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groups:nils:publications [2014/08/22 18:00] – nilsgroups:nils:publications [2016/03/03 12:20] (current) – external edit 127.0.0.1
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 + ==== Publications ====
 === 2014 === === 2014 ===
-Petzoldt Astrid G, Lee Yü-Hien, Khorramshahi Omid, Reynolds Eric, Plested Andrew J R, Herzel Hanspeter, Sigrist Stephan J, 2014, Gating Characteristics Control Glutamate Receptor Distribution and Trafficking In Vivo. Curr. Biol., ,   [[http://dx.doi.org/S0960-9822(14)00914-2|(full text)]] +Astrid G Petzoldt, Yü-Hien Lee, Omid Khorramshahi, Eric Reynolds, Andrew J R Plested, Hanspeter Herzel, Stephan J Sigrist, 2014, Gating Characteristics Control Glutamate Receptor Distribution and Trafficking In Vivo. Curr. Biol., ,    [[http://dx.doi.org/10.1016/j.cub.2014.07.051|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=25131677%5Buid%5D|(abstract)]] 
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-Ananthasubramaniam Bharath, Herzel Hanspeter, 2014, Positive feedback promotes oscillations in negative feedback loops. PLoS ONE, 9,  e104761 [[http://dx.doi.org/10.1371/journal.pone.0104761|(full text)]] +Bharath Ananthasubramaniam, Hanspeter Herzel, 2014, Positive feedback promotes oscillations in negative feedback loops. PLoS ONE, 9,  e104761  [[http://dx.doi.org/10.1371/journal.pone.0104761|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=25126951%5Buid%5D|(abstract)]] 
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-Klinger Bertram, Blüthgen Nils, 2014, Consequences of feedback in signal transduction for targeted therapies. Biochem. Soc. Trans., 42,  770-5 [[http://dx.doi.org/10.1042/BST20140130|(full text)]] +Bertram Klinger, Nils Blüthgen, 2014, Consequences of feedback in signal transduction for targeted therapies. Biochem. Soc. Trans., 42,  770-5  [[http://dx.doi.org/10.1042/BST20140130|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=25109956%5Buid%5D|(abstract)]] 
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-Lehmann Robert, Machné Rainer, Herzel Hanspeter, 2014, The structural code of cyanobacterial genomes. Nucleic Acids Res., 42,  8873-83 [[http://dx.doi.org/10.1093/nar/gku641|(full text)]] +Robert Lehmann, Rainer Machné, Hanspeter Herzel, 2014, The structural code of cyanobacterial genomes. Nucleic Acids Res., 42,  8873-83  [[http://dx.doi.org/10.1093/nar/gku641|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=25056315%5Buid%5D|(abstract)]] 
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-Korenčič Anja, Košir Rok, Bordyugov Grigory, Lehmann Robert, Rozman Damjana, Herzel Hanspeter, 2014, Timing of circadian genes in mammalian tissues. Sci Rep, 4,  5782 [[http://dx.doi.org/10.1038/srep05782|(full text)]] +Anja Korenčič, Rok Košir, Grigory Bordyugov, Robert Lehmann, Damjana Rozman, Hanspeter Herzel, 2014, Timing of circadian genes in mammalian tissues. Sci Rep, 4,  5782  [[http://dx.doi.org/10.1038/srep05782|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=25048020%5Buid%5D|(abstract)]] 
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-Reifenstein Eric, Stemmler Martin, Herz Andreas V M, Kempter Richard, Schreiber Susanne, 2014, Movement dependence and layer specificity of entorhinal phase precession in two-dimensional environments. PLoS ONE, 9,  e100638 [[http://dx.doi.org/10.1371/journal.pone.0100638|(full text)]] +Eric Reifenstein, Martin Stemmler, Andreas V M Herz, Richard Kempter, Susanne Schreiber, 2014, Movement dependence and layer specificity of entorhinal phase precession in two-dimensional environments. PLoS ONE, 9,  e100638  [[http://dx.doi.org/10.1371/journal.pone.0100638|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24959748%5Buid%5D|(abstract)]] 
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-Beck Christian, Hertel Stefanie, Rediger Anne, Lehmann Robert, Wiegard Anika, Kölsch Adrian, Heilmann Beate, Georg Jens, Hess Wolfgang R, Axmann Ilka M, 2014, Daily Expression Pattern of Protein-Encoding Genes and Small Noncoding RNAs in Synechocystis sp. Strain PCC 6803. Appl. Environ. Microbiol., 80,  5195-206 [[http://dx.doi.org/10.1128/AEM.01086-14|(full text)]] +Christian Beck, Stefanie Hertel, Anne Rediger, Robert Lehmann, Anika Wiegard, Adrian Kölsch, Beate Heilmann, Jens Georg, Wolfgang R Hess, Ilka M Axmann, 2014, Daily Expression Pattern of Protein-Encoding Genes and Small Noncoding RNAs in Synechocystis sp. Strain PCC 6803. Appl. Environ. Microbiol., 80,  5195-206  [[http://dx.doi.org/10.1128/AEM.01086-14|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24928881%5Buid%5D|(abstract)]] 
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-Killig Monica, Friedrichs Birte, Meisig Johannes, Gentilini Chiara, Blüthgen Nils, Loddenkemper Christoph, Labopin Myriam, Basara Nadezda, Pfrepper Christian, Niederwieser Dietger W, Uharek Lutz, Romagnani Chiara, 2014, Tracking in vivo dynamics of NK cells transferred in patients undergoing stem cell transplantation. Eur. J. Immunol., ,   [[http://dx.doi.org/10.1002/eji.201444586|(full text)]] +Monica Killig, Birte Friedrichs, Johannes Meisig, Chiara Gentilini, Nils Blüthgen, Christoph Loddenkemper, Myriam Labopin, Nadezda Basara, Christian Pfrepper, Dietger W Niederwieser, Lutz Uharek, Chiara Romagnani, 2014, Tracking in vivo dynamics of NK cells transferred in patients undergoing stem cell transplantation. Eur. J. Immunol., ,    [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24895051%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1002/eji.201444586|(full text)]] 
