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publications:start [2017/10/05 10:54]
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publications:start [2018/12/28 13:29] (current)
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-Tiziano D'AlbisRichard Kempter2017, A single-cell spiking model for the origin of grid-cell patterns. PLoS Comput. Biol., 13,  e1005782  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28968386%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pcbi.1005782|(full text)]] +Leiron FerrareseJean-Sébastien JouhanneauMichiel W H RemmeJens Kremkow, Gergely Katona, Balázs Rózsa, Susanne Schreiber, James F Poulet, 2018, Dendrite-Specific Amplification of Weak Synaptic Input during Network Activity In VivoCell Rep24,  3455-3465.e5  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30257207%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.celrep.2018.08.088|(full text)]] 
  
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 +Evert Bosdriesz, Anirudh Prahallad, Bertram Klinger, Anja Sieber, Astrid Bosma, René Bernards, Nils Blüthgen, Lodewyk F A Wessels, 2018, Comparative Network Reconstruction using mixed integer programming. Bioinformatics, 34,  i997-i1004  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30423075%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1093/bioinformatics/bty616|(full text)]] 
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 +Franziska Witzel, Nils Blüthgen, 2018, When More Is Less: Dual Phosphorylation Protects Signaling Off State against Overexpression. Biophys. J., 115,  1383-1392  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30217381%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.bpj.2018.08.019|(full text)]] 
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 +Martina Michalikova, Michiel W H Remme, Richard Kempter, 2018, Extracellular waveforms reveal an axonal origin of spikelets in pyramidal neurons. J. Neurophysiol., 120,  1484-1495  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29947587%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1152/jn.00463.2017|(full text)]] 
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 +Bharath Ananthasubramaniam, Axel Diernfellner, Michael Brunner, Hanspeter Herzel, 2018, Ultradian Rhythms in the Transcriptome of Neurospora crassa. iScience, 9,  475-486  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30472532%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.isci.2018.11.012|(full text)]] 
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 +Rukeia El-Athman, Angela Relógio, 2018, Escaping Circadian Regulation: An Emerging Hallmark of Cancer? Cell Syst, 6,  266-267  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29596780%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.cels.2018.03.006|(full text)]] 
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 +Rolf Apweiler, Tim Beissbarth, Michael R Berthold, Nils Blüthgen, Yvonne Burmeister, Olaf Dammann, Andreas Deutsch, Friedrich Feuerhake, Andre Franke, Jan Hasenauer, Steve Hoffmann, Thomas Höfer, Peter Lm Jansen, Lars Kaderali, Ursula Klingmüller, Ina Koch, Oliver Kohlbacher, Lars Kuepfer, Frank Lammert, Dieter Maier, Nico Pfeifer, Nicole Radde, Markus Rehm, Ingo Roeder, Julio Saez-Rodriguez, Ulrich Sax, Bernd Schmeck, Andreas Schuppert, Bernd Seilheimer, Fabian J Theis, Julio Vera, Olaf Wolkenhauer, 2018, Whither systems medicine? Exp. Mol. Med., 50,  e453  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29497170%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/emm.2017.290|(full text)]] 
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 +Christian Beck, Henning Knoop, Ralf Steuer, 2018, Modules of co-occurrence in the cyanobacterial pan-genome reveal functional associations between groups of ortholog genes. PLoS Genet., 14,  e1007239  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29522508%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pgen.1007239|(full text)]] 
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 +Roman Zug, Peter Hammerstein, 2018, Evolution of reproductive parasites with direct fitness benefits. Heredity (Edinb), 120,  266-281  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29234159%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/s41437-017-0022-5|(full text)]] 
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 +J Patrick Pett, Matthew Kondoff, Grigory Bordyugov, Achim Kramer, Hanspeter Herzel, 2018, Co-existing feedback loops generate tissue-specific circadian rhythms. Life Sci Alliance, 1,  e201800078  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30456356%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.26508/lsa.201800078|(full text)]] 
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 +Christopher T Monk, Matthieu Barbier, Pawel Romanczuk, James R Watson, Josep Alós, Shinnosuke Nakayama, Daniel I Rubenstein, Simon A Levin, Robert Arlinghaus, 2018, How ecology shapes exploitation: a framework to predict the behavioural response of human and animal foragers along exploration-exploitation trade-offs. Ecol. Lett., 21,  779-793  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29611278%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1111/ele.12949|(full text)]] 
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 +Mónica Abreu, Alireza Basti, Nikolai Genov, Gianluigi Mazzoccoli, Angela Relógio, 2018, The reciprocal interplay between TNFα and the circadian clock impacts on cell proliferation and migration in Hodgkin lymphoma cells. Sci Rep, 8,  11474  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30065253%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/s41598-018-29847-z|(full text)]] 
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 +Johannes Meisig, Nils Blüthgen, 2018, The gene regulatory network of mESC differentiation: a benchmark for reverse engineering methods. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 373,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29786557%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1098/rstb.2017.0222|(full text)]] 
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 +Patricio Godoy, Wolfgang Schmidt-Heck, Birte Hellwig, Patrick Nell, David Feuerborn, Jörg Rahnenführer, Kathrin Kattler, Jörn Walter, Nils Blüthgen, Jan G Hengstler, 2018, Assessment of stem cell differentiation based on genome-wide expression profiles. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 373,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29786556%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1098/rstb.2017.0221|(full text)]] 
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 +Luise Fuhr, Rukeia El-Athman, Rosella Scrima, Olga Cela, Annalucia Carbone, Henning Knoop, Yin Li, Karen Hoffmann, Mikko O Laukkanen, Francesco Corcione, Ralf Steuer, Thomas F Meyer, Gianluigi Mazzoccoli, Nazzareno Capitanio, Angela Relógio, 2018, The Circadian Clock Regulates Metabolic Phenotype Rewiring Via HKDC1 and Modulates Tumor Progression and Drug Response in Colorectal Cancer. EBioMedicine, 33,  105-121  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30005951%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.ebiom.2018.07.002|(full text)]] 
