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publications:start [2016/10/11 20:04]
nils
publications:start [2018/12/28 13:29] (current)
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-====== Publications ====== 
- 
 //Note that this publication list is automatically updated and therefore //Note that this publication list is automatically updated and therefore
 may be incomplete or could contain papers which are not by ITB may be incomplete or could contain papers which are not by ITB
 authors. //  authors. // 
 +
 +=== 2018 ===
 +
 +Leiron Ferrarese, Jean-Sébastien Jouhanneau, Michiel W H Remme, Jens Kremkow, Gergely Katona, Balázs Rózsa, Susanne Schreiber, James F A Poulet, 2018, Dendrite-Specific Amplification of Weak Synaptic Input during Network Activity In Vivo. Cell Rep, 24,  3455-3465.e5  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30257207%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.celrep.2018.08.088|(full text)]] 
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 +Evert Bosdriesz, Anirudh Prahallad, Bertram Klinger, Anja Sieber, Astrid Bosma, René Bernards, Nils Blüthgen, Lodewyk F A Wessels, 2018, Comparative Network Reconstruction using mixed integer programming. Bioinformatics, 34,  i997-i1004  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30423075%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1093/bioinformatics/bty616|(full text)]] 
 +
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 +Franziska Witzel, Nils Blüthgen, 2018, When More Is Less: Dual Phosphorylation Protects Signaling Off State against Overexpression. Biophys. J., 115,  1383-1392  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30217381%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.bpj.2018.08.019|(full text)]] 
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 +Martina Michalikova, Michiel W H Remme, Richard Kempter, 2018, Extracellular waveforms reveal an axonal origin of spikelets in pyramidal neurons. J. Neurophysiol., 120,  1484-1495  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29947587%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1152/jn.00463.2017|(full text)]] 
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 +Bharath Ananthasubramaniam, Axel Diernfellner, Michael Brunner, Hanspeter Herzel, 2018, Ultradian Rhythms in the Transcriptome of Neurospora crassa. iScience, 9,  475-486  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30472532%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.isci.2018.11.012|(full text)]] 
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 +Rukeia El-Athman, Angela Relógio, 2018, Escaping Circadian Regulation: An Emerging Hallmark of Cancer? Cell Syst, 6,  266-267  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29596780%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.cels.2018.03.006|(full text)]] 
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 +Rolf Apweiler, Tim Beissbarth, Michael R Berthold, Nils Blüthgen, Yvonne Burmeister, Olaf Dammann, Andreas Deutsch, Friedrich Feuerhake, Andre Franke, Jan Hasenauer, Steve Hoffmann, Thomas Höfer, Peter Lm Jansen, Lars Kaderali, Ursula Klingmüller, Ina Koch, Oliver Kohlbacher, Lars Kuepfer, Frank Lammert, Dieter Maier, Nico Pfeifer, Nicole Radde, Markus Rehm, Ingo Roeder, Julio Saez-Rodriguez, Ulrich Sax, Bernd Schmeck, Andreas Schuppert, Bernd Seilheimer, Fabian J Theis, Julio Vera, Olaf Wolkenhauer, 2018, Whither systems medicine? Exp. Mol. Med., 50,  e453  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29497170%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/emm.2017.290|(full text)]] 
 +
 +
 +Christian Beck, Henning Knoop, Ralf Steuer, 2018, Modules of co-occurrence in the cyanobacterial pan-genome reveal functional associations between groups of ortholog genes. PLoS Genet., 14,  e1007239  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29522508%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pgen.1007239|(full text)]] 
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 +
 +Roman Zug, Peter Hammerstein, 2018, Evolution of reproductive parasites with direct fitness benefits. Heredity (Edinb), 120,  266-281  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29234159%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/s41437-017-0022-5|(full text)]] 
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 +J Patrick Pett, Matthew Kondoff, Grigory Bordyugov, Achim Kramer, Hanspeter Herzel, 2018, Co-existing feedback loops generate tissue-specific circadian rhythms. Life Sci Alliance, 1,  e201800078  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30456356%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.26508/lsa.201800078|(full text)]] 
 +
 +
 +Christopher T Monk, Matthieu Barbier, Pawel Romanczuk, James R Watson, Josep Alós, Shinnosuke Nakayama, Daniel I Rubenstein, Simon A Levin, Robert Arlinghaus, 2018, How ecology shapes exploitation: a framework to predict the behavioural response of human and animal foragers along exploration-exploitation trade-offs. Ecol. Lett., 21,  779-793  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29611278%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1111/ele.12949|(full text)]] 
 +
 +
 +Mónica Abreu, Alireza Basti, Nikolai Genov, Gianluigi Mazzoccoli, Angela Relógio, 2018, The reciprocal interplay between TNFα and the circadian clock impacts on cell proliferation and migration in Hodgkin lymphoma cells. Sci Rep, 8,  11474  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30065253%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/s41598-018-29847-z|(full text)]] 