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-Relógio Angela, Thomas Philippe, Medina-Pérez Paula, Reischl Silke, Bervoets Sander, Gloc Ewa, Riemer Pamela, Mang-Fatehi Shila, Maier Bert, Schäfer Reinhold, Leser Ulf, Herzel Hanspeter, Kramer Achim, Sers Christine, 2014, Ras-mediated deregulation of the circadian clock in cancer. PLoS Genet., 10,  e1004338 [[http://dx.doi.org/10.1371/journal.pgen.1004338|(full text)]] +Angela Relógio, Philippe Thomas, Paula Medina-Pérez, Silke Reischl, Sander Bervoets, Ewa Gloc, Pamela Riemer, Shila Mang-Fatehi, Bert Maier, Reinhold Schäfer, Ulf Leser, Hanspeter Herzel, Achim Kramer, Christine Sers, 2014, Ras-mediated deregulation of the circadian clock in cancer. PLoS Genet., 10,  e1004338  [[http://dx.doi.org/10.1371/journal.pgen.1004338|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24875049%5Buid%5D|(abstract)]] 
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-Jaramillo Jorge, Schmidt Robert, Kempter Richard, 2014, Modeling inheritance of phase precession in the hippocampal formation. J. Neurosci., 34,  7715-31 [[http://dx.doi.org/10.1523/JNEUROSCI.5136-13.2014|(full text)]] +Jorge Jaramillo, Robert Schmidt, Richard Kempter, 2014, Modeling inheritance of phase precession in the hippocampal formation. J. Neurosci., 34,  7715-31  [[http://dx.doi.org/10.1523/JNEUROSCI.5136-13.2014|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24872575%5Buid%5D|(abstract)]] 
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-Roemschied Frederic A, Eberhard Monika Jb, Schleimer Jan-Hendrik, Ronacher Bernhard, Schreiber Susanne, 2014, Cell-intrinsic mechanisms of temperature compensation in a grasshopper sensory receptor neuron. Elife, 3,  e02078 [[http://dx.doi.org/10.7554/eLife.02078|(full text)]] +Frederic A Roemschied, Monika Jb Eberhard, Jan-Hendrik Schleimer, Bernhard Ronacher, Susanne Schreiber, 2014, Cell-intrinsic mechanisms of temperature compensation in a grasshopper sensory receptor neuron. Elife, 3,  e02078  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24843016%5Buid%5D|(abstract)]] 
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-Telschow Arndt, Hilgenboecker Kirsten, Hammerstein Peter, Werren John H, 2014, Dobzhansky-muller and wolbachia-induced incompatibilities in a diploid genetic system. PLoS ONE, 9,  e95488 [[http://dx.doi.org/10.1371/journal.pone.0095488|(full text)]] +Juliane Manitz, Thomas Kneib, Martin Schlather, Dirk Helbing, Dirk Brockmann, 2014, Origin Detection During Food-borne Disease Outbreaks - A Case Study of the 2011 EHEC/HUS Outbreak in Germany. PLoS Curr, 6,    [[http://dx.doi.org/10.1371/currents.outbreaks.f3fdeb08c5b9de7c09ed9cbcef5f01f2|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24818065%5Buid%5D|(abstract)]] 
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-Ananthasubramaniam Bharath, Herzog Erik D, Herzel Hanspeter, 2014, Timing of neuropeptide coupling determines synchrony and entrainment in the mammalian circadian clock. PLoS Comput. Biol., 10,  e1003565 [[http://dx.doi.org/10.1371/journal.pcbi.1003565|(full text)]] +Arndt Telschow, Kirsten Hilgenboecker, Peter Hammerstein, John H Werren, 2014, Dobzhansky-muller and wolbachia-induced incompatibilities in a diploid genetic system. PLoS ONE, 9,  e95488  [[http://dx.doi.org/10.1371/journal.pone.0095488|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24759973%5Buid%5D|(abstract)]] 
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-Guerreiro Ana C L, Benevento Marco, Lehmann Robert, van Breukelen Bas, Post Harm, Giansanti Piero, Maarten Altelaar A F, Axmann Ilka M, Heck Albert J R, 2014, Daily Rhythms in the Cyanobacterium Synechococcus elongatus Probed by High-resolution Mass Spectrometry-based Proteomics Reveals a Small Defined Set of Cyclic Proteins. Mol. Cell Proteomics, 13,  2042-55 [[http://dx.doi.org/10.1074/mcp.M113.035840|(full text)]] +Bharath Ananthasubramaniam, Erik D Herzog, Hanspeter Herzel, 2014, Timing of neuropeptide coupling determines synchrony and entrainment in the mammalian circadian clock. PLoS Comput. Biol., 10,  e1003565  [[http://dx.doi.org/10.1371/journal.pcbi.1003565|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24743470%5Buid%5D|(abstract)]] 
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-Zug Roman, Hammerstein Peter, 2014, Bad guys turned nice? A critical assessment of Wolbachia mutualisms in arthropod hosts. Biol Rev Camb Philos Soc, ,   [[http://dx.doi.org/10.1111/brv.12098|(full text)]] +Ana C L Guerreiro, Marco Benevento, Robert Lehmann, Bas van Breukelen, Harm Post, Piero Giansanti, A F Maarten Altelaar, Ilka M Axmann, Albert J R Heck, 2014, Daily Rhythms in the Cyanobacterium Synechococcus elongatus Probed by High-resolution Mass Spectrometry-based Proteomics Reveals a Small Defined Set of Cyclic Proteins. Mol. Cell Proteomics, 13,  2042-55  [[http://dx.doi.org/10.1074/mcp.M113.035840|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24677030%5Buid%5D|(abstract)]] 
