06-25</td> <td> <b> Mahraz, Behbood<br /> </b> Computational Neurophysiology </td> <td>Activity-Induced Changes in Ion Concentrations Switch Cellular Dynamics in Favor of the Brain's Rhythmic Activities (A Fast Slow Bifurcation Analysis)</td> <td></td> <td></td> </tr> <tr> <td>2019-06-18</td> <td> <b> Herzel, Hanspeter (PI)<br /> </b> Molecular and Cellular Evolution </td> <td>Nonlinear dynamics of the voice</td> <td></td> <td></td> </tr> <tr> <td>2019-06-04</td> <td> <b> <a href="wiki/members/grosstor">Gross, Torsten</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Robust network inference using response logic</td> <td></td> <td></td> </tr> <tr> <td>2019-05-28</td> <td> <b> Clara Jongen<br /> </b> Research on Complex Systems </td> <td>Context specific role of airports in global disease dynamics</td> <td></td> <td></td> </tr> <tr> <td>2019-05-21</td> <td> <b> <a href="https://livermetabolism.com">König, Matthias (PI)</a><br /> </b> Systems Biology of Liver </td> <td>Reproducible research</td> <td></td> <td></td> </tr> <tr> <td>2019-05-14</td> <td> <b> Sell, Thomas<br /> </b> </td> <td>Signalling cell by cell with mass cytometry</td> <td></td> <td></td> </tr> <tr> <td>2019-05-07</td> <td> <b> <a href="~benary">Benary, Manuela</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Precision oncology using big data – How to predict relevant targets and therapies?</td> <td></td> <td></td> </tr> <tr> <td>2019-04-30</td> <td> <b> Pett, Patrick<br /> </b> Molecular and Cellular Evolution </td> <td>Defense tissue specific circadian clock</td> <td></td> <td></td> </tr> <tr> <td>2019-04-23</td> <td> <b> Sojo, Victor<br /> </b> </td> <td>1+1=3: Membranes, proteins, and the intertwining branches of the Tree of Life</td> <td></td> <td></td> </tr> <tr> <td>2019-04-16</td> <td> <b> Lauterbach, Elvira & Winkelhöfer Karin<br /> </b> </td> <td>Security information and instructions</td> <td></td> <td></td> </tr> <tr> <td>2019-04-02</td> <td> <b> Schreiber, Susanne (PI)<br /> </b> Computational Neurophysiology </td> <td>Synchronization with a new type of spike</td> <td></td> <td></td> </tr> <tr> <td>2019-03-24</td> <td> <b> Carrillo-Bustamante, Paola<br /> </b> </td> <td>How can we understand the transmission and evolution of malaria? Insights from an in-silico individual-based model</td> <td></td> <td></td> </tr> <tr> <td>2019-03-12</td> <td> <b> <a href="http://itb.biologie.hu-berlin.de/~bharath/">Ananthasubramaniam, Bharath (PI)</a><br /> </b> Rhythmic Living Systems </td> <td>Ultradian rhythms in the transcriptome of Neurospora crassa</td> <td><a href="http://itb.biologie.hu-berlin.de/~bharath/" target="_blank">http://itb.biologie.hu-berlin.de/~bharath/</a></td> <td></td> </tr> <tr> <td>2019-03-05</td> <td> <b> Astaburuaga, Rosario<br /> </b> Systems Biology of Molecular Networks </td> <td>Mathematical modeling of lysosomal ion homeostasis</td> <td></td> <td></td> </tr> <tr> <td>2019-02-26</td> <td> <b> Uhlitz, Florian<br /> </b> Systems Biology of Molecular Networks </td> <td>Single Cell RNA-Seq of Colorectal Cancer Organoids</td> <td></td> <td></td> </tr> <tr> <td>2019-02-19</td> <td> <b> Basti, Alireza<br /> </b> Systems Biology of Cancer </td> <td>In vivo and in vitro investigation of the circadian clock in human colorectal cancer</td> <td></td> <td></td> </tr> <tr> <td>2019-02-12</td> <td> <b> Upadhyay, Abhishek<br /> </b> Molecular and Cellular Evolution </td> <td>A degradation switch enables