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members:steuer:publicationssteuer [2015/03/13 16:31] – steuermembers:steuer:publicationssteuer [2016/09/21 09:26] (current) – steuer
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 ==== Metabolic Network Analysis − Publications ==== ==== Metabolic Network Analysis − Publications ====
  
-== Publications 2015 ==+**Publications 2016** 
 + 
 +[47] Zavřel T, Červený J, Knoop H, Steuer R (2016) **[[http://www.ncbi.nlm.nih.gov/pubmed/27420605|Optimizing cyanobacterial product synthesis: Meeting the challenges.]]**.  
 +Bioengineered. 2016 Jul 15:1-7.  
 + 
 +[46] Zavřel T, Knoop H, Steuer R, Jones PR, Červený J, Trtílek M. (2016) **[[http://www.ncbi.nlm.nih.gov/pubmed/ 26708481|A quantitative evaluation of ethylene production in the recombinant cyanobacterium Synechocystis sp. PCC 6803 harboring the ethylene-forming enzyme by membrane inlet mass spectrometry.]]**.  
 +Bioresour Technol. 202:142-51. doi: 10.1016/j.biortech.2015.11.062. 
 + 
 + 
 +**Publications 2015** 
 + 
 +[45] Muller S, Regensburger G, Steuer R.  (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/26614660|Resource allocation in metabolic networks: kinetic optimization and approximations by FBA.]]**.  
 +Biochem Soc Trans. 2015 Dec 1;43(6):1195-200. doi: 10.1042/BST20150156. Review. 
 + 
 +[44] Ruegen M, Bockmayr A, Steuer R.  (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/26496972|Elucidating temporal resource allocation and diurnal dynamics in phototrophic metabolism using conditional FBA]]**.  
 +Sci Rep. 2015 Oct 26;5:15247. doi: 10.1038/srep15247. 
 + 
 +[43] Erdrich P, Steuer R, Klamt S. (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/26286864|An algorithm for the reduction of genome-scale metabolic network models to meaningful core models.]]**.  
 +BMC Syst Biol. 2015 Aug 19;9:48. doi: 10.1186/s12918-015-0191-x. 
 + 
 +[42] Knoop H, Steuer R.  (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/25941672|A computational analysis of stoichiometric constraints and trade-offs in cyanobacterial biofuel production.]]**.  
 +Front Bioeng Biotechnol. 2015 Apr 20;3:47. doi: 10.3389/fbioe.2015.00047. eCollection 2015.
  
 [41] Klemke F, Baier A, Knoop H, Kern R, Jablonsky J, Beyer G, Volkmer T, Steuer R, Lockau W, Hagemann M. (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/25701735|Identification of the light-independent phosphoserine pathway as additional source for serine in the cyanobacterium Synechocystis sp. PCC 6803]]**.  [41] Klemke F, Baier A, Knoop H, Kern R, Jablonsky J, Beyer G, Volkmer T, Steuer R, Lockau W, Hagemann M. (2015) **[[http://www.ncbi.nlm.nih.gov/pubmed/25701735|Identification of the light-independent phosphoserine pathway as additional source for serine in the cyanobacterium Synechocystis sp. PCC 6803]]**. 
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-== Publications 2014 ==+**Publications 2014** 
 [40] Murabito E, Verma M, Bekker M, Bellomo D, Westerhoff HV, Teusink B, Steuer R. (2014)  [40] Murabito E, Verma M, Bekker M, Bellomo D, Westerhoff HV, Teusink B, Steuer R. (2014) 
 **[[http://www.ncbi.nlm.nih.gov/pubmed/25268481|Monte-Carlo modeling of the central carbon metabolism of Lactococcus lactis: insights into metabolic regulation]]**. **[[http://www.ncbi.nlm.nih.gov/pubmed/25268481|Monte-Carlo modeling of the central carbon metabolism of Lactococcus lactis: insights into metabolic regulation]]**.
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 Biosystems. 117:68-76. doi: 10.1016/j.biosystems.2013.12.006.  Biosystems. 117:68-76. doi: 10.1016/j.biosystems.2013.12.006. 
  
-== Publications 2013 ==+**Publications 2013**
  
 [36] H. Knoop, M. Gruendel, Y. Zilliges, R. Lehmann, S. Hoffmann, W. Lockau, R. Steuer. (2013) **[[http://www.ncbi.nlm.nih.gov/pubmed/23843751|Flux Balance Analysis of Cyanobacterial Metabolism: The metabolic network of Synechocystis sp. PCC 6803.]]** PLoS Comput Biol 9(6): e1003081. doi:10.1371/journal.pcbi.1003081 [36] H. Knoop, M. Gruendel, Y. Zilliges, R. Lehmann, S. Hoffmann, W. Lockau, R. Steuer. (2013) **[[http://www.ncbi.nlm.nih.gov/pubmed/23843751|Flux Balance Analysis of Cyanobacterial Metabolism: The metabolic network of Synechocystis sp. PCC 6803.]]** PLoS Comput Biol 9(6): e1003081. doi:10.1371/journal.pcbi.1003081
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 BMC Bioinformatics 14:133. doi: 10.1186/1471-2105-14-133.  BMC Bioinformatics 14:133. doi: 10.1186/1471-2105-14-133. 
  