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-Schulz Edda G, Meisig Johannes, Nakamura Tomonori, Okamoto Ikuhiro, Sieber Anja, Picard Christel, Borensztein Maud, Saitou Mitinori, Blüthgen Nils, Heard Edith, 2014, The two active X chromosomes in female ESCs block exit from the pluripotent state by modulating the ESC signaling network. Cell Stem Cell, 14,  203-16 [[http://dx.doi.org/10.1016/j.stem.2013.11.022|(full text)]] +Roman Zug, Peter Hammerstein, 2014, Bad guys turned nice? A critical assessment of Wolbachia mutualisms in arthropod hosts. Biol Rev Camb Philos Soc, ,    [[http://dx.doi.org/10.1111/brv.12098|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24618033%5Buid%5D|(abstract)]] 
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-Snijder Joost, Burnley Rebecca J, Wiegard Anika, Melquiond Adrien S J, Bonvin Alexandre M J J, Axmann Ilka M, Heck Albert J R, 2014, Insight into cyanobacterial circadian timing from structural details of the KaiB-KaiC interaction. Proc. Natl. Acad. Sci. U.S.A., 111,  1379-84 [[http://dx.doi.org/10.1073/pnas.1314326111|(full text)]] +Philippe Lemey, Andrew Rambaut, Trevor Bedford, Nuno Faria, Filip Bielejec, Guy Baele, Colin A Russell, Derek J Smith, Oliver G Pybus, Dirk Brockmann, Marc A Suchard, 2014, Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2. PLoS Pathog., 10,  e1003932  [[http://dx.doi.org/10.1371/journal.ppat.1003932|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24586153%5Buid%5D|(abstract)]] 
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-Werner Gijsbert D A, Strassmann Joan E, Ivens Aniek B F, Engelmoer Daniel J P, Verbruggen Erik, Queller David C, Noë Ronald, Johnson Nancy Collins, Hammerstein Peter, Kiers E Toby, 2014, Evolution of microbial markets. Proc. Natl. Acad. Sci. U.S.A., 111,  1237-44 [[http://dx.doi.org/10.1073/pnas.1315980111|(full text)]] +Edda G Schulz, Johannes Meisig, Tomonori Nakamura, Ikuhiro Okamoto, Anja Sieber, Christel Picard, Maud Borensztein, Mitinori Saitou, Nils Blüthgen, Edith Heard, 2014, The two active X chromosomes in female ESCs block exit from the pluripotent state by modulating the ESC signaling network. Cell Stem Cell, 14,  203-16  [[http://dx.doi.org/10.1016/j.stem.2013.11.022|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24506884%5Buid%5D|(abstract)]] 
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-Gottstein Willi, Müller Stefan, Herzel Hanspeter, Steuer Ralf, 2014, Elucidating the adaptation and temporal coordination of metabolic pathways using in-silico evolution. BioSystems, 117,  68-76 [[http://dx.doi.org/10.1016/j.biosystems.2013.12.006|(full text)]] +Joost Snijder, Rebecca J Burnley, Anika Wiegard, Adrien S J Melquiond, Alexandre M J J Bonvin, Ilka M Axmann, Albert J R Heck, 2014, Insight into cyanobacterial circadian timing from structural details of the KaiB-KaiC interaction. Proc. Natl. Acad. Sci. U.S.A., 111,  1379-84  [[http://dx.doi.org/10.1073/pnas.1314326111|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24474762%5Buid%5D|(abstract)]] 
-       +
  
-Axmann Ilka M, Hertel Stefanie, Wiegard Anika, Dörrich Anja K, Wilde Annegret, 2014, Diversity of KaiC-based timing systems in marine Cyanobacteria. Mar Genomics, 14,  3-16 [[http://dx.doi.org/10.1016/j.margen.2013.12.006|(full text)]] +Gijsbert D A Werner, Joan E Strassmann, Aniek B F Ivens, Daniel J P Engelmoer, Erik Verbruggen, David C Queller, Ronald Noë, Nancy Collins Johnson, Peter Hammerstein, E Toby Kiers, 2014, Evolution of microbial markets. Proc. Natl. Acad. Sci. U.S.A., 111,  1237-44  [[http://dx.doi.org/10.1073/pnas.1315980111|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24474743%5Buid%5D|(abstract)]] 
-       +
  
-Müller Stefan, Regensburger Georg, Steuer Ralf, 2014, Enzyme allocation problems in kinetic metabolic networks: optimal solutions are elementary flux modes. J. Theor. Biol., 347,  182-90 [[http://dx.doi.org/10.1016/j.jtbi.2013.11.015|(full text)]] +Willi Gottstein, Stefan Müller, Hanspeter Herzel, Ralf Steuer, 2014, Elucidating the adaptation and temporal coordination of metabolic pathways using in-silico evolution. BioSystems, 117,  68-76  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24440082%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.biosystems.2013.12.006|(full text)]]  
-       + 
 +Ilka M Axmann, Stefanie Hertel, Anika Wiegard, Anja K Dörrich, Annegret Wilde, 2014, Diversity of KaiC-based timing systems in marine Cyanobacteria. Mar Genomics, 14,  3-16  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24388874%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.margen.2013.12.006|(full text)]]  
 + 
 +Stefan Müller, Georg Regensburger, Ralf Steuer, 2014, Enzyme allocation problems in kinetic metabolic networks: optimal solutions are elementary flux modes. J. Theor. Biol., 347,  182-90  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24295962%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.jtbi.2013.11.015|(full text)]] 
  
  
 === 2013 === === 2013 ===
-Müller Stefan, Regensburger Georg, Steuer Ralf, 2014, Enzyme allocation problems in kinetic metabolic networks: optimal solutions are elementary flux modes. J. Theor. Biol., 347,  182-90 [[http://dx.doi.org/10.1016/j.jtbi.2013.11.015|(full text)]] +Dirk Brockmann, Dirk Helbing, 2013, The hidden geometry of complex, network-driven contagion phenomena. Science, 342,  1337-42  [[http://dx.doi.org/10.1126/science.1245200|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24337289%5Buid%5D|(abstract)]]  
-       + 