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 +Johannes Meisig, Nils Blüthgen, 2018, The gene regulatory network of mESC differentiation: a benchmark for reverse engineering methods. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 373,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29786557%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1098/rstb.2017.0222|(full text)]] 
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 +Patricio Godoy, Wolfgang Schmidt-Heck, Birte Hellwig, Patrick Nell, David Feuerborn, Jörg Rahnenführer, Kathrin Kattler, Jörn Walter, Nils Blüthgen, Jan G Hengstler, 2018, Assessment of stem cell differentiation based on genome-wide expression profiles. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 373,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29786556%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1098/rstb.2017.0221|(full text)]] 
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 +Luise Fuhr, Rukeia El-Athman, Rosella Scrima, Olga Cela, Annalucia Carbone, Henning Knoop, Yin Li, Karen Hoffmann, Mikko O Laukkanen, Francesco Corcione, Ralf Steuer, Thomas F Meyer, Gianluigi Mazzoccoli, Nazzareno Capitanio, Angela Relógio, 2018, The Circadian Clock Regulates Metabolic Phenotype Rewiring Via HKDC1 and Modulates Tumor Progression and Drug Response in Colorectal Cancer. EBioMedicine, 33,  105-121  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30005951%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.ebiom.2018.07.002|(full text)]] 
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 +
 +Rukeia El-Athman, Luise Fuhr, Angela Relógio, 2018, A Systems-Level Analysis Reveals Circadian Regulation of Splicing in Colorectal Cancer. EBioMedicine, 33,  68-81  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29936137%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.ebiom.2018.06.012|(full text)]] 
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 +
 +Christoph Schmal, Erik D Herzog, Hanspeter Herzel, 2018, Measuring Relative Coupling Strength in Circadian Systems. J. Biol. Rhythms, 33,  84-98  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29219034%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1177/0748730417740467|(full text)]] 
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 +
 +Gina Polo, Carlos Mera Acosta, Marcelo B Labruna, Fernando Ferreira, Dirk Brockmann, 2018, Hosts mobility and spatial spread of Rickettsia rickettsii. PLoS Comput. Biol., 14,  e1006636  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30586381%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pcbi.1006636|(full text)]] 
 +
 +
 +Michiel W H Remme, John Rinzel, Susanne Schreiber, 2018, Function and energy consumption constrain neuronal biophysics in a canonical computation: Coincidence detection. PLoS Comput. Biol., 14,  e1006612  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30521528%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pcbi.1006612|(full text)]] 
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 +
 +Mathurin Dorel, Bertram Klinger, Torsten Gross, Anja Sieber, Anirudh Prahallad, Evert Bosdriesz, Lodewyk F A Wessels, Nils Blüthgen, 2018, Modelling signalling networks from perturbation data. Bioinformatics, 34,  4079-4086  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29931053%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1093/bioinformatics/bty473|(full text)]] 
 +
 +
 +Isao T Tokuda, Daisuke Ono, Sato Honma, Ken-Ichi Honma, Hanspeter Herzel, 2018, Coherency of circadian rhythms in the SCN is governed by the interplay of two coupling factors. PLoS Comput. Biol., 14,  e1006607  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30532130%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pcbi.1006607|(full text)]] 
 +
 +
 +André Holzbecher, Richard Kempter, 2018, Interneuronal gap junctions increase synchrony and robustness of hippocampal ripple oscillations. Eur. J. Neurosci., 48,  3446-3465  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30414336%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1111/ejn.14267|(full text)]] 
 +
 +
 +Nicole Wittenbrink, Bharath Ananthasubramaniam, Mirjam Münch, Barbara Koller, Bert Maier, Charlotte Weschke, Frederik Bes, Jan de Zeeuw, Claudia Nowozin, Amely Wahnschaffe, Sophia Wisniewski, Mandy Zaleska, Osnat Bartok, Reut Ashwal-Fluss, Hedwig Lammert, Hanspeter Herzel, Michael Hummel, Sebastian Kadener, Dieter Kunz, Achim Kramer, 2018, High-accuracy determination of internal circadian time from a single blood sample. J. Clin. Invest., 128,  3826-3839  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29953415%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1172/JCI120874|(full text)]] 
 +
 +
 +E Besray Unal, Christina Kiel, Hannah Benisty, Andrew Campbell, Karen Pickering, Nils Blüthgen, Owen J Sansom, Luis Serrano, 2018, Systems level expression correlation of Ras GTPase regulators. Cell Commun. Signal, 16,  46  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30111366%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1186/s12964-018-0256-8|(full text)]] 
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 +
 +David Bierbach, Tim Landgraf, Pawel Romanczuk, Juliane Lukas, Hai Nguyen, Max Wolf, Jens Krause, 2018, Using a robotic fish to investigate individual differences in social responsiveness in the guppy. R Soc Open Sci, 5,  181026  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30225087%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1098/rsos.181026|(full text)]] 