-=== Publications 2012 ===+**Publications 2012**
  
 [34] Kämäräinen J, Knoop H, Stanford NJ, Guerrero F, Akhtar MK, Aro EM, Steuer R, Jones PR. (2012)  [34] Kämäräinen J, Knoop H, Stanford NJ, Guerrero F, Akhtar MK, Aro EM, Steuer R, Jones PR. (2012) 
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 BMC Genomics. 13(1):56. BMC Genomics. 13(1):56.
  
-== Publications 2011 ==+**Publications 2011**
  
 [31] Steuer R, Waldherr S, Sourjik V, Kollmann M (2011) [31] Steuer R, Waldherr S, Sourjik V, Kollmann M (2011)
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 Guaranteed and Randomized Methods for Stability Analysis of Uncertain Metabolic Networks. Lecture Notes in Control and Information Sciences, Volume 407, 297-307 Guaranteed and Randomized Methods for Stability Analysis of Uncertain Metabolic Networks. Lecture Notes in Control and Information Sciences, Volume 407, 297-307
  
-== Publications 2010 == +**Publications 2010**
  
  
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 Physica D Vol. 239, Issue 18, pp. 1798-1817  Physica D Vol. 239, Issue 18, pp. 1798-1817 
  
-== Publications 2009 ==+**Publications 2009**
  
 [25] R. Steuer and B. H. Junker (2009) [25] R. Steuer and B. H. Junker (2009)
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 [[http://www.ncbi.nlm.nih.gov/pubmed/19143602|SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation.]] Biochem Soc Trans. 37(Pt 1):58-64  [[http://www.ncbi.nlm.nih.gov/pubmed/19143602|SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation.]] Biochem Soc Trans. 37(Pt 1):58-64 
  
-== Publications 2008 ==+**Publications 2008**
  
 [23] J. Schmiedel and R. Steuer (2008) [23] J. Schmiedel and R. Steuer (2008)
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 Computation and Visualization of Bifurcation Surfaces  Intern. J. of Bifurcation and Chaos (IJBC), Vol. 18, No. 8, pp. 2191-2206  Computation and Visualization of Bifurcation Surfaces  Intern. J. of Bifurcation and Chaos (IJBC), Vol. 18, No. 8, pp. 2191-2206 
  
-== Publications 2007 ==+**Publications 2007**
  
 [20] Grimbs S, Selbig J, Bulik S, Holzhütter HG, and Steuer R (2007) [20] Grimbs S, Selbig J, Bulik S, Holzhütter HG, and Steuer R (2007)
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 A gentle guide to the analysis of metabolomic data.  Methods Mol Biol. 358:105-26.   A gentle guide to the analysis of metabolomic data.  Methods Mol Biol. 358:105-26.  
  
-== Publications 2006 ==+**Publications 2006**
  
 [16] Steuer R, Gross T, Selbig J, Blasius B. (2006) [16] Steuer R, Gross T, Selbig J, Blasius B. (2006)
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 On the analysis and interpretation of correlations in metabolomic data. Brief Bioinform. 7(2):151-8.  On the analysis and interpretation of correlations in metabolomic data. Brief Bioinform. 7(2):151-8. 
  
-== Publications 2005  ==+**Publications 2005**
  
 [12] W. Weckwerth and R. Steuer (2005) [12] W. Weckwerth and R. Steuer (2005)
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 In: Metabolome Analyses: Strategies for Systems Biology. S. Vaidyanathan (Editor), G. G. Harrigan (Editor), R. Goodacre (Editor). Chapter 15, pp. 265-290. Springer; 1 edition  In: Metabolome Analyses: Strategies for Systems Biology. S. Vaidyanathan (Editor), G. G. Harrigan (Editor), R. Goodacre (Editor). Chapter 15, pp. 265-290. Springer; 1 edition 
  
-== Publications 2004 ==+**Publications 2004**
  
 [11] Ralf Steuer (2004) [11] Ralf Steuer (2004)
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 Entropy and complexity analysis of intracranially recorded EEG. International Journal of Bifurcation and Chaos, Vol. 14, No. 2, pp. 815-823  Entropy and complexity analysis of intracranially recorded EEG. International Journal of Bifurcation and Chaos, Vol. 14, No. 2, pp. 815-823 
  
-== Publications 2003 ==+**Publications 2003**
  
 [7] R. Steuer, J. Kurths, O. Fiehn and W. Weckwerth (2003) [7] R. Steuer, J. Kurths, O. Fiehn and W. Weckwerth (2003)
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 Interpreting correlations in metabolomic networks. Biochemical Society Transactions, Vol. 31 (6), 1476-1478   Interpreting correlations in metabolomic networks. Biochemical Society Transactions, Vol. 31 (6), 1476-1478  
  
-== Publications 2002 ==+**Publications 2002**
  
 [4] R. Steuer, J. Kurths, C. O. Daub, J. Weise and J. Selbig (2002) [4] R. Steuer, J. Kurths, C. O. Daub, J. Weise and J. Selbig (2002)
 The Mutual Information: Detecting and evaluating dependencies between variables. Bioinformatics, Vol. 18 (Suppl. 2), S231-S240  The Mutual Information: Detecting and evaluating dependencies between variables. Bioinformatics, Vol. 18 (Suppl. 2), S231-S240 
  
-== Publications 2001 ==+**Publications 2001**
  
 [3] R. Steuer, W. Ebeling, D. F. Russell, S. Bahar, A. Neiman and F. Moss (2001) [3] R. Steuer, W. Ebeling, D. F. Russell, S. Bahar, A. Neiman and F. Moss (2001)
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-=== In Revision ===+