 +Stefan Müller, Georg Regensburger, Ralf Steuer, 2014, Enzyme allocation problems in kinetic metabolic networks: optimal solutions are elementary flux modes. J. Theor. Biol., 347,  182-90  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24295962%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1016/j.jtbi.2013.11.015|(full text)]]  
 + 
 +Ekaterina Zhuchkova, Michiel W H Remme, Susanne Schreiber, 2013, Somatic versus dendritic resonance: differential filtering of inputs through non-uniform distributions of active conductances. PLoS ONE, 8,  e78908  [[http://dx.doi.org/10.1371/journal.pone.0078908|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24223864%5Buid%5D|(abstract)]]  
 + 
 +Stefanie Hertel, Reimo Zoschke, Laura Neumann, Yujiao Qu, Ilka M Axmann, Christian Schmitz-Linneweber, 2013, Multiple checkpoints for the expression of the chloroplast-encoded splicing factor MatK. Plant Physiol., 163,  1686-98  [[http://dx.doi.org/10.1104/pp.113.227579|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24174638%5Buid%5D|(abstract)]]  
 + 
 +Guido Hermey, Claudia Mahlke, Jakob J Gutzmann, Jörg Schreiber, Nils Blüthgen, Dietmar Kuhl, 2013, Genome-wide profiling of the activity-dependent hippocampal transcriptome. PLoS ONE, 8,  e76903  [[http://dx.doi.org/10.1371/journal.pone.0076903|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24146943%5Buid%5D|(abstract)]]  
 + 
 +Lloyd P Sanders, Bo Söderberg, Dirk Brockmann, Tobias Ambjörnsson, 2013, Perturbative solution to susceptible-infected-susceptible epidemics on networks. Phys Rev E Stat Nonlin Soft Matter Phys, 88,  032713  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=24125300%5Buid%5D|(abstract)]]  
 + 
 +Olivia Woolley-Meza, Daniel Grady, Christian Thiemann, James P Bagrow, Dirk Brockmann, 2013, Eyjafjallajökull and 9/11: the impact of large-scale disasters on worldwide mobility. PLoS ONE, 8,  e69829  [[http://dx.doi.org/10.1371/journal.pone.0069829|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23950904%5Buid%5D|(abstract)]]  
 + 
 +Henning Knoop, Marianne Gründel, Yvonne Zilliges, Robert Lehmann, Sabrina Hoffmann, Wolfgang Lockau, Ralf Steuer, 2013, Flux balance analysis of cyanobacterial metabolism: the metabolic network of Synechocystis sp. PCC 6803. PLoS Comput. Biol., 9,  e1003081  [[http://dx.doi.org/10.1371/journal.pcbi.1003081|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23843751%5Buid%5D|(abstract)]]  
 + 
 +Timor Glatzer, Monica Killig, Johannes Meisig, Isabelle Ommert, Merlin Luetke-Eversloh, Marina Babic, Daniela Paclik, Nils Blüthgen, Rainer Seidl, Claudia Seifarth, Jörn Gröne, Minoo Lenarz, Katharina Stölzel, Dominik Fugmann, Angel Porgador, Anja Hauser, Alexander Karlas, Chiara Romagnani, 2013, RORγt⁺ innate lymphoid cells acquire a proinflammatory program upon engagement of the activating receptor NKp44. Immunity, 38,  1223-35  [[http://dx.doi.org/10.1016/j.immuni.2013.05.013|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23791642%5Buid%5D|(abstract)]]  
 + 
 +Kajetan Bentele, Paul Saffert, Robert Rauscher, Zoya Ignatova, Nils Blüthgen, 2013, Efficient translation initiation dictates codon usage at gene start. Mol. Syst. Biol., 9,  675  [[http://dx.doi.org/10.1038/msb.2013.32|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23774758%5Buid%5D|(abstract)]]  
 + 
 +Bertram Klinger, Anja Sieber, Raphaela Fritsche-Guenther, Franziska Witzel, Leanne Berry, Dirk Schumacher, Yibing Yan, Pawel Durek, Mark Merchant, Reinhold Schäfer, Christine Sers, Nils Blüthgen, 2013, Network quantification of EGFR signaling unveils potential for targeted combination therapy. Mol. Syst. Biol., 9,  673  [[http://dx.doi.org/10.1038/msb.2013.29|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23752269%5Buid%5D|(abstract)]]  
 + 
 +Catherine Carr, Sahil Shah, Go Ashida, Thomas McColgan, Hermann Wagner, Paula T Kuokkanen, Richard Kempter, Christine Köppl, 2013, Maps of ITD in the nucleus laminaris of the barn owl. Adv. Exp. Med. Biol., 787,  215-22  [[http://dx.doi.org/10.1007/978-1-4614-1590-9_24|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23716226%5Buid%5D|(abstract)]]  
 + 
 +Christian T Herbst, Hanspeter Herzel, Jan G Svec, Megan T Wyman, W Tecumseh Fitch, 2013, Visualization of system dynamics using phasegrams. J R Soc Interface, 10,  20130288  [[http://dx.doi.org/10.1098/rsif.2013.0288|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23697715%5Buid%5D|(abstract)]]  
 + 
 +Robert Lehmann, Rainer Machné, Jens Georg, Manuela Benary, Ilka Axmann, Ralf Steuer, 2013, How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis. BMC Bioinformatics, 14,  133  [[http://dx.doi.org/10.1186/1471-2105-14-133|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23601192%5Buid%5D|(abstract)]]  
 + 
 +Pål O Westermark, Hanspeter Herzel, 2013, Mechanism for 12 hr rhythm generation by the circadian clock. Cell Rep, 3,  1228-38  [[http://dx.doi.org/10.1016/j.celrep.2013.03.013|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23583178%5Buid%5D|(abstract)]]  
 + 
 +Paula T Kuokkanen, Go Ashida, Catherine E Carr, Hermann Wagner, Richard Kempter, 2013, Linear summation in the barn owl's brainstem underlies responses to interaural time differences. J. Neurophysiol., 110,  117-30  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23554438%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1152/jn.00410.2012|(full text)]]  
 + 