rhythm in a Neurospora clock model</td> <td></td> <td></td> </tr> <tr> <td>2019-02-05</td> <td> <b> Klamser, Pascal<br /> </b> Collective Information Processing </td> <td>Uncommon Risk-Behavior Evolution Due to Size-Selective Harvesting in Zebrafish</td> <td></td> <td></td> </tr> <tr> <td>2019-01-29</td> <td> <b> <a href="https://itb.biologie.hu-berlin.de/wiki/members/schuppner">Schuppner, Rike-Benjamin</a><br /> </b> System Administration </td> <td>Frequently asked questions</td> <td><a href="https://itbgit.biologie.hu-berlin.de/schuppner/itb-infrastructure-2019/blob/master/ITB%20Meeting%202019.pdf" target="_blank">https://itbgit.biologie.hu-berlin.de/schuppner/itb-infrastructure-2019/blob/master/ITB%20Meeting%202019.pdf</a></td> <td></td> </tr> <tr> <td>2019-01-22</td> <td> <b> Faizi, Marjan<br /> </b> Metabolic Networks </td> <td>Modeling a self-adapting system of phototrophic growth</td> <td></td> <td></td> </tr> <tr> <td>2019-01-15</td> <td> <b> D'Albis, Tiziano<br /> </b> Theoretical Neuroscience </td> <td>The origin of grid-cell patterns</td> <td></td> <td></td> </tr> <tr> <td>2019-01-08</td> <td> <b> Schieferstein, Natalie<br /> </b> </td> <td>Mechanisms of phase precession in the hippocampal formation</td> <td></td> <td></td> </tr> <tr> <td>2018-12-11</td> <td> <b> Genov, Nikolai<br /> </b> Systems Biology of Cancer </td> <td>Time-dependent Isoform Expression Changes</td> <td></td> <td></td> </tr> <tr> <td>2018-12-04</td> <td> <b> Kuokkanen, Paula<br /> </b> Theoretical Neuroscience </td> <td>From single cells to extracellular field potentials and EEG</td> <td></td> <td></td> </tr> <tr> <td>2018-11-27</td> <td> <b> Burt, Phillipp<br /> </b> Systems Biology of Inflammation </td> <td>Response-time modeling of T helper cell differentiation</td> <td></td> <td></td> </tr> <tr> <td>2018-11-20</td> <td> <b> Thurley, Kevin (PI)<br /> </b> Systems Biology of Inflammation </td> <td>Modeling cell-cell communication dynamics in inflammatory responses</td> <td></td> <td></td> </tr> <tr> <td>2018-11-13</td> <td> <b> Contreras, Susana<br /> </b> Computational Neurophysiology </td> <td>An activity-induced transition in single-cell spiking dynamics</td> <td></td> <td></td> </tr> <tr> <td>2018-11-06</td> <td> <b> Rose, Pia<br /> </b> Computational Neurophysiology </td> <td>Neurobiology without neurons</td> <td></td> <td></td> </tr> <tr> <td>2018-10-30</td> <td> <b> Romanczuk, Pawel (PI)<br /> </b> Collective Information Processing </td> <td>Less is more - Limited attention facilitates collective migration in complex environments</td> <td></td> <td></td> </tr> <tr> <td>2018-10-23</td> <td> <b> Pfeiffer, Paul<br /> </b> Computational Neurophysiology </td> <td>Short term memory - Bistable neurons and reverberatory networks</td> <td></td> <td></td> </tr> <tr> <td>2018-10-16</td> <td> <b> <a href="https://livermetabolism.com">König, Matthias (PI)</a><br /> </b> Systems Biology of Liver </td> <td>Modelling liver function tests - LiMAx</td> <td></td> <td></td> </tr> <tr> <td>2018-10-09</td> <td> <b> Steuer, Ralf (PI)<br /> </b> Metabolic Networks </td> <td>Modelling Phototrophic Growth</td> <td></td> <td></td> </tr> <tr> <td>2018-10-02</td> <td> <b> Carlos Aguilar (PI)<br /> </b> </td> <td>Mapping the fungal web: Ecosystem functions to inspire human-made networks</td> <td></td> <td></td> </tr> <tr> <td>2018-09-18</td> <td> <b> Schmal, Christoph (PI)<br /> </b> Computational Chronobiology </td> <td>Dissociation