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 +
 +Paula T Kuokkanen, Go Ashida, Anna Kraemer, Thomas McColgan, Kazuo Funabiki, Hermann Wagner, Christine Köppl, Catherine E Carr, Richard Kempter, 2018, Contribution of action potentials to the extracellular field potential in the nucleus laminaris of barn owl. J. Neurophysiol., 119,  1422-1436  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29357463%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1152/jn.00175.2017|(full text)]] 
 +
 +
 +Bertram Klinger, Nils Blüthgen, 2018, Reverse engineering gene regulatory networks by modular response analysis - a benchmark. Essays Biochem., 62,  535-547  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30315094%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1042/EBC20180012|(full text)]] 
 +
 +
 +Jihwan Myung, Christoph Schmal, Sungho Hong, Yoshiaki Tsukizawa, Pia Rose, Yong Zhang, Michael J Holtzman, Erik De Schutter, Hanspeter Herzel, Grigory Bordyugov, Toru Takumi, 2018, The choroid plexus is an important circadian clock component. Nat Commun, 9,  1062  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29540683%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/s41467-018-03507-2|(full text)]] 
 +
 +
 +Michael Schubert, Bertram Klinger, Martina Klünemann, Anja Sieber, Florian Uhlitz, Sascha Sauer, Mathew J Garnett, Nils Blüthgen, Julio Saez-Rodriguez, 2018, Perturbation-response genes reveal signaling footprints in cancer gene expression. Nat Commun, 9,  20  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29295995%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/s41467-017-02391-6|(full text)]] 
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 +
 +Stefano Castellana, Tommaso Mazza, Daniele Capocefalo, Nikolai Genov, Tommaso Biagini, Caterina Fusilli, Felix Scholkmann, Angela Relógio, John B Hogenesch, Gianluigi Mazzoccoli, 2018, Systematic Analysis of Mouse Genome Reveals Distinct Evolutionary and Functional Properties Among Circadian and Ultradian Genes. Front Physiol, 9,  1178  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30190679%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.3389/fphys.2018.01178|(full text)]] 
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 +
 +Ute Abraham, Julia Katharina Schlichting, Achim Kramer, Hanspeter Herzel, 2018, Quantitative analysis of circadian single cell oscillations in response to temperature. PLoS ONE, 13,  e0190004  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29293562%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pone.0190004|(full text)]] 
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 +
 +Laura Cantini, Laurence Calzone, Loredana Martignetti, Mattias Rydenfelt, Nils Blüthgen, Emmanuel Barillot, Andrei Zinovyev, 2018, Classification of gene signatures for their information value and functional redundancy. NPJ Syst Biol Appl, 4,  2  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29263798%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/s41540-017-0038-8|(full text)]] 
 +
 +
 +=== 2017 ===
 +
 +Florian Uhlitz, Anja Sieber, Emanuel Wyler, Raphaela Fritsche-Guenther, Johannes Meisig, Markus Landthaler, Bertram Klinger, Nils Blüthgen, 2017, An immediate-late gene expression module decodes ERK signal duration. Mol. Syst. Biol., 13,  944  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28947433%5Buid%5D|(abstract)]] 
 +
 +
 +Noreen van der Linden, Tom Cornelis, Dorien M Kimenai, Lieke J J Klinkenberg, Judith M Hilderink, Sarah Lück, Elisabeth J R Litjens, Frederique E C M Peeters, Alexander S Streng, Tobias Breidthardt, Luc J C van Loon, Otto Bekers, Jeroen P Kooman, Pål O Westermark, Christian Mueller, Steven J R Meex, 2017, Origin of Cardiac Troponin T Elevations in Chronic Kidney Disease. Circulation, 136,  1073-1075  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28893963%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1161/CIRCULATIONAHA.117.029986|(full text)]] 
 +
 +
 +Thomas McColgan, Ji Liu, Paula Tuulia Kuokkanen, Catherine Emily Carr, Hermann Wagner, Richard Kempter, 2017, Dipolar extracellular potentials generated by axonal projections. Elife, 6,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28871959%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.7554/eLife.26106|(full text)]] 
 +
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 +Evrim B Ünal, Florian Uhlitz, Nils Blüthgen, 2017, A compendium of ERK targets. FEBS Lett., 591,  2607-2615  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28675784%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1002/1873-3468.12740|(full text)]] 
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 +
 +Tiziano D'Albis, Richard Kempter, 2017, A single-cell spiking model for the origin of grid-cell patterns. PLoS Comput. Biol., 13,  e1005782  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28968386%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pcbi.1005782|(full text)]] 
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 +
 +Christoph Schmal, Jihwan Myung, Hanspeter Herzel, Grigory Bordyugov, 2017, Moran's I quantifies spatio-temporal pattern formation in neural imaging data. Bioinformatics, 33,  3072-3079  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28575207%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1093/bioinformatics/btx351|(full text)]] 