 +Adrián E Granada, Grigory Bordyugov, Achim Kramer, Hanspeter Herzel, 2013, Human chronotypes from a theoretical perspective. PLoS ONE, 8,  e59464  [[http://dx.doi.org/10.1371/journal.pone.0059464|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23544070%5Buid%5D|(abstract)]]  
 + 
 +Stefanie Hertel, Christian Brettschneider, Ilka M Axmann, 2013, Revealing a two-loop transcriptional feedback mechanism in the cyanobacterial circadian clock. PLoS Comput. Biol., 9,  e1002966  [[http://dx.doi.org/10.1371/journal.pcbi.1002966|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23516349%5Buid%5D|(abstract)]]  
 + 
 +Anika Wiegard, Anja K Dörrich, Hans-Tobias Deinzer, Christian Beck, Annegret Wilde, Julia Holtzendorff, Ilka M Axmann, 2013, Biochemical analysis of three putative KaiC clock proteins from Synechocystis sp. PCC 6803 suggests their functional divergence. Microbiology (Reading, Engl.), 159,  948-58  [[http://dx.doi.org/10.1099/mic.0.065425-0|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23449916%5Buid%5D|(abstract)]]  
 + 
 +Maria Pangalos, José R Donoso, Jochen Winterer, Aleksandar R Zivkovic, Richard Kempter, Nikolaus Maier, Dietmar Schmitz, 2013, Recruitment of oriens-lacunosum-moleculare interneurons during hippocampal ripples. Proc. Natl. Acad. Sci. U.S.A., 110,  4398-403  [[http://dx.doi.org/10.1073/pnas.1215496110|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23440221%5Buid%5D|(abstract)]]  
 + 
 +Benjamin Bossan, Peter Hammerstein, Arnulf Koehncke, 2013, We were all young once: an intragenomic perspective on parent-offspring conflict. Proc. Biol. Sci., 280,  20122637  [[http://dx.doi.org/10.1098/rspb.2012.2637|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23303542%5Buid%5D|(abstract)]]  
 + 
 +Nils Blüthgen, Stefan Legewie, 2013, Robustness of signal transduction pathways. Cell. Mol. Life Sci., 70,  2259-69  [[http://dx.doi.org/10.1007/s00018-012-1162-7|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23007845%5Buid%5D|(abstract)]]  
 + 
 + 
 +=== 2012 === 
 +Franziska Witzel, Louise Maddison, Nils Blüthgen, 2012, How scaffolds shape MAPK signaling: what we know and opportunities for systems approaches. Front Physiol, 3,  475  [[http://dx.doi.org/10.3389/fphys.2012.00475|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23267331%5Buid%5D|(abstract)]]  
 + 
 +Anja Korenčič, Grigory Bordyugov, Rok Košir, Damjana Rozman, Marko Goličnik, Hanspeter Herzel, 2012, The interplay of cis-regulatory elements rules circadian rhythms in mouse liver. PLoS ONE, 7,  e46835  [[http://dx.doi.org/10.1371/journal.pone.0046835|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23144788%5Buid%5D|(abstract)]]  
 + 
 +Nils Blüthgen, Stefan Legewie, 2013, Robustness of signal transduction pathways. Cell. Mol. Life Sci., 70,  2259-69  [[http://dx.doi.org/10.1007/s00018-012-1162-7|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23007845%5Buid%5D|(abstract)]]  
 + 
 +Dmitry Zarubin, Ekaterina Zhuchkova, Susanne Schreiber, 2012, Effects of cooperative ion-channel interactions on the dynamics of excitable membranes. Phys Rev E Stat Nonlin Soft Matter Phys, 85,  061904  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=23005124%5Buid%5D|(abstract)]]  
 + 
 +Hanna Bendfeldt, Manuela Benary, Tobias Scheel, Kerstin Steinbrink, Andreas Radbruch, Hanspeter Herzel, Ria Baumgrass, 2012, IL-2 Expression in Activated Human Memory FOXP3(+) Cells Critically Depends on the Cellular Levels of FOXP3 as Well as of Four Transcription Factors of  T Cell Activation. Front Immunol, 3,  264  [[http://dx.doi.org/10.3389/fimmu.2012.00264|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22969764%5Buid%5D|(abstract)]]  
 + 
 +Jari Kämäräinen, Henning Knoop, Natalie J Stanford, Fernando Guerrero, M Kalim Akhtar, Eva-Mari Aro, Ralf Steuer, Patrik R Jones, 2012, Physiological tolerance and stoichiometric potential of cyanobacteria for hydrocarbon fuel production. J. Biotechnol., 162,  67-74  [[http://dx.doi.org/10.1016/j.jbiotec.2012.07.193|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22954891%5Buid%5D|(abstract)]]  
 + 
 +Go Ashida, Kazuo Funabiki, Paula T Kuokkanen, Richard Kempter, Catherine E Carr, 2012, Signal-to-noise ratio in the membrane potential of the owl's auditory coincidence detectors. J. Neurophysiol., 108,  2837-45  [[http://dx.doi.org/10.1152/jn.00366.2012|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22933726%5Buid%5D|(abstract)]]  
 + 
 +Jörn Matthias Schmiedel, Ilka Maria Axmann, Stefan Legewie, 2012, Multi-target regulation by small RNAs synchronizes gene expression thresholds and may enhance ultrasensitive behavior. PLoS ONE, 7,  e42296  [[http://dx.doi.org/10.1371/journal.pone.0042296|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22927924%5Buid%5D|(abstract)]]  
 + 
 +Michael Fähling, Anja Bondke Persson, Bertram Klinger, Edgar Benko, Andreas Steege, Mumtaz Kasim, Andreas Patzak, Pontus B Persson, Gunter Wolf, Nils Blüthgen, Ralf Mrowka, 2012, Multilevel regulation of HIF-1 signaling by TTP. Mol. Biol. Cell, 23,  4129-41  [[http://dx.doi.org/10.1091/mbc.E11-11-0949|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22918951%5Buid%5D|(abstract)]]  
 + 
 +Iwona Stelniec-Klotz, Stefan Legewie, Oleg Tchernitsa, Franziska Witzel, Bertram Klinger, Christine Sers, Hanspeter Herzel, Nils Blüthgen, Reinhold Schäfer, 2012, Reverse engineering a hierarchical regulatory network downstream of oncogenic KRAS. Mol. Syst. Biol., 8,  601  [[http://dx.doi.org/10.1038/msb.2012.32|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22864383%5Buid%5D|(abstract)]]  