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 +Rukeia El-Athman, Luise Fuhr, Angela Relógio, 2018, A Systems-Level Analysis Reveals Circadian Regulation of Splicing in Colorectal Cancer. EBioMedicine, 33,  68-81  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29936137%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.ebiom.2018.06.012|(full text)]] 
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 +Christoph Schmal, Erik D Herzog, Hanspeter Herzel, 2018, Measuring Relative Coupling Strength in Circadian Systems. J. Biol. Rhythms, 33,  84-98  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29219034%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1177/0748730417740467|(full text)]] 
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 +Gina Polo, Carlos Mera Acosta, Marcelo B Labruna, Fernando Ferreira, Dirk Brockmann, 2018, Hosts mobility and spatial spread of Rickettsia rickettsii. PLoS Comput. Biol., 14,  e1006636  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30586381%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pcbi.1006636|(full text)]] 
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 +Michiel W H Remme, John Rinzel, Susanne Schreiber, 2018, Function and energy consumption constrain neuronal biophysics in a canonical computation: Coincidence detection. PLoS Comput. Biol., 14,  e1006612  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30521528%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pcbi.1006612|(full text)]] 
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 +Mathurin Dorel, Bertram Klinger, Torsten Gross, Anja Sieber, Anirudh Prahallad, Evert Bosdriesz, Lodewyk F A Wessels, Nils Blüthgen, 2018, Modelling signalling networks from perturbation data. Bioinformatics, 34,  4079-4086  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29931053%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1093/bioinformatics/bty473|(full text)]] 
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 +Isao T Tokuda, Daisuke Ono, Sato Honma, Ken-Ichi Honma, Hanspeter Herzel, 2018, Coherency of circadian rhythms in the SCN is governed by the interplay of two coupling factors. PLoS Comput. Biol., 14,  e1006607  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30532130%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pcbi.1006607|(full text)]] 
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 +André Holzbecher, Richard Kempter, 2018, Interneuronal gap junctions increase synchrony and robustness of hippocampal ripple oscillations. Eur. J. Neurosci., 48,  3446-3465  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30414336%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1111/ejn.14267|(full text)]] 
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 +Nicole Wittenbrink, Bharath Ananthasubramaniam, Mirjam Münch, Barbara Koller, Bert Maier, Charlotte Weschke, Frederik Bes, Jan de Zeeuw, Claudia Nowozin, Amely Wahnschaffe, Sophia Wisniewski, Mandy Zaleska, Osnat Bartok, Reut Ashwal-Fluss, Hedwig Lammert, Hanspeter Herzel, Michael Hummel, Sebastian Kadener, Dieter Kunz, Achim Kramer, 2018, High-accuracy determination of internal circadian time from a single blood sample. J. Clin. Invest., 128,  3826-3839  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29953415%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1172/JCI120874|(full text)]] 
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 +E Besray Unal, Christina Kiel, Hannah Benisty, Andrew Campbell, Karen Pickering, Nils Blüthgen, Owen J Sansom, Luis Serrano, 2018, Systems level expression correlation of Ras GTPase regulators. Cell Commun. Signal, 16,  46  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30111366%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1186/s12964-018-0256-8|(full text)]] 
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 +David Bierbach, Tim Landgraf, Pawel Romanczuk, Juliane Lukas, Hai Nguyen, Max Wolf, Jens Krause, 2018, Using a robotic fish to investigate individual differences in social responsiveness in the guppy. R Soc Open Sci, 5,  181026  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30225087%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1098/rsos.181026|(full text)]] 
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 +Paula T Kuokkanen, Go Ashida, Anna Kraemer, Thomas McColgan, Kazuo Funabiki, Hermann Wagner, Christine Köppl, Catherine E Carr, Richard Kempter, 2018, Contribution of action potentials to the extracellular field potential in the nucleus laminaris of barn owl. J. Neurophysiol., 119,  1422-1436  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29357463%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1152/jn.00175.2017|(full text)]] 
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 +Bertram Klinger, Nils Blüthgen, 2018, Reverse engineering gene regulatory networks by modular response analysis - a benchmark. Essays Biochem., 62,  535-547  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30315094%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1042/EBC20180012|(full text)]] 
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 +Jihwan Myung, Christoph Schmal, Sungho Hong, Yoshiaki Tsukizawa, Pia Rose, Yong Zhang, Michael J Holtzman, Erik De Schutter, Hanspeter Herzel, Grigory Bordyugov, Toru Takumi, 2018, The choroid plexus is an important circadian clock component. Nat Commun, 9,  1062  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29540683%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/s41467-018-03507-2|(full text)]] 
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 +Michael Schubert, Bertram Klinger, Martina Klünemann, Anja Sieber, Florian Uhlitz, Sascha Sauer, Mathew J Garnett, Nils Blüthgen, Julio Saez-Rodriguez, 2018, Perturbation-response genes reveal signaling footprints in cancer gene expression. Nat Commun, 9,  20  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29295995%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/s41467-017-02391-6|(full text)]] 
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 +Stefano Castellana, Tommaso Mazza, Daniele Capocefalo, Nikolai Genov, Tommaso Biagini, Caterina Fusilli, Felix Scholkmann, Angela Relógio, John B Hogenesch, Gianluigi Mazzoccoli, 2018, Systematic Analysis of Mouse Genome Reveals Distinct Evolutionary and Functional Properties Among Circadian and Ultradian Genes. Front Physiol, 9,  1178  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=30190679%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.3389/fphys.2018.01178|(full text)]] 
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 +Ute Abraham, Julia Katharina Schlichting, Achim Kramer, Hanspeter Herzel, 2018, Quantitative analysis of circadian single cell oscillations in response to temperature. PLoS ONE, 13,  e0190004  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29293562%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pone.0190004|(full text)]] 
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 +Laura Cantini, Laurence Calzone, Loredana Martignetti, Mattias Rydenfelt, Nils Blüthgen, Emmanuel Barillot, Andrei Zinovyev, 2018, Classification of gene signatures for their information value and functional redundancy. NPJ Syst Biol Appl, 4,  2  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29263798%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/s41540-017-0038-8|(full text)]] 
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 +=== 2017 ===
  