 +
 +
 +Benjamin F Maier, Dirk Brockmann, 2017, Cover time for random walks on arbitrary complex networks. Phys Rev E, 96,  042307  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29347543%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1103/PhysRevE.96.042307|(full text)]] 
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 +Michael E Hughes, Katherine C Abruzzi, Ravi Allada, Ron Anafi, Alaaddin Bulak Arpat, Gad Asher, Pierre Baldi, Charissa de Bekker, Deborah Bell-Pedersen, Justin Blau, Steve Brown, M Fernanda Ceriani, Zheng Chen, Joanna C Chiu, Juergen Cox, Alexander M Crowell, Jason P DeBruyne, Derk-Jan Dijk, Luciano DiTacchio, Francis J Doyle, Giles E Duffield, Jay C Dunlap, Kristin Eckel-Mahan, Karyn A Esser, Garret A FitzGerald, Daniel B Forger, Lauren J Francey, Ying-Hui Fu, Frédéric Gachon, David Gatfield, Paul de Goede, Susan S Golden, Carla Green, John Harer, Stacey Harmer, Jeff Haspel, Michael H Hastings, Hanspeter Herzel, Erik D Herzog, Christy Hoffmann, Christian Hong, Jacob J Hughey, Jennifer M Hurley, Horacio O de la Iglesia, Carl Johnson, Steve A Kay, Nobuya Koike, Karl Kornacker, Achim Kramer, Katja Lamia, Tanya Leise, Scott A Lewis, Jiajia Li, Xiaodong Li, Andrew C Liu, Jennifer J Loros, Tami A Martino, Jerome S Menet, Martha Merrow, Andrew J Millar, Todd Mockler, Felix Naef, Emi Nagoshi, Michael N Nitabach, Maria Olmedo, Dmitri A Nusinow, Louis J Ptáček, David Rand, Akhilesh B Reddy, Maria S Robles, Till Roenneberg, Michael Rosbash, Marc D Ruben, Samuel S C Rund, Aziz Sancar, Paolo Sassone-Corsi, Amita Sehgal, Scott Sherrill-Mix, Debra J Skene, Kai-Florian Storch, Joseph S Takahashi, Hiroki R Ueda, Han Wang, Charles Weitz, Pål O Westermark, Herman Wijnen, Ying Xu, Gang Wu, Seung-Hee Yoo, Michael Young, Eric Erquan Zhang, Tomasz Zielinski, John B Hogenesch, 2017, Guidelines for Genome-Scale Analysis of Biological Rhythms. J. Biol. Rhythms, 32,  380-393  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29098954%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1177/0748730417728663|(full text)]] 
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 +
 +Guido Hermey, Nils Blüthgen, Dietmar Kuhl, 2017, Neuronal activity-regulated alternative mRNA splicing. Int. J. Biochem. Cell Biol., 91,  184-193  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28591617%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.biocel.2017.06.002|(full text)]] 
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 +Jochen Winterer, Nikolaus Maier, Christian Wozny, Prateep Beed, Jörg Breustedt, Roberta Evangelista, Yangfan Peng, Tiziano D'Albis, Richard Kempter, Dietmar Schmitz, 2017, Excitatory Microcircuits within Superficial Layers of the Medial Entorhinal Cortex. Cell Rep, 19,  1110-1116  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28494861%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.celrep.2017.04.041|(full text)]] 
 +
 +
 +Florian Uhlitz, Anja Sieber, Emanuel Wyler, Raphaela Fritsche-Guenther, Johannes Meisig, Markus Landthaler, Bertram Klinger, Nils Blüthgen, 2017, An immediate-late gene expression module decodes ERK signal duration. Mol. Syst. Biol., 13,  928  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28468958%5Buid%5D|(abstract)]] 
 +
 +
 +Janina Hesse, Jan-Hendrik Schleimer, Susanne Schreiber, 2017, Qualitative changes in phase-response curve and synchronization at the saddle-node-loop bifurcation. Phys Rev E, 95,  052203  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28618541%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1103/PhysRevE.95.052203|(full text)]] 
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 +Marianne Gründel, Henning Knoop, Ralf Steuer, 2017, Activity and functional properties of the isocitrate lyase in the cyanobacterium Cyanothece sp. PCC 7424. Microbiology (Reading, Engl.), 163,  731-744  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28516845%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1099/mic.0.000459|(full text)]] 
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 +Nils Blüthgen, Mirjam van Bentum, Barbara Merz, Dietmar Kuhl, Guido Hermey, 2017, Profiling the MAPK/ERK dependent and independent activity regulated transcriptional programs in the murine hippocampus in vivo. Sci Rep, 7,  45101  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28349920%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/srep45101|(full text)]] 
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 +Yinxiu Zhan, Luca Mariani, Iros Barozzi, Edda G Schulz, Nils Blüthgen, Michael Stadler, Guido Tiana, Luca Giorgetti, 2017, Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomes. Genome Res., 27,  479-490  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28057745%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1101/gr.212803.116|(full text)]] 
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 +Federica Eduati, Victoria Doldàn-Martelli, Bertram Klinger, Thomas Cokelaer, Anja Sieber, Fiona Kogera, Mathurin Dorel, Mathew J Garnett, Nils Blüthgen, Julio Saez-Rodriguez, 2017, Drug Resistance Mechanisms in Colorectal Cancer Dissected with Cell Type-Specific Dynamic Logic Models. Cancer Res., 77,  3364-3375  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28381545%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1158/0008-5472.CAN-17-0078|(full text)]] 