 + 
 +Anne Rediger, René Geissen, Benedikt Steuten, Beate Heilmann, Rolf Wagner, Ilka M Axmann, 2012, 6S RNA - an old issue became blue-green. Microbiology (Reading, Engl.), 158,  2480-91  [[http://dx.doi.org/10.1099/mic.0.058958-0|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22767549%5Buid%5D|(abstract)]]  
 + 
 +Roman Zug, Peter Hammerstein, 2012, Still a host of hosts for Wolbachia: analysis of recent data suggests that 40% of terrestrial arthropod species are infected. PLoS ONE, 7,  e38544  [[http://dx.doi.org/10.1371/journal.pone.0038544|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22685581%5Buid%5D|(abstract)]]  
 + 
 +Daniel Grady, Christian Thiemann, Dirk Brockmann, 2012, Robust classification of salient links in complex networks. Nat Commun, 3,  864  [[http://dx.doi.org/10.1038/ncomms1847|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22643891%5Buid%5D|(abstract)]]  
 + 
 +Roland Schaette, Richard Kempter, 2012, Computational models of neurophysiological correlates of tinnitus. Front Syst Neurosci, 6,  34  [[http://dx.doi.org/10.3389/fnsys.2012.00034|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22586377%5Buid%5D|(abstract)]]  
 + 
 +Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat, Joost Gribnau, Emmanuel Barillot, Nils Blüthgen, Job Dekker, Edith Heard, 2012, Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature, 485,  381-5  [[http://dx.doi.org/10.1038/nature11049|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22495304%5Buid%5D|(abstract)]]  
 + 
 +Richard Kempter, Christian Leibold, György Buzsáki, Kamran Diba, Robert Schmidt, 2012, Quantifying circular-linear associations: hippocampal phase precession. J. Neurosci. Methods, 207,  113-24  [[http://dx.doi.org/10.1016/j.jneumeth.2012.03.007|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22487609%5Buid%5D|(abstract)]]  
 + 
 +Dirk Brockmann, 2012, Complex systems: Spotlight on mobility. Nature, 484,  40-1  [[http://dx.doi.org/10.1038/484040a|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22481350%5Buid%5D|(abstract)]]  
 + 
 +Eric T Reifenstein, Richard Kempter, Susanne Schreiber, Martin B Stemmler, Andreas V M Herz, 2012, Grid cells in rat entorhinal cortex encode physical space with independent firing fields and phase precession at the single-trial level. Proc. Natl. Acad. Sci. U.S.A., 109,  6301-6  [[http://dx.doi.org/10.1073/pnas.1109599109|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22474395%5Buid%5D|(abstract)]]  
 + 
 +Hanna Bendfeldt, Manuela Benary, Tobias Scheel, Stefan Frischbutter, Anna Abajyan, Andreas Radbruch, Hanspeter Herzel, Ria Baumgrass, 2012, Stable IL-2 decision making by endogenous c-Fos amounts in peripheral memory T-helper cells. J. Biol. Chem., 287,  18386-97  [[http://dx.doi.org/10.1074/jbc.M112.358853|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22474330%5Buid%5D|(abstract)]]  
 + 
 +Ralf Steuer, Henning Knoop, Rainer Machné, 2012, Modelling cyanobacteria: from metabolism to integrative models of phototrophic growth. J. Exp. Bot., 63,  2259-74  [[http://dx.doi.org/10.1093/jxb/ers018|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22450165%5Buid%5D|(abstract)]]  
 + 
 +Christian Beck, Henning Knoop, Ilka M Axmann, Ralf Steuer, 2012, The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms. BMC Genomics, 13,  56  [[http://dx.doi.org/10.1186/1471-2164-13-56|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22300633%5Buid%5D|(abstract)]]  
 + 
 +Mariano A Belluscio, Kenji Mizuseki, Robert Schmidt, Richard Kempter, György Buzsáki, 2012, Cross-frequency phase-phase coupling between θ and γ oscillations in the hippocampus. J. Neurosci., 32,  423-35  [[http://dx.doi.org/10.1523/JNEUROSCI.4122-11.2012|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22238079%5Buid%5D|(abstract)]]  
 + 
 + 
 +=== 2011 === 
 +Adrián E Granada, Trinitat Cambras, Antoni Díez-Noguera, Hanspeter Herzel, 2011, Circadian desynchronization. Interface Focus, 1,  153-66  [[http://dx.doi.org/10.1098/rsfs.2010.0002|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22419981%5Buid%5D|(abstract)]]  
 + 
 +Ralf Steuer, Steffen Waldherr, Victor Sourjik, Markus Kollmann, 2011, Robust signal processing in living cells. PLoS Comput. Biol., 7,  e1002218  [[http://dx.doi.org/10.1371/journal.pcbi.1002218|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22215991%5Buid%5D|(abstract)]]  
 + 
 +Angela Relógio, Pal O Westermark, Thomas Wallach, Katja Schellenberg, Achim Kramer, Hanspeter Herzel, 2011, Tuning the mammalian circadian clock: robust synergy of two loops. PLoS Comput. Biol., 7,  e1002309  [[http://dx.doi.org/10.1371/journal.pcbi.1002309|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22194677%5Buid%5D|(abstract)]]  
 + 
 +Nikolaus Maier, Alvaro Tejero-Cantero, Anja L Dorrn, Jochen Winterer, Prateep S Beed, Genela Morris, Richard Kempter, James F A Poulet, Christian Leibold, Dietmar Schmitz, 2011, Coherent phasic excitation during hippocampal ripples. Neuron, 72,  137-52  [[http://dx.doi.org/10.1016/j.neuron.2011.08.016|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21982375%5Buid%5D|(abstract)]]  
 + 