of Intracellular Feedback Loops in the Mammalian Circadian Clock</td> <td></td> <td></td> </tr> <tr> <td>2018-09-11</td> <td> <b> Rydenfelt, Mattias<br /> </b> Systems Biology of Molecular Networks </td> <td>None</td> <td></td> <td></td> </tr> <tr> <td>2018-07-17</td> <td> <b> Hammerstein, Peter (PI)<br /> </b> Evolution of Organismic Systems </td> <td>Celebrating the end of the semester with a look at Australian outback adventures</td> <td></td> <td></td> </tr> <tr> <td>2018-07-10</td> <td> <b> Winkelhöfer, Karin<br /> </b> </td> <td>Berlin waste water management</td> <td></td> <td></td> </tr> <tr> <td>2018-07-03</td> <td> <b> Reifenstein, Eric<br /> </b> Computational Neurophysiology </td> <td>Neuronal mechanisms of sequence learning</td> <td></td> <td></td> </tr> <tr> <td>2018-06-26</td> <td> <b> Genov, Nikolai<br /> </b> Systems Biology of Cancer </td> <td></td> <td></td> <td></td> </tr> <tr> <td>2018-06-19</td> <td> <b> Evangelista, Roberta<br /> </b> Theoretical Neuroscience </td> <td>A 3-populations spiking model for the generation of hippocampal sharp wave-ripple oscillations</td> <td></td> <td></td> </tr> <tr> <td>2018-06-12</td> <td> <b> Meisig, Johannes<br /> </b> Systems Biology of Molecular Networks </td> <td>Reconstructing gene regulatory networks in stem cells</td> <td></td> <td></td> </tr> <tr> <td>2018-06-05</td> <td> <b> <a href="http://www.sys-bio.net/">Bluethgen, Nils (PI)</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Colon cancer - cell by cell</td> <td></td> <td></td> </tr> <tr> <td>2018-05-28</td> <td> <b> Li, Yin<br /> </b> Systems Biology of Cancer </td> <td>Characterization of circadian clock in mammalian cancer cells</td> <td></td> <td></td> </tr> <tr> <td>2018-05-21</td> <td> <b> Del Olmo, Marta<br /> </b> Molecular and Cellular Evolution </td> <td>Circadian redox system</td> <td></td> <td></td> </tr> <tr> <td>2018-05-15</td> <td> <b> <a href="wiki/members/elathman">El-Athman, Rukeia</a><br /> </b> Systems Biology of Cancer </td> <td>Analysis of the circadian splicosome</td> <td></td> <td></td> </tr> <tr> <td>2018-05-08</td> <td> <b> Grzegorzewski, Jan<br /> </b> </td> <td>Virus Classification by Pattern Recognition applied on Peptide-Virus Interactions</td> <td></td> <td></td> </tr> <tr> <td>2018-04-24</td> <td> <b> <a href="https://itb.biologie.hu-berlin.de/wiki/members/klinger">Klinger, Bertram</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Studying oncogenic effects of RAS</td> <td></td> <td></td> </tr> <tr> <td>2018-04-17</td> <td> <b> Holzbecher, André<br /> </b> Theoretical Neuroscience </td> <td>Interneuronal gap junctions increase the synchrony of hippocampal ripple oscillations</td> <td></td> <td></td> </tr> <tr> <td>2018-03-27</td> <td> <b> Relógio, Angela (PI)<br /> </b> </td> <td>A brief history of time</td> <td></td> <td></td> </tr> <tr> <td>2018-03-20</td> <td> <b> Herzel, Hanspeter (PI)<br /> </b> Molecular and Cellular Evolution </td> <td>The Choroid Plexus is an Important Circadian Clock Component</td> <td></td> <td></td> </tr> <tr> <td>2018-03-13</td> <td> <b> Schleimer, Jan-Hendrik<br /> </b> Computational Neurophysiology </td> <td>It's: Monty Python's Flying Circuit</td> <td><a href="https://github.com/matthiaskoenig/itbmeeting/raw/master/slides/2018-03-13_schleimer.pdf" target="_blank">https://github.com/matthiaskoenig/itbmeeting/raw/master/slides/2018-03-13_schleimer.pdf</a></td> <td></td> </tr> <tr> <td>2018-03-06</td> <td> <b> <a href="wiki/members/grosstor">Gross, Torsten</a><br /> </b> Systems Biology of Molecular Networks </td> <td>A signalling network model predicts differential drug response of PIK3 mutants in a colon cancer cell line.