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 +Pamela Riemer, Mattias Rydenfelt, Matthias Marks, Karen van Eunen, Kathrin Thedieck, Bernhard G Herrmann, Nils Blüthgen, Christine Sers, Markus Morkel, 2017, Oncogenic β-catenin and PIK3CA instruct network states and cancer phenotypes in intestinal organoids. J. Cell Biol., 216,  1567-1577  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28442534%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1083/jcb.201610058|(full text)]] 
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 +Alexandra-M Reimers, Henning Knoop, Alexander Bockmayr, Ralf Steuer, 2017, Cellular trade-offs and optimal resource allocation during cyanobacterial diurnal growth. Proc. Natl. Acad. Sci. U.S.A., ,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28720699%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1073/pnas.1617508114|(full text)]] 
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 +Nikolay Chenkov, Henning Sprekeler, Richard Kempter, 2017, Memory replay in balanced recurrent networks. PLoS Comput. Biol., 13,  e1005359  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28135266%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pcbi.1005359|(full text)]] 
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 +David Druzd, Olga Matveeva, Louise Ince, Ute Harrison, Wenyan He, Christoph Schmal, Hanspeter Herzel, Anthony H Tsang, Naoto Kawakami, Alexei Leliavski, Olaf Uhl, Ling Yao, Leif Erik Sander, Chien-Sin Chen, Kerstin Kraus, Alba de Juan, Sophia Martina Hergenhan, Marc Ehlers, Berthold Koletzko, Rainer Haas, Werner Solbach, Henrik Oster, Christoph Scheiermann, 2017, Lymphocyte Circadian Clocks Control Lymph Node Trafficking and Adaptive Immune Responses. Immunity, 46,  120-132  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28087238%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.immuni.2016.12.011|(full text)]] 
 +
 +
 +Flavio Iannelli, Andreas Koher, Dirk Brockmann, Philipp Hövel, Igor M Sokolov, 2017, Effective distances for epidemics spreading on complex networks. Phys Rev E, 95,  012313  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28208446%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1103/PhysRevE.95.012313|(full text)]] 
 +
 +
 +Martina Michalikova, Michiel W H Remme, Richard Kempter, 2017, Spikelets in Pyramidal Neurons: Action Potentials Initiated in the Axon Initial Segment That Do Not Activate the Soma. PLoS Comput. Biol., 13,  e1005237  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28068338%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pcbi.1005237|(full text)]] 
 +
 +
 +David Malatinszky, Ralf Steuer, Patrik R Jones, 2017, A Comprehensively Curated Genome-Scale Two-Cell Model for the Heterocystous Cyanobacterium Anabaena sp. PCC 7120. Plant Physiol., 173,  509-523  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27899536%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1104/pp.16.01487|(full text)]] 
 +
 +
 +Kevin Thurley, Christopher Herbst, Felix Wesener, Barbara Koller, Thomas Wallach, Bert Maier, Achim Kramer, Pål O Westermark, 2017, Principles for circadian orchestration of metabolic pathways. Proc. Natl. Acad. Sci. U.S.A., 114,  1572-1577  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28159888%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1073/pnas.1613103114|(full text)]] 
 +
 +
 +Rukeia El-Athman, Nikolai N Genov, Jeannine Mazuch, Kaiyang Zhang, Yong Yu, Luise Fuhr, Mónica Abreu, Yin Li, Thomas Wallach, Achim Kramer, Clemens A Schmitt, Angela Relógio, 2017, The Ink4a/Arf locus operates as a regulator of the circadian clock modulating RAS activity. PLoS Biol., 15,  e2002940  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29216180%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pbio.2002940|(full text)]] 
 +
 +
 +Gregor Mönke, Elena Cristiano, Ana Finzel, Dhana Friedrich, Hanspeter Herzel, Martin Falcke, Alexander Loewer, 2017, Excitability in the p53 network mediates robust signaling with tunable activation thresholds in single cells. Sci Rep, 7,  46571  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28417973%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/srep46571|(full text)]] 
 +
 +
 +Jorge Jaramillo, Richard Kempter, 2017, Phase precession: a neural code underlying episodic memory? Curr. Opin. Neurobiol., 43,  130-138  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28390862%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.conb.2017.02.006|(full text)]] 
 +
 +
 +Katharina Anna Wilmes, Jan-Hendrik Schleimer, Susanne Schreiber, 2017, Spike-timing dependent inhibitory plasticity to learn a selective gating of backpropagating action potentials. Eur. J. Neurosci., 45,  1032-1043  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27374316%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1111/ejn.13326|(full text)]] 
 +
 +
 +Bruno Christ, Uta Dahmen, Karl-Heinz Herrmann, Matthias König, Jürgen R Reichenbach, Tim Ricken, Jana Schleicher, Lars Ole Schwen, Sebastian Vlaic, Navina Waschinsky, 2017, Computational Modeling in Liver Surgery. Front Physiol, 8,  906  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29249974%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.3389/fphys.2017.00906|(full text)]] 
 +
 +
 +Lucas Böttcher, Olivia Woolley-Meza, Dirk Brockmann, 2017, Temporal dynamics of online petitions. PLoS ONE, 12,  e0178062  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28542492%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pone.0178062|(full text)]] 
  
 === 2016 === === 2016 ===
  