 Florian Uhlitz, Anja Sieber, Emanuel Wyler, Raphaela Fritsche-Guenther, Johannes Meisig, Markus Landthaler, Bertram Klinger, Nils Blüthgen, 2017, An immediate-late gene expression module decodes ERK signal duration. Mol. Syst. Biol., 13,  944  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28947433%5Buid%5D|(abstract)]]  Florian Uhlitz, Anja Sieber, Emanuel Wyler, Raphaela Fritsche-Guenther, Johannes Meisig, Markus Landthaler, Bertram Klinger, Nils Blüthgen, 2017, An immediate-late gene expression module decodes ERK signal duration. Mol. Syst. Biol., 13,  944  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28947433%5Buid%5D|(abstract)]] 
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 Thomas McColgan, Ji Liu, Paula Tuulia Kuokkanen, Catherine Emily Carr, Hermann Wagner, Richard Kempter, 2017, Dipolar extracellular potentials generated by axonal projections. Elife, 6,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28871959%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.7554/eLife.26106|(full text)]]  Thomas McColgan, Ji Liu, Paula Tuulia Kuokkanen, Catherine Emily Carr, Hermann Wagner, Richard Kempter, 2017, Dipolar extracellular potentials generated by axonal projections. Elife, 6,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28871959%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.7554/eLife.26106|(full text)]] 
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-Alexandra-M Reimers, Henning Knoop, Alexander Bockmayr, Ralf Steuer, 2017, Cellular trade-offs and optimal resource allocation during cyanobacterial diurnal growth. Proc. Natl. Acad. Sci. U.S.A., ,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28720699%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1073/pnas.1617508114|(full text)]]  
  