</td> <td><a href="/wiki/_media/itbmeeting/wiki/members/grosstor" class="media mediafile mf_pdf" title="itbmeeting:wiki/members/grosstor">wiki/members/grosstor</a></td> <td></td> </tr> <tr> <td>2018-02-27</td> <td> <b> <a href="https://livermetabolism.com">König, Matthias (PI)</a><br /> </b> Systems Biology of Liver </td> <td>A Quick Introduction to Version Control with Git</td> <td></td> <td></td> </tr> <tr> <td>2018-02-20</td> <td> <b> Clara Jongen<br /> </b> Research on Complex Systems </td> <td>Defining the scope: A context specific approach to identifying key airports during a pandemic.</td> <td></td> <td></td> </tr> <tr> <td>2018-02-13</td> <td> <b> Sell, Thomas<br /> </b> </td> <td>What is mass cytometry?</td> <td></td> <td></td> </tr> <tr> <td>2018-01-30</td> <td> <b> <a href="wiki/members/witzel">Witzel, Franziska</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Integral feedback control in Erk1/2 signalling</td> <td><a href="/wiki/_media/itbmeeting/2018-01-30_witzel.pdf" class="media mediafile mf_pdf" title="itbmeeting:2018-01-30_witzel.pdf">2018-01-30_witzel.pdf</a></td> <td></td> </tr> <tr> <td>2018-01-23</td> <td> <b> Wilkins, Adams<br /> </b> ITB </td> <td></td> <td></td> <td></td> </tr> <tr> <td>2018-01-16</td> <td> <b> Upadhyay, Abhishek<br /> </b> Molecular and Cellular Evolution </td> <td>Mathematical modeling of circadian clock in Neurospora crassa</td> <td></td> <td></td> </tr> <tr> <td>2018-01-09</td> <td> <b> Obermayer, Benedikt<br /> </b> Bioinformatics Core Unit </td> <td>Global characterization of post-transcriptional gene regulation at the onset of neuronal differentiation</td> <td></td> <td></td> </tr> <tr> <td>2017-12-12</td> <td> <b> Uhlitz, Florian<br /> </b> Systems Biology of Molecular Networks </td> <td>Single cell RNAseq of colorectal cancer</td> <td></td> <td></td> </tr> <tr> <td>2017-12-05</td> <td> <b> Basti, Alireza<br /> </b> Systems Biology of Cancer </td> <td>Gene editing via CRISPR/CAS9</td> <td></td> <td></td> </tr> <tr> <td>2017-11-28</td> <td> <b> Ünal, Evrim Besray<br /> </b> Systems Biology of Molecular Networks </td> <td>Systems level expression correlation of Ras-like GTPase regulators and dysregulation in cancer.</td> <td></td> <td></td> </tr> <tr> <td>2017-11-21</td> <td> <b> <a href="http://itb.biologie.hu-berlin.de/~bharath/">Ananthasubramaniam, Bharath (PI)</a><br /> </b> Rhythmic Living Systems </td> <td>BodyTime: A new diagnostic tool to assess the internal clock</td> <td></td> <td></td> </tr> <tr> <td>2017-11-14</td> <td> <b> <a href="https://itb.biologie.hu-berlin.de/wiki/members/schuppner">Schuppner, Rike-Benjamin</a><br /> </b> System Administration </td> <td>Technical Depth - Computers at the ITB</td> <td><a href="http://docs.itb.pri/TechnicalDepth/assets/player/KeynoteDHTMLPlayer.html#1" target="_blank">http://docs.itb.pri/TechnicalDepth/assets/player/KeynoteDHTMLPlayer.html#1</a></td> <td></td> </tr> <tr> <td>2017-11-07</td> <td> <b> Klamser, Pascal<br /> </b> Collective Information Processing </td> <td>Collective Performance in Presence of a Predator: An inhomogeneous, local field.