-Patricio Godoy, Agata Widera, Wolfgang Schmidt-Heck, Gisela Campos, Christoph Meyer, Cristina Cadenas, Raymond Reif, Regina Stöber, Seddik Hammad, Larissa Pütter, Kathrin Gianmoena, Rosemarie Marchan, Ahmed Ghallab, Karolina Edlund, Andreas Nüssler, Wolfgang E Thasler, Georg Damm, Daniel Seehofer, Thomas S Weiss, Olaf Dirsch, Uta Dahmen, Rolf Gebhardt, Umesh Chaudhari, Kesavan Meganathan, Agapios Sachinidis, Jens Kelm, Ute Hofmann, René P Zahedi, Reinhard Guthke, Nils Blüthgen, Steven Dooley, Jan G Hengstler, 2016, Gene network activity in cultivated primary hepatocytes is highly similar to diseased mammalian liver tissue. Arch. Toxicol., ,    [[http://dx.doi.org/10.1007/s00204-016-1761-4|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27339419%5Buid%5D|(abstract)]] +Stefanie Westermark, Ralf Steuer, 2016, Toward Multiscale Models of Cyanobacterial Growth: A Modular Approach. Front Bioeng Biotechnol, 4,  95  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28083530%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.3389/fbioe.2016.00095|(full text)]]  
 + 
 + 
 +Marco Gebiola, Suzanne E Kelly, Peter Hammerstein, Massimo Giorgini, Martha S Hunter, 2016, "Darwin's corollary" and cytoplasmic incompatibility induced by Cardinium may contribute to speciation in Encarsia wasps (Hymenoptera: Aphelinidae). Evolution, 70,  2447-2458  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27530694%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1111/evo.13037|(full text)]]  
 + 
 + 
 +Alba Diz-Muñoz, Pawel Romanczuk, Weimiao Yu, Martin Bergert, Kenzo Ivanovitch, Guillaume Salbreux, Carl-Philipp Heisenberg, Ewa K Paluch, 2016, Steering cell migration by alternating blebs and actin-rich protrusions. BMC Biol., 14,  74  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27589901%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1186/s12915-016-0294-x|(full text)]]  
 + 
 + 
 +Dagmar Waltemath, Jonathan R Karr, Frank T Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K Aranganathan, Kambiz Baghalian, Arne T Bittig, Paulo E Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S Costa, Joseph Cursons, Tobias Czauderna, Arthur P Goldberg, Harold F Gomez, Jens Hahn, Tuure Hameri, Daniel F Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knupfer, Matthias Konig, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Toure, Jannis Uhlendorf, Thawfeek M Varusai, Leandro H Watanabe, Florian Wendland, Markus Wolfien, James T Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber, 2016, Toward Community Standards and Software for Whole-Cell Modeling. IEEE Trans Biomed Eng, 63,  2007-14  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27305665%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1109/TBME.2016.2560762|(full text)]]  
 + 
 + 
 +Christian H Gabriel, Fridolin Gross, Martin Karl, Heike Stephanowitz, Anna Floriane Hennig, Melanie Weber, Stefanie Gryzik, Ivo Bachmann, Katharina Hecklau, Jürgen Wienands, Johannes Schuchhardt, Hanspeter Herzel, Andreas Radbruch, Eberhard Krause, Ria Baumgrass, 2016, Identification of Novel Nuclear Factor of Activated T Cell (NFAT)-associated Proteins in T Cells. J. Biol. Chem., 291,  24172-24187  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27637333%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1074/jbc.M116.739326|(full text)]]  
 + 
 + 
 +Vaibhav Shinde, Sureshkumar Perumal Srinivasan, Margit Henry, Tamara Rotshteyn, Jürgen Hescheler, Jörg Rahnenführer, Marianna Grinberg, Johannes Meisig, Nils Blüthgen, Tanja Waldmann, Marcel Leist, Jan Georg Hengstler, Agapios Sachinidis, 2016, Comparison of a teratogenic transcriptome-based predictive test based on human embryonic versus inducible pluripotent stem cells. Stem Cell Res Ther, 7,  190  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28038682%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1186/s13287-016-0449-2|(full text)]]  
 + 
 + 
 +Franziska Fuhrmann, Timo Lischke, Fridolin Gross, Tobias Scheel, Laura Bauer, Khalid Wasim Kalim, Andreas Radbruch, Hanspeter Herzel, Andreas Hutloff, Ria Baumgrass, 2016, Adequate immune response ensured by binary IL-2 and graded CD25 expression in a murine transfer model. Elife, 5,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28035902%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.7554/eLife.20616|(full text)]]  
 + 
 + 
 +Katharina Baum, Antonio Z Politi, Bente Kofahl, Ralf Steuer, Jana Wolf, 2016, Feedback, Mass Conservation and Reaction Kinetics Impact the Robustness of Cellular Oscillations. PLoS Comput. Biol., 12,  e1005298  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28027301%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pcbi.1005298|(full text)]]  
 + 
 + 
 +James E Herbert-Read, Pawel Romanczuk, Stefan Krause, Daniel Strömbom, Pierre Couillaud, Paolo Domenici, Ralf H J M Kurvers, Stefano Marras, John F Steffensen, Alexander D M Wilson, Jens Krause, 2016, Correction to 'Proto-cooperation: group hunting sailfish improve hunting success by alternating attacks on grouping prey'. Proc. Biol. Sci., 283,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28003459%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1098/rspb.2016.2586|(full text)]]  
 + 
 + 
 +J Patrick Pett, Anja Korenčič, Felix Wesener, Achim Kramer, Hanspeter Herzel, 2016, Feedback Loops of the Mammalian Circadian Clock Constitute Repressilator. PLoS Comput. Biol., 12,  e1005266  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27942033%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pcbi.1005266|(full text)]]  
 + 
 + 