 +Pascal Schulthess, Nils Blüthgen, 2011, From reaction networks to information flow--using modular response analysis to track information in signaling networks. Meth. Enzymol., 500,  397-409  [[http://dx.doi.org/10.1016/B978-0-12-385118-5.00020-7|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21943908%5Buid%5D|(abstract)]]  
 + 
 +Jan Clemens, Olaf Kutzki, Bernhard Ronacher, Susanne Schreiber, Sandra Wohlgemuth, 2011, Efficient transformation of an auditory population code in a small sensory system. Proc. Natl. Acad. Sci. U.S.A., 108,  13812-7  [[http://dx.doi.org/10.1073/pnas.1104506108|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21825132%5Buid%5D|(abstract)]]  
 + 
 +K Laurence Jost, Sebastian Haase, Daniel Smeets, Nadine Schrode, Jörn M Schmiedel, Bianca Bertulat, Hanspeter Herzel, Marion Cremer, M Cristina Cardoso, 2011, 3D-Image analysis platform monitoring relocation of pluripotency genes during reprogramming. Nucleic Acids Res., 39,  e113  [[http://dx.doi.org/10.1093/nar/gkr486|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21700670%5Buid%5D|(abstract)]]  
 + 
 +Anuradha Chauhan, Stephan Lorenzen, Hanspeter Herzel, Samuel Bernard, 2011, Regulation of mammalian cell cycle progression in the regenerating liver. J. Theor. Biol., 283,  103-12  [[http://dx.doi.org/10.1016/j.jtbi.2011.05.026|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21635899%5Buid%5D|(abstract)]]  
 + 
 +Raphaela Fritsche-Guenther, Franziska Witzel, Anja Sieber, Ricarda Herr, Nadine Schmidt, Sandra Braun, Tilman Brummer, Christine Sers, Nils Blüthgen, 2011, Strong negative feedback from Erk to Raf confers robustness to MAPK signalling. Mol. Syst. Biol., 7,  489  [[http://dx.doi.org/10.1038/msb.2011.27|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21613978%5Buid%5D|(abstract)]]  
 + 
 +Benjamin Bossan, Arnulf Koehncke, Peter Hammerstein, 2011, A new model and method for understanding Wolbachia-induced cytoplasmic incompatibility. PLoS ONE, 6,  e19757  [[http://dx.doi.org/10.1371/journal.pone.0019757|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21572955%5Buid%5D|(abstract)]]  
 + 
 +Christian Klotz, Thomas Ziegler, Ana Sofia Figueiredo, Sebastian Rausch, Matthew R Hepworth, Nadja Obsivac, Christine Sers, Roland Lang, Peter Hammerstein, Richard Lucius, Susanne Hartmann, 2011, A helminth immunomodulator exploits host signaling events to regulate cytokine production in macrophages. PLoS Pathog., 7,  e1001248  [[http://dx.doi.org/10.1371/journal.ppat.1001248|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21253577%5Buid%5D|(abstract)]]  
 + 
 +Marc Päpper, Richard Kempter, Christian Leibold, 2011, Synaptic tagging, evaluation of memories, and the distal reward problem. Learn. Mem., 18,  58-70  [[http://dx.doi.org/10.1101/lm.2024811|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21191043%5Buid%5D|(abstract)]]  
 + 
 +Ettore Murabito, Kieran Smallbone, Jonathan Swinton, Hans V Westerhoff, Ralf Steuer, 2011, A probabilistic approach to identify putative drug targets in biochemical networks. J R Soc Interface, 8,  880-95  [[http://dx.doi.org/10.1098/rsif.2010.0540|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21123256%5Buid%5D|(abstract)]]  
 + 
 + 
 +=== 2010 === 
 +Adrián E Granada, Trinitat Cambras, Antoni Díez-Noguera, Hanspeter Herzel, 2011, Circadian desynchronization. Interface Focus, 1,  153-66  [[http://dx.doi.org/10.1098/rsfs.2010.0002|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=22419981%5Buid%5D|(abstract)]]  
 + 
 +Marc Päpper, Richard Kempter, Christian Leibold, 2011, Synaptic tagging, evaluation of memories, and the distal reward problem. Learn. Mem., 18,  58-70  [[http://dx.doi.org/10.1101/lm.2024811|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21191043%5Buid%5D|(abstract)]]  
 + 
 +Karsten Jürchott, Ralf-Jürgen Kuban, Till Krech, Nils Blüthgen, Ulrike Stein, Wolfgang Walther, Christian Friese, Szymon M Kiełbasa, Ute Ungethüm, Per Lund, Thomas Knösel, Wolfgang Kemmner, Markus Morkel, Johannes Fritzmann, Peter M Schlag, Walter Birchmeier, Tammo Krueger, Silke Sperling, Christine Sers, Hans-Dieter Royer, Hanspeter Herzel, Reinhold Schäfer, 2010, Identification of Y-box binding protein 1 as a core regulator of MEK/ERK pathway-dependent gene signatures in colorectal cancer cells. PLoS Genet., 6,  e1001231  [[http://dx.doi.org/10.1371/journal.pgen.1001231|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21170361%5Buid%5D|(abstract)]]  
 + 
 +Christian Thiemann, Fabian Theis, Daniel Grady, Rafael Brune, Dirk Brockmann, 2010, The structure of borders in a small world. PLoS ONE, 5,  e15422  [[http://dx.doi.org/10.1371/journal.pone.0015422|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21124970%5Buid%5D|(abstract)]]  
 + 
 +Ettore Murabito, Kieran Smallbone, Jonathan Swinton, Hans V Westerhoff, Ralf Steuer, 2011, A probabilistic approach to identify putative drug targets in biochemical networks. J R Soc Interface, 8,  880-95  [[http://dx.doi.org/10.1098/rsif.2010.0540|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21123256%5Buid%5D|(abstract)]]  
 + 
 +Ute Abraham, Adrián E Granada, Pål O Westermark, Markus Heine, Achim Kramer, Hanspeter Herzel, 2010, Coupling governs entrainment range of circadian clocks. Mol. Syst. Biol., 6,  438  [[http://dx.doi.org/10.1038/msb.2010.92|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=21119632%5Buid%5D|(abstract)]]  
 + 