</td> <td></td> <td></td> </tr> <tr> <td>2017-10-24</td> <td> <b> Faizi, Marjan<br /> </b> Metabolic Networks </td> <td>Cyanobacterial growth with intrinsic feedback</td> <td></td> <td></td> </tr> <tr> <td>2017-10-17</td> <td> <b> Schieferstein, Natalie<br /> </b> </td> <td>Mechanisms of phase precession in the hippocampal formation.</td> <td></td> <td></td> </tr> <tr> <td>2017-10-10</td> <td> <b> D'Albis, Tiziano<br /> </b> Theoretical Neuroscience </td> <td>The origin of grid-cell patterns.</td> <td></td> <td></td> </tr> <tr> <td>2017-09-26</td> <td> <b> Kuokkanen, Paula<br /> </b> Theoretical Neuroscience </td> <td>Decomposing the neurophonic in the NL of the Barn Owl.</td> <td></td> <td></td> </tr> <tr> <td>2017-09-19</td> <td> <b> Contreras, Susana<br /> </b> Computational Neurophysiology </td> <td>The wonderlust gene</td> <td></td> <td></td> </tr> <tr> <td>2017-09-05</td> <td> <b> Rose, Pia<br /> </b> Computational Neurophysiology </td> <td>The influence of temperature on neuronal processing</td> <td></td> <td></td> </tr> <tr> <td>2017-07-18</td> <td> <b> Pfeiffer, Paul<br /> </b> Computational Neurophysiology </td> <td>Test-driven development</td> <td></td> <td></td> </tr> <tr> <td>2017-07-11</td> <td> <b> <a href="https://livermetabolism.com">König, Matthias (PI)</a><br /> </b> Systems Biology of Liver </td> <td>Computational modeling of liver function tests: Why you need more coffee when you smoke</td> <td></td> <td></td> </tr> <tr> <td>2017-07-04</td> <td> <b> Romanczuk, Pawel (PI)<br /> </b> Collective Information Processing </td> <td>Collective Information Processing: How critical is it to be critical?</td> <td></td> <td></td> </tr> <tr> <td>2017-06-27</td> <td> <b> Karin Winklhöfer und Elvira Lauterbach<br /> </b> </td> <td>ITB Symposium Organization Meeting</td> <td></td> <td></td> </tr> <tr> <td>2017-06-20</td> <td> <b> Steuer, Ralf (PI)<br /> </b> Metabolic Networks </td> <td>The protein economy of growth: How to multiply yourself in seven steps.</td> <td></td> <td></td> </tr> <tr> <td>2017-06-13</td> <td> <b> Schreiber, Susanne (PI)<br /> </b> Computational Neurophysiology </td> <td>Cold-induced silencing of neuronal activity</td> <td></td> <td></td> </tr> <tr> <td>2017-06-06</td> <td> <b> Schmal, Christoph (PI)<br /> </b> Computational Chronobiology </td> <td>Mammalian circadian clock - Network of coupled oscillators</td> <td></td> <td></td> </tr> <tr> <td>2017-05-30</td> <td> <b> Rydenfelt, Mattias<br /> </b> Systems Biology of Molecular Networks </td> <td>Drug sensitivity in cancer cell lines</td> <td></td> <td></td> </tr> <tr> <td>2017-05-23</td> <td> <b> Remme, Michiel<br /> </b> Computational Neurophysiology and Neuroscience </td> <td>The energetic cost of the brain</td> <td></td> <td></td> </tr> <tr> <td>2017-05-16</td> <td> <b> Schleimer, Jan-Hendrik<br /> </b> Computational Neurophysiology </td> <td></td> <td></td> <td></td> </tr> <tr> <td>2017-05-09</td> <td> <b> Abreu, Mónica<br /> </b> Systems Biology of Cancer </td> <td>Circadian analysis of the immune system</td> <td></td> <td></td> </tr> <tr> <td>2017-05-02</td> <td> <b> Reifenstein, Eric<br /> </b> Computational Neurophysiology </td> <td>Sequence learning in rats and humans</td> <td></td> <td></td> </tr> <tr> <td>2017-04-25</td> <td> <b> Michalikova, Martina<br /> </b> Theoretical Neuroscience </td> <td>Post-journal utopia & how to move there faster.</td> <td></td> <td></td> </tr> <tr> <td>2017-04-04</td> <td> <b> Genov, Nikolai<br /> </b> Systems Biology of Cancer </td> <td>Ultradian rhythms are evolutionary more conserved and play key roles in vital cellular functions.