 +Jan-Hendrik Schleimer, Susanne Schreiber, 2016, Homeostasis: How Neurons Achieve Temperature Invariance. Curr. Biol., 26,  R1141-R1143  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27825449%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.cub.2016.09.063|(full text)]]  
 + 
 + 
 +James E Herbert-Read, Pawel Romanczuk, Stefan Krause, Daniel Strömbom, Pierre Couillaud, Paolo Domenici, Ralf H J M Kurvers, Stefano Marras, John F Steffensen, Alexander D M Wilson, Jens Krause, 2016, Proto-cooperation: group hunting sailfish improve hunting success by alternating attacks on grouping prey. Proc. Biol. Sci., 283,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27807269%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1098/rspb.2016.1671|(full text)]]  
 + 
 + 
 +Alexandra S Klein, José R Donoso, Richard Kempter, Dietmar Schmitz, Prateep Beed, 2016, Early Cortical Changes in Gamma Oscillations in Alzheimer's Disease. Front Syst Neurosci, 10,  83  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27833535%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.3389/fnsys.2016.00083|(full text)]]  
 + 
 + 
 +Tim Landgraf, David Bierbach, Hai Nguyen, Nadine Muggelberg, Pawel Romanczuk, Jens Krause, 2016, RoboFish: increased acceptance of interactive robotic fish with realistic eyes and natural motion patterns by live Trinidadian guppies. Bioinspir Biomim, 11,  015001  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26757096%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1088/1748-3190/11/1/015001|(full text)]]  
 + 
 + 
 +Patricio Godoy, Agata Widera, Wolfgang Schmidt-Heck, Gisela Campos, Christoph Meyer, Cristina Cadenas, Raymond Reif, Regina Stöber, Seddik Hammad, Larissa Pütter, Kathrin Gianmoena, Rosemarie Marchan, Ahmed Ghallab, Karolina Edlund, Andreas Nüssler, Wolfgang E Thasler, Georg Damm, Daniel Seehofer, Thomas S Weiss, Olaf Dirsch, Uta Dahmen, Rolf Gebhardt, Umesh Chaudhari, Kesavan Meganathan, Agapios Sachinidis, Jens Kelm, Ute Hofmann, René P Zahedi, Reinhard Guthke, Nils Blüthgen, Steven Dooley, Jan G Hengstler, 2016, Gene network activity in cultivated primary hepatocytes is highly similar to diseased mammalian liver tissue. Arch. Toxicol., 90 2513-29  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27339419%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1007/s00204-016-1761-4|(full text)]]  
 + 
 + 
 +Paul F Thaben, Pål O Westermark, 2016, Differential rhythmicity: detecting altered rhythmicity in biological data. Bioinformatics, 32,  2800-8  [[http://dx.doi.org/10.1093/bioinformatics/btw309|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27207944%5Buid%5D|(abstract)]]  
 + 
 + 
 +John M McNamara, Sasha R X Dall, Peter Hammerstein, Olof Leimar, 2016, Detection vs. selection: integration of genetic, epigenetic and environmental cues in fluctuating environments. Ecol. Lett., 19,  1267-76  [[http://dx.doi.org/10.1111/ele.12663|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27600658%5Buid%5D|(abstract)]]  
 + 
 + 
 +Tomáš Zavřel, Jan Červený, Henning Knoop, Ralf Steuer, 2016, Optimizing cyanobacterial product synthesis: Meeting the challenges. Bioengineered, 7,  490-496  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27420605%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1080/21655979.2016.1207017|(full text)]]  
 + 
 + 
 +Agata Michna, Herbert Braselmann, Martin Selmansberger, Anne Dietz, Julia Hess, Maria Gomolka, Sabine Hornhardt, Nils Blüthgen, Horst Zitzelsberger, Kristian Unger, 2016, Natural Cubic Spline Regression Modeling Followed by Dynamic Network Reconstruction for the Identification of Radiation-Sensitivity Gene Association Networks from Time-Course Transcriptome Data. PLoS ONE, 11,  e0160791  [[http://dx.doi.org/10.1371/journal.pone.0160791|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27505168%5Buid%5D|(abstract)]] 
  
  
-Paul F Thaben, Pål O Westermark, 2016, Differential rhythmicity: detecting altered rhythmicity in biological dataBioinformatics, ,    [[http://dx.doi.org/10.1093/bioinformatics/btw309|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27207944%5Buid%5D|(abstract)]] +Pål O Westermark, 2016, Linking Core Promoter Classes to Circadian Transcription. PLoS Genet., 12 e1006231  [[http://dx.doi.org/10.1371/journal.pgen.1006231|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27504829%5Buid%5D|(abstract)]] 
  
  
-Christian T HerbstJakob UngerHanspeter HerzelJan G ŠvecJörg Lohscheller, 2016, Phasegram Analysis of Vocal Fold Vibration Documented With Laryngeal High-speed Video EndoscopyJ Voice, ,    [[http://dx.doi.org/10.1016/j.jvoice.2015.11.006|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26879075%5Buid%5D|(abstract)]] +Christian Laut EbbesenEric Torsten ReifensteinQiusong TangAndrea BurgalossiSaikat Ray, Susanne Schreiber, Richard Kempter, Michael Brecht, 2016, Cell Type-Specific Differences in Spike Timing and Spike Shape in the Rat Parasubiculum and Superficial Medial Entorhinal CortexCell Rep16 1005-15  [[http://dx.doi.org/10.1016/j.celrep.2016.06.057|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27425616%5Buid%5D|(abstract)]] 
  
  