  
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-Janina HesseJan-Hendrik Schleimer, Susanne Schreiber, 2017, Qualitative changes in phase-response curve and synchronization at the saddle-node-loop bifurcationPhys Rev E95,  052203  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28618541%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1103/PhysRevE.95.052203|(full text)]] +Tiziano D'AlbisRichard Kempter, 2017, A single-cell spiking model for the origin of grid-cell patterns. PLoS Comput. Biol., 13,  e1005782  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28968386%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pcbi.1005782|(full text)]] 
  
  
-Guido HermeyNils BlüthgenDietmar Kuhl, 2017, Neuronal activity-regulated alternative mRNA splicing. Int. J. Biochem. Cell Biol., ,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28591617%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.biocel.2017.06.002|(full text)]] +Christoph SchmalJihwan MyungHanspeter Herzel, Grigory Bordyugov, 2017, Moran's I quantifies spatio-temporal pattern formation in neural imaging dataBioinformatics33 3072-3079  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28575207%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1093/bioinformatics/btx351|(full text)]] 
  
  
-Christoph SchmalJihwan Myung, Hanspeter Herzel, Grigory Bordyugov, 2017, Moran's I quantifies spatio-temporal pattern formation in neural imaging dataBioinformatics33,  3072-3079  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28575207%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1093/bioinformatics/btx351|(full text)]] +Benjamin F MaierDirk Brockmann, 2017, Cover time for random walks on arbitrary complex networksPhys Rev E96,  042307  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29347543%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1103/PhysRevE.96.042307|(full text)]] 
  