</td> <td></td> <td></td> </tr> <tr> <td>2017-03-28</td> <td> <b> McColgan, Thomas<br /> </b> Theoretical Neuroscience </td> <td>Report of the GPU modeling retreat</td> <td></td> <td></td> </tr> <tr> <td>2017-03-21</td> <td> <b> Meisig, Johannes<br /> </b> Systems Biology of Molecular Networks </td> <td>Modeling gene expression in spontaneous and perturbed differentiation</td> <td></td> <td></td> </tr> <tr> <td>2017-03-14</td> <td> <b> Evangelista, Roberta<br /> </b> Theoretical Neuroscience </td> <td>Bistable activation of CA3 interneurons can explain the generation of sharp wave-ripple oscillations</td> <td></td> <td></td> </tr> <tr> <td>2017-03-07</td> <td> <b> Kremkow, Jens<br /> </b> Theoretical Neuroscience </td> <td>What causes a cortical action potential, in vivo?</td> <td></td> <td></td> </tr> <tr> <td>2017-02-28</td> <td> <b> <a href="wiki/members/elathman">El-Athman, Rukeia</a><br /> </b> Systems Biology of Cancer </td> <td>Molecular Modelling of the Oligomeric Pore of the Tight Junction Protein Claudin-10b</td> <td></td> <td></td> </tr> <tr> <td>2017-02-14</td> <td> <b> Knoop, Henning<br /> </b> Metabolic Networks </td> <td>Metabolic modeling of cyanobacteria</td> <td></td> <td></td> </tr> <tr> <td>2017-02-07</td> <td> <b> <a href="https://itb.biologie.hu-berlin.de/wiki/members/klinger">Klinger, Bertram</a><br /> </b> Systems Biology of Molecular Networks </td> <td>The coffee ring effect</td> <td></td> <td></td> </tr> <tr> <td>2017-01-31</td> <td> <b> Holzbecher, André<br /> </b> Theoretical Neuroscience </td> <td>Memory - how we remember places, and why electrical synapses might play a role in that</td> <td></td> <td></td> </tr> <tr> <td>2017-01-17</td> <td> <b> Herzel, Hanspeter (PI)<br /> </b> Molecular and Cellular Evolution </td> <td>Modeling rhythms in cells, tissues, and organisms</td> <td><a href="/wiki/_media/itbmeeting/2017-01-17_herzel.pdf" class="media mediafile mf_pdf" title="itbmeeting:2017-01-17_herzel.pdf">2017-01-17_herzel.pdf</a></td> <td></td> </tr> <tr> <td>2017-01-10</td> <td> <b> <a href="~hesse">Hesse, Janina</a><br /> </b> Computational Neurophysiology </td> <td>Trace your favorite drawings - getting around copy rights with inkscape</td> <td></td> <td></td> </tr> <tr> <td>2016-12-13</td> <td> <b> <a href="wiki/members/grosstor">Gross, Torsten</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Finding patterns in perturbation data that reveal an underlying network</td> <td></td> <td></td> </tr> <tr> <td>2016-11-29</td> <td> <b> <a href="wiki/members/fuhr/">Fuhr, Luise</a><br /> </b> Systems Biology of Cancer </td> <td>Clock-genes and mitochondrial respiratory activity: Evidence of a reciprocal interplay.</td> <td></td> <td></td> </tr> <tr> <td>2016-11-29</td> <td> <b> <a href="http://www.sys-bio.net/">Bluethgen, Nils (PI)</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Noise in cancer</td> <td></td> <td></td> </tr> <tr> <td>2016-11-22</td> <td> <b> Baranov, Olga<br /> </b> Research on Complex Systems </td> <td>Real world networks</td> <td></td> <td></td> </tr> <tr> <td>2016-11-08</td> <td> <b> <a href="wiki/members/donoso">Donoso, José R.