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 Eric T Reifenstein, Christian L Ebbesen, Qiusong Tang, Michael Brecht, Susanne Schreiber, Richard Kempter, 2016, Cell-Type Specific Phase Precession in Layer II of the Medial Entorhinal Cortex. J. Neurosci., 36,  2283-8  [[http://dx.doi.org/10.1523/JNEUROSCI.2986-15.2016|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26888937%5Buid%5D|(abstract)]]  Eric T Reifenstein, Christian L Ebbesen, Qiusong Tang, Michael Brecht, Susanne Schreiber, Richard Kempter, 2016, Cell-Type Specific Phase Precession in Layer II of the Medial Entorhinal Cortex. J. Neurosci., 36,  2283-8  [[http://dx.doi.org/10.1523/JNEUROSCI.2986-15.2016|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26888937%5Buid%5D|(abstract)]] 
 +
 +
 +Christian T Herbst, Jakob Unger, Hanspeter Herzel, Jan G Švec, Jörg Lohscheller, 2016, Phasegram Analysis of Vocal Fold Vibration Documented With Laryngeal High-speed Video Endoscopy. J Voice, 30,  771.e1-771.e15  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26879075%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.jvoice.2015.11.006|(full text)]] 
  
  
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 Peter Hammerstein, Ronald Noë, 2016, Biological trade and markets. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 371,    [[http://dx.doi.org/10.1098/rstb.2015.0101|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26729940%5Buid%5D|(abstract)]]  Peter Hammerstein, Ronald Noë, 2016, Biological trade and markets. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 371,    [[http://dx.doi.org/10.1098/rstb.2015.0101|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26729940%5Buid%5D|(abstract)]] 
- 
- 
  
 === 2015 === === 2015 ===
- 
-Nadine Rohwer, Fabian Bindel, Christina Grimm, Suling J Lin, Jessica Wappler, Bertram Klinger, Nils Blüthgen, Ilona Du Bois, Bernd Schmeck, Hans Lehrach, Marjo de Graauw, Emanuel Goncalves, Julio Saez-Rodriguez, Patrick Tan, Heike I Grabsch, Alessandro Prigione, Stefan Kempa, Thorsten Cramer, 2015, Annexin A1 sustains tumor metabolism and cellular proliferation upon stable loss of HIF1A. Oncotarget, ,    [[http://dx.doi.org/10.18632/oncotarget.6793|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26760764%5Buid%5D|(abstract)]]  
  
 Nadine Dreser, Bastian Zimmer, Christian Dietz, Elena Sügis, Giorgia Pallocca, Johanna Nyffeler, Johannes Meisig, Nils Blüthgen, Michael R Berthold, Tanja Waldmann, Marcel Leist, 2015, Grouping of histone deacetylase inhibitors and other toxicants disturbing neural crest migration by transcriptional profiling. Neurotoxicology, 50,  56-70  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26238599%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.neuro.2015.07.008|(full text)]]  Nadine Dreser, Bastian Zimmer, Christian Dietz, Elena Sügis, Giorgia Pallocca, Johanna Nyffeler, Johannes Meisig, Nils Blüthgen, Michael R Berthold, Tanja Waldmann, Marcel Leist, 2015, Grouping of histone deacetylase inhibitors and other toxicants disturbing neural crest migration by transcriptional profiling. Neurotoxicology, 50,  56-70  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26238599%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.neuro.2015.07.008|(full text)]] 
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 Nils Blüthgen, 2015, Signaling output: it's all about timing and feedbacks. Mol. Syst. Biol., 11,  843  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26613962%5Buid%5D|(abstract)]]  Nils Blüthgen, 2015, Signaling output: it's all about timing and feedbacks. Mol. Syst. Biol., 11,  843  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26613962%5Buid%5D|(abstract)]] 
 +
 +
 +Kerstin Abshagen, Matthias König, Andreas Hoppe, Isabell Müller, Matthias Ebert, Honglei Weng, Herrmann-Georg Holzhütter, Ulrich M Zanger, Johannes Bode, Brigitte Vollmar, Maria Thomas, Steven Dooley, 2015, Pathobiochemical signatures of cholestatic liver disease in bile duct ligated mice. BMC Syst Biol, 9,  83  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26589287%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1186/s12918-015-0229-0|(full text)]] 
  
  
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 Sven Blankenburg, Wei Wu, Benjamin Lindner, Susanne Schreiber, 2015, Information filtering in resonant neurons. J Comput Neurosci, 39,  349-70  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26546022%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1007/s10827-015-0580-6|(full text)]]  Sven Blankenburg, Wei Wu, Benjamin Lindner, Susanne Schreiber, 2015, Information filtering in resonant neurons. J Comput Neurosci, 39,  349-70  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26546022%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1007/s10827-015-0580-6|(full text)]] 
 +
 +
 +Endre T Somogyi, Jean-Marie Bouteiller, James A Glazier, Matthias König, J Kyle Medley, Maciej H Swat, Herbert M Sauro, 2015, libRoadRunner: a high performance SBML simulation and analysis library. Bioinformatics, 31,  3315-21  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=26085503%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1093/bioinformatics/btv363|(full text)]] 
  
  
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 Roman Zug, Peter Hammerstein, 2015, Bad guys turned nice? A critical assessment of Wolbachia mutualisms in arthropod hosts. Biol Rev Camb Philos Soc, 90,  89-111  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24618033%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1111/brv.12098|(full text)]]  Roman Zug, Peter Hammerstein, 2015, Bad guys turned nice? A critical assessment of Wolbachia mutualisms in arthropod hosts. Biol Rev Camb Philos Soc, 90,  89-111  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24618033%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1111/brv.12098|(full text)]] 
 +