  
-Lucas BöttcherOlivia Woolley-MezaDirk Brockmann, 2017, Temporal dynamics of online petitionsPLoS ONE12,  e0178062  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28542492%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pone.0178062|(full text)]] +Michael E HughesKatherine C Abruzzi, Ravi Allada, Ron Anafi, Alaaddin Bulak Arpat, Gad Asher, Pierre Baldi, Charissa de Bekker, Deborah Bell-PedersenJustin Blau, Steve Brown, M Fernanda Ceriani, Zheng Chen, Joanna C Chiu, Juergen Cox, Alexander M Crowell, Jason P DeBruyne, Derk-Jan Dijk, Luciano DiTacchio, Francis J Doyle, Giles E Duffield, Jay C Dunlap, Kristin Eckel-Mahan, Karyn A Esser, Garret A FitzGerald, Daniel B Forger, Lauren J Francey, Ying-Hui Fu, Frédéric Gachon, David Gatfield, Paul de Goede, Susan S Golden, Carla Green, John Harer, Stacey Harmer, Jeff Haspel, Michael H Hastings, Hanspeter Herzel, Erik D Herzog, Christy Hoffmann, Christian Hong, Jacob J Hughey, Jennifer M Hurley, Horacio O de la Iglesia, Carl Johnson, Steve A Kay, Nobuya Koike, Karl Kornacker, Achim Kramer, Katja Lamia, Tanya Leise, Scott A Lewis, Jiajia Li, Xiaodong Li, Andrew C Liu, Jennifer J Loros, Tami A Martino, Jerome S Menet, Martha Merrow, Andrew J Millar, Todd Mockler, Felix Naef, Emi Nagoshi, Michael N Nitabach, Maria Olmedo, Dmitri A Nusinow, Louis J Ptáček, David Rand, Akhilesh B Reddy, Maria S Robles, Till Roenneberg, Michael Rosbash, Marc D Ruben, Samuel S C Rund, Aziz Sancar, Paolo Sassone-Corsi, Amita Sehgal, Scott Sherrill-Mix, Debra J Skene, Kai-Florian Storch, Joseph S Takahashi, Hiroki R Ueda, Han Wang, Charles Weitz, Pål O Westermark, Herman Wijnen, Ying Xu, Gang Wu, Seung-Hee Yoo, Michael Young, Eric Erquan Zhang, Tomasz Zielinski, John B Hogenesch, 2017, Guidelines for Genome-Scale Analysis of Biological Rhythms. J. BiolRhythms32,  380-393  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29098954%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1177/0748730417728663|(full text)]] 
  
  
-Marianne GründelHenning KnoopRalf Steuer, 2017, Activity and functional properties of the isocitrate lyase in the cyanobacterium Cyanothece spPCC 7424Microbiology (Reading, Engl.)163,  731-744  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28516845%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1099/mic.0.000459|(full text)]] +Guido HermeyNils BlüthgenDietmar Kuhl, 2017, Neuronal activity-regulated alternative mRNA splicingIntJ. Biochem. Cell Biol., 91,  184-193  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28591617%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.biocel.2017.06.002|(full text)]] 
  
  
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-Pamela RiemerMattias RydenfeltMatthias Marks, Karen van Eunen, Kathrin Thedieck, Bernhard G Herrmann, Nils Blüthgen, Christine Sers, Markus Morkel, 2017, Oncogenic β-catenin and PIK3CA instruct network states and cancer phenotypes in intestinal organoids. J. Cell Biol., 216,  1567-1577  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28442534%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1083/jcb.201610058|(full text)]] +Janina HesseJan-Hendrik SchleimerSusanne Schreiber, 2017, Qualitative changes in phase-response curve and synchronization at the saddle-node-loop bifurcationPhys Rev E95,  052203  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28618541%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1103/PhysRevE.95.052203|(full text)]] 
  
  
-Gregor MönkeElena CristianoAna Finzel, Dhana Friedrich, Hanspeter Herzel, Martin Falcke, Alexander Loewer, 2017, Excitability in the p53 network mediates robust signaling with tunable activation thresholds in single cellsSci Rep7,  46571  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28417973%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/srep46571|(full text)]] +Marianne GründelHenning KnoopRalf Steuer, 2017, Activity and functional properties of the isocitrate lyase in the cyanobacterium Cyanothece spPCC 7424. Microbiology (Reading, Engl.)163,  731-744  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28516845%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1099/mic.0.000459|(full text)]] 
  