</a><br /> </b> Theoretical Neuroscience </td> <td>Microvision in cyanobacteria (<a href="http://dx.doi.org/10.7554/eLife.12620">http://dx.doi.org/10.7554/eLife.12620</a>)</td> <td><a href="/wiki/_media/itbmeeting/2016-11-08_donoso.pdf" class="media mediafile mf_pdf" title="itbmeeting:2016-11-08_donoso.pdf">2016-11-08_donoso.pdf</a></td> <td></td> </tr> <tr> <td>2016-11-01</td> <td> <b> <a href="~benary">Benary, Manuela</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Project proposal</td> <td></td> <td></td> </tr> <tr> <td>2016-10-25</td> <td> <b> Maier, Benjamin<br /> </b> </td> <td>Flockworks: A class of dynamic network models for face-to-face interactions</td> <td></td> <td></td> </tr> <tr> <td>2016-10-18</td> <td> <b> <a href="wiki/members/witzel">Witzel, Franziska</a><br /> </b> Systems Biology of Molecular Networks </td> <td>Oncogene-induced Senescence</td> <td><a href="/wiki/_media/itbmeeting/2016-10-18_witzel.pdf" class="media mediafile mf_pdf" title="itbmeeting:2016-10-18_witzel.pdf">2016-10-18_witzel.pdf</a></td> <td></td> </tr> <tr> <td>2016-10-11</td> <td> <b> <a href="~bordyugov">Bordyugov, Grischa</a><br /> </b> Molecular and Cellular Evolution </td> <td>Programming with closures for fun and profit</td> <td><a href="/wiki/_media/itbmeeting/2016-10-11_bordyugov.pdf" class="media mediafile mf_pdf" title="itbmeeting:2016-10-11_bordyugov.pdf">2016-10-11_bordyugov.pdf</a></td> <td></td> </tr> </tbody> </table> <h2 id="organisation">Organisation</h2> <p> If it is your turn at the ITB meeting, please prepare a short talk (15 min + 5 min discussion) that is related to your research (your own project or a very interesting finding of other groups). Please make sure that the video-projector and laptop are in place at 14:00. If you are scheduled for House 4 - the projector is already installed in the seminar room. If you are unable to give the talk at the date indicated, please find a replacement. </p> <p> Titles for the talks should be sent until Monday 12PM to: <a href="mailto:bharath.ananthasubramaniam@hu-berlin.de">Bharath Ananthasubramaniam</a> </p> <p> Thank you for your effort to keep ITB a vital and exciting meeting point for theoretical and experimental biologists! </p> <h2 id="alumni">Meeting Alumni</h2> <table class="table"> <thead> <tr> <th>Name</th> <th>Group</th> </tr> </thead> <tbody> <tr> <td><b> Basti, Alireza </b></td> <td>Systems Biology of Cancer</td> </tr> <tr> <td><b> Hesse, Janina </b></td> <td>Systems Biology of Cancer</td> </tr> <tr> <td><b> Poel, Winnie </b></td> <td>Collective Information Processing</td> </tr> <tr> <td><b> Kwon, Gino </b></td> <td>Systems Biology of Inflammation</td> </tr> <tr> <td><b> Burt, Phillipp </b></td> <td>Systems Biology of Inflammation</td> </tr> <tr> <td><b> Brunner, Patrick </b></td> <td>Systems Biology of Inflammation</td> </tr> <tr> <td><b> Thurley, Kevin (PI) </b></td> <td>Systems Biology of Inflammation</td> </tr> <tr> <td><b> Contreras, Susana </b></td> <td>Computational Neurophysiology</td> </tr> <tr> <td><b> <a href="wiki/members/westerm">Westermark, Pål (PI)</a> </b></td> <td>Systems Biology of Aging and the Circadian</td> </tr> <tr> <td><b> <a href="~wilmes">Wilmes, Katharina</a> </b></td> <td>Computational Neurophysiology</td> </tr> <tr> <td><b> <a href="wiki/members/frederic">Roemschied, Frederic</a> </b></td> <td>Computational Neurophysiology</td> </tr> <tr> <td><b> <a href="wiki/members/nikolay">Chenkov, Nikolay</a> </b></td> <td>Theoretical Neuroscience</td> </tr> <tr> <td><b> Westermark, Stefanie </b></td> <td>Metabolic Networks</td> </tr> <tr> <td><b> Lehmann, Robert </b></td> <td>Celldeg.com</td> </tr> <tr> <td><b> Ruegen, Marco </b></td> <td>Metabolic Networks</td> </tr> <tr> <td><b> Lueck, Sarah </b></td> <td>Systems Biology of Aging and the Circadian Clock</td> </tr> <tr> <td><b> Knoop, Henning </b></td> <td>Metabolic Networks</td> </tr> <tr> <td><b> Thaben, Paul </b></td> <td>Systems Biology of Aging and the Circadian Clock</td> </tr> <tr> <td><b> <a href="~bordyugov">Bordyugov, Grischa</a> </b></td> <td>Molecular and Cellular Evolution</td> </tr> <tr> <td><b> Zug, Roman </b></td> <td>Evolution of Organismic Systems</td> </tr> <tr> <td><b> McColgan, Thomas </b></td> <td>Theoretical Neuroscience</td> </tr> <tr> <td><b> Michalikova, Martina </b></td> <td>Theoretical Neuroscience</td> </tr> <tr> <td><b> <a href="wiki/members/fuhr/">Fuhr, Luise</a> </b></td> <td>Systems Biology of Cancer</td> </tr> <tr> <td><b> <a href="wiki/members/donoso">Donoso, José R.</a> </b></td> <td>Theoretical Neuroscience</td> </tr> <tr> <td><b> <a href="~hesse">Hesse, Janina</a> </b></td> <td>Computational Neurophysiology</td> </tr> <tr> <td><b> Ünal, Evrim Besray </b></td> <td>Systems Biology of Molecular Networks</td> </tr> <tr> <td><b> Kremkow, Jens </b></td> <td>Theoretical Neuroscience</td> </tr> <tr> <td><b> Abreu, Mónica </b></td> <td>Systems Biology of Cancer</td> </tr> <tr> <td><b> Remme, Michiel </b></td> <td>Computational Neurophysiology and Neuroscience</td> </tr> <tr> <td><b> Holzbecher, André </b></td> <td>Theoretical Neuroscience</td> </tr> <tr> <td><b> <a href="wiki/members/witzel">Witzel, Franziska</a> </b></td> <td>Systems Biology of Molecular Networks</td> </tr> <tr> <td><b> Pett, Patrick </b></td> <td>Molecular and Cellular Evolution</td> </tr> <tr> <td><b> Baranov, Olga </b></td> <td>Research on Complex Systems</td> </tr> <tr> <td><b> Clara Jongen </b></td> <td>Research on Complex Systems</td> </tr> <tr> <td><b> Rydenfelt, Mattias </b></td> <td>Systems Biology of Molecular Networks</td> </tr> <tr> <td><b> Evangelista, Roberta </b></td> <td>Theoretical Neuroscience</td> </tr> <tr> <td><b> Genov, Nikolai </b></td> <td>Systems Biology of Cancer</td> </tr> <tr> <td><b> <a href="wiki/members/elathman">El-Athman, Rukeia</a> </b></td> <td>Systems Biology of Cancer</td> </tr> <tr> <td><b> Li, Yin </b></td> <td>Systems Biology of Cancer</td> </tr> <tr> <td><b> Faizi, Marjan </b></td> <td>Metabolic Networks</td> </tr> <tr> <td><b> Uhlitz, Florian </b></td> <td>Systems Biology of Molecular Networks</td> </tr> <tr> <td><b> <a href="~benary">Benary, Manuela</a> </b></td> <td>Systems Biology of Molecular Networks</td> </tr> <tr> <td><b> Rose, Pia </b></td> <td>Computational Neurophysiology</td> </tr> <tr> <td><b> Reifenstein, Eric </b></td> <td>Computational Neurophysiology</td> </tr> <tr> <td><b> D'Albis, Tiziano </b></td> <td>Theoretical Neuroscience</td> </tr> <tr> <td><b> Meisig, Johannes </b></td> <td>Systems Biology of Molecular Networks</td> </tr> <tr> <td><b> Klamser, Pascal </b></td> <td>Collective Information Processing</td> </tr> <tr> <td><b> Borek, Zuzanna </b></td> <td>Systems Biology of Inflammation</td> </tr> <tr> <td><b> Gustav, Geissler </b></td> <td>Systems Biology of Inflammation</td> </tr> <tr> <td><b> Upadhyay, Abhishek </b></td> <td>Molecular and Cellular Evolution</td> </tr> <tr> <td><b> <a href="wiki/members/grosstor">Dorel, Mathurin</a> </b></td> <td>Systems Biology of Molecular Networks</td> </tr> <tr> <td><b> <a href="wiki/members/grosstor">Gross, Torsten</a> </b></td> <td>Systems Biology of Molecular Networks</td> </tr> </tbody> </table> </html> Log In