 +Paula T Kuokkanen, Hermann Wagner, Go Ashida, Catherine E Carr, Richard Kempter, 2010, On the origin of the extracellular field potential in the nucleus laminaris of the barn owl (Tyto alba). J. Neurophysiol., 104,  2274-90  [[http://dx.doi.org/10.1152/jn.00395.2010|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20685926%5Buid%5D|(abstract)]]  
 + 
 +Olof Leimar, Peter Hammerstein, 2010, Cooperation for direct fitness benefits. Philos. Trans. R. Soc. Lond., B, Biol. Sci., 365,  2619-26  [[http://dx.doi.org/10.1098/rstb.2010.0116|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20679106%5Buid%5D|(abstract)]]  
 + 
 +Christian Brettschneider, Rebecca J Rose, Stefanie Hertel, Ilka M Axmann, Albert J R Heck, Markus Kollmann, 2010, A sequestration feedback determines dynamics and temperature entrainment of the KaiABC circadian clock. Mol. Syst. Biol., 6,  389  [[http://dx.doi.org/10.1038/msb.2010.44|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20631683%5Buid%5D|(abstract)]]  
 + 
 +Roland Schaette, Ovidiu König, Dirk Hornig, Manfred Gross, Richard Kempter, 2010, Acoustic stimulation treatments against tinnitus could be most effective when tinnitus pitch is within the stimulated frequency range. Hear. Res., 269,  95-101  [[http://dx.doi.org/10.1016/j.heares.2010.06.022|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20619332%5Buid%5D|(abstract)]]  
 + 
 +Henning Knoop, Yvonne Zilliges, Wolfgang Lockau, Ralf Steuer, 2010, The metabolic network of Synechocystis sp. PCC 6803: systemic properties of autotrophic growth. Plant Physiol., 154,  410-22  [[http://dx.doi.org/10.1104/pp.110.157198|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20616194%5Buid%5D|(abstract)]]  
 + 
 +Szymon M Kiełbasa, Holger Klein, Helge G Roider, Martin Vingron, Nils Blüthgen, 2010, TransFind--predicting transcriptional regulators for gene sets. Nucleic Acids Res., 38,  W275-80  [[http://dx.doi.org/10.1093/nar/gkq438|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20511592%5Buid%5D|(abstract)]]  
 + 
 +Jignesh R Parikh, Bertram Klinger, Yu Xia, Jarrod A Marto, Nils Blüthgen, 2010, Discovering causal signaling pathways through gene-expression patterns. Nucleic Acids Res., 38,  W109-17  [[http://dx.doi.org/10.1093/nar/gkq424|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20494976%5Buid%5D|(abstract)]]  
 + 
 +Szymon M Kiełbasa, Nils Blüthgen, Michael Fähling, Ralf Mrowka, 2010, Targetfinder.org: a resource for systematic discovery of transcription factor target genes. Nucleic Acids Res., 38,  W233-8  [[http://dx.doi.org/10.1093/nar/gkq374|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20460454%5Buid%5D|(abstract)]]  
 + 
 +Nils Blüthgen, 2010, Transcriptional feedbacks in mammalian signal transduction pathways facilitate rapid and reliable protein induction. Mol Biosyst, 6,  1277-84  [[http://dx.doi.org/10.1039/c002598d|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20449523%5Buid%5D|(abstract)]]  
 + 
 +Samuel Bernard, Branka Cajavec Bernard, Francis Lévi, Hanspeter Herzel, 2010, Tumor growth rate determines the timing of optimal chronomodulated treatment schedules. PLoS Comput. Biol., 6,  e1000712  [[http://dx.doi.org/10.1371/journal.pcbi.1000712|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20333244%5Buid%5D|(abstract)]]  
 + 
 +Isao T Tokuda, Marco Zemke, Malte Kob, Hanspeter Herzel, 2010, Biomechanical modeling of register transitions and the role of vocal tract resonators. J. Acoust. Soc. Am., 127,  1528-36  [[http://dx.doi.org/10.1121/1.3299201|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20329853%5Buid%5D|(abstract)]]  
 + 
 +Yue-Hien Lee, Manuela Benary, Ria Baumgrass, Hanspeter Herzel, 2010, Prediction of regulatory transcription factors in T helper cell differentiation and maintenance. Genome Inform, 22,  84-94  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20238421%5Buid%5D|(abstract)]]  
 + 
 +Olaf Wolkenhauer, Charles Auffray, Simone Baltrusch, Nils Blüthgen, Helen Byrne, Marta Cascante, Andrea Ciliberto, Trevor Dale, Dirk Drasdo, David Fell, James E Ferrell, Daniel Gallahan, Robert Gatenby, Ulrich Günther, Brian D Harms, Hanspeter Herzel, Christian Junghanss, Manfred Kunz, Ingeborg van Leeuwen, Philippe Lenormand, Francis Levi, Michael Linnebacher, John Lowengrub, Philip K Maini, Arif Malik, Katja Rateitschak, Owen Sansom, Reinhold Schäfer, Karsten Schürrle, Christine Sers, Santiago Schnell, Darryl Shibata, John Tyson, Julio Vera, Michael White, Boris Zhivotovsky, Robert Jaster, 2010, Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Res., 70,  12-3  [[http://dx.doi.org/10.1158/0008-5472.CAN-09-2676|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20028868%5Buid%5D|(abstract)]]  
 + 
 +Erik Arner, Pål O Westermark, Kirsty L Spalding, Tom Britton, Mikael Rydén, Jonas Frisén, Samuel Bernard, Peter Arner, 2010, Adipocyte turnover: relevance to human adipose tissue morphology. Diabetes, 59,  105-9  [[http://dx.doi.org/10.2337/db09-0942|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19846802%5Buid%5D|(abstract)]]  
 + 
 + 
 +=== 2009 === 
 +Olaf Wolkenhauer, Charles Auffray, Simone Baltrusch, Nils Blüthgen, Helen Byrne, Marta Cascante, Andrea Ciliberto, Trevor Dale, Dirk Drasdo, David Fell, James E Ferrell, Daniel Gallahan, Robert Gatenby, Ulrich Günther, Brian D Harms, Hanspeter Herzel, Christian Junghanss, Manfred Kunz, Ingeborg