  
-Jorge JaramilloRichard Kempter, 2017, Phase precession: a neural code underlying episodic memory? Curr. Opin. Neurobiol., 43,  130-138  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28390862%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.conb.2017.02.006|(full text)]] +Nils BlüthgenMirjam van Bentum, Barbara Merz, Dietmar Kuhl, Guido Hermey, 2017, Profiling the MAPK/ERK dependent and independent activity regulated transcriptional programs in the murine hippocampus in vivoSci Rep7,  45101  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28349920%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/srep45101|(full text)]] 
  
  
-Federica EduatiVictoria Doldàn-MartelliBertram KlingerThomas CokelaerAnja SieberFiona KogeraMathurin DorelMathew J GarnettNils BlüthgenJulio Saez-Rodriguez, 2017, Drug Resistance Mechanisms in Colorectal Cancer Dissected with Cell Type-Specific Dynamic Logic ModelsCancer Res., 77,  3364-3375  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28381545%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1158/0008-5472.CAN-17-0078|(full text)]] +Yinxiu ZhanLuca MarianiIros BarozziEdda G SchulzNils BlüthgenMichael StadlerGuido TianaLuca Giorgetti2017Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomesGenome Res., 27,  479-490  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28057745%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1101/gr.212803.116|(full text)]] 
  
  
-Nils BlüthgenMirjam van BentumBarbara MerzDietmar KuhlGuido Hermey, 2017, Profiling the MAPK/ERK dependent and independent activity regulated transcriptional programs in the murine hippocampus in vivoSci Rep7,  45101  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28349920%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/srep45101|(full text)]] +Federica EduatiVictoria Doldàn-MartelliBertram KlingerThomas Cokelaer, Anja Sieber, Fiona Kogera, Mathurin Dorel, Mathew J Garnett, Nils BlüthgenJulio Saez-Rodriguez, 2017, Drug Resistance Mechanisms in Colorectal Cancer Dissected with Cell Type-Specific Dynamic Logic Models. Cancer Res., 77,  3364-3375  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28381545%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1158/0008-5472.CAN-17-0078|(full text)]] 
  
  
-Flavio IannelliAndreas KoherDirk BrockmannPhilipp HövelIgor M Sokolov, 2017, Effective distances for epidemics spreading on complex networksPhys Rev E95,  012313  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28208446%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1103/PhysRevE.95.012313|(full text)]] +Pamela RiemerMattias RydenfeltMatthias MarksKaren van EunenKathrin Thedieck, Bernhard G Herrmann, Nils Blüthgen, Christine Sers, Markus Morkel, 2017, Oncogenic β-catenin and PIK3CA instruct network states and cancer phenotypes in intestinal organoids. J. Cell Biol., 216,  1567-1577  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28442534%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1083/jcb.201610058|(full text)]] 
  
  
-Kevin ThurleyChristopher HerbstFelix WesenerBarbara Koller, Thomas Wallach, Bert Maier, Achim Kramer, Pål O Westermark, 2017, Principles for circadian orchestration of metabolic pathways. Proc. Natl. Acad. Sci. U.S.A., 114 1572-1577  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28159888%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1073/pnas.1613103114|(full text)]] +Alexandra-M ReimersHenning KnoopAlexander BockmayrRalf Steuer, 2017, Cellular trade-offs and optimal resource allocation during cyanobacterial diurnal growth. Proc. Natl. Acad. Sci. U.S.A., ,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28720699%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1073/pnas.1617508114|(full text)]] 
  
  
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-Martina MichalikovaMichiel W H RemmeRichard Kempter, 2017, Spikelets in Pyramidal Neurons: Action Potentials Initiated in the Axon Initial Segment That Do Not Activate the Soma. PLoS Comput. Biol., 13,  e1005237  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28068338%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pcbi.1005237|(full text)]] +Flavio IannelliAndreas KoherDirk Brockmann, Philipp Hövel, Igor M Sokolov, 2017, Effective distances for epidemics spreading on complex networksPhys Rev E95,  012313  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28208446%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1103/PhysRevE.95.012313|(full text)]] 
  
  
-Yinxiu ZhanLuca MarianiIros Barozzi, Edda G Schulz, Nils Blüthgen, Michael Stadler, Guido Tiana, Luca Giorgetti, 2017, Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomesGenome Res., 27,  479-490  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28057745%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1101/gr.212803.116|(full text)]] +Martina MichalikovaMichiel W H RemmeRichard Kempter, 2017, Spikelets in Pyramidal Neurons: Action Potentials Initiated in the Axon Initial Segment That Do Not Activate the Soma. PLoS ComputBiol., 13,  e1005237  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28068338%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pcbi.1005237|(full text)]] 
  
  
 David Malatinszky, Ralf Steuer, Patrik R Jones, 2017, A Comprehensively Curated Genome-Scale Two-Cell Model for the Heterocystous Cyanobacterium Anabaena sp. PCC 7120. Plant Physiol., 173,  509-523  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27899536%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1104/pp.16.01487|(full text)]]  David Malatinszky, Ralf Steuer, Patrik R Jones, 2017, A Comprehensively Curated Genome-Scale Two-Cell Model for the Heterocystous Cyanobacterium Anabaena sp. PCC 7120. Plant Physiol., 173,  509-523  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27899536%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1104/pp.16.01487|(full text)]] 
 +
 +
 +Kevin Thurley, Christopher Herbst, Felix Wesener, Barbara Koller, Thomas Wallach, Bert Maier, Achim Kramer, Pål O Westermark, 2017, Principles for circadian orchestration of metabolic pathways. Proc. Natl. Acad. Sci. U.S.A., 114,  1572-1577  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28159888%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1073/pnas.1613103114|(full text)]] 
 +
 +
 +Rukeia El-Athman, Nikolai N Genov, Jeannine Mazuch, Kaiyang Zhang, Yong Yu, Luise Fuhr, Mónica Abreu, Yin Li, Thomas Wallach, Achim Kramer, Clemens A Schmitt, Angela Relógio, 2017, The Ink4a/Arf locus operates as a regulator of the circadian clock modulating RAS activity. PLoS Biol., 15,  e2002940  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29216180%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pbio.2002940|(full text)]] 
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 +Gregor Mönke, Elena Cristiano, Ana Finzel, Dhana Friedrich, Hanspeter Herzel, Martin Falcke, Alexander Loewer, 2017, Excitability in the p53 network mediates robust signaling with tunable activation thresholds in single cells. Sci Rep, 7,  46571  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28417973%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1038/srep46571|(full text)]] 
 +
 +
 +Jorge Jaramillo, Richard Kempter, 2017, Phase precession: a neural code underlying episodic memory? Curr. Opin. Neurobiol., 43,  130-138  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28390862%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.conb.2017.02.006|(full text)]] 
  
  
 Katharina Anna Wilmes, Jan-Hendrik Schleimer, Susanne Schreiber, 2017, Spike-timing dependent inhibitory plasticity to learn a selective gating of backpropagating action potentials. Eur. J. Neurosci., 45,  1032-1043  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27374316%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1111/ejn.13326|(full text)]]  Katharina Anna Wilmes, Jan-Hendrik Schleimer, Susanne Schreiber, 2017, Spike-timing dependent inhibitory plasticity to learn a selective gating of backpropagating action potentials. Eur. J. Neurosci., 45,  1032-1043  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=27374316%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1111/ejn.13326|(full text)]] 
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 +Bruno Christ, Uta Dahmen, Karl-Heinz Herrmann, Matthias König, Jürgen R Reichenbach, Tim Ricken, Jana Schleicher, Lars Ole Schwen, Sebastian Vlaic, Navina Waschinsky, 2017, Computational Modeling in Liver Surgery. Front Physiol, 8,  906  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=29249974%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.3389/fphys.2017.00906|(full text)]] 
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 +
 +Lucas Böttcher, Olivia Woolley-Meza, Dirk Brockmann, 2017, Temporal dynamics of online petitions. PLoS ONE, 12,  e0178062  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=28542492%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1371/journal.pone.0178062|(full text)]] 
  
 === 2016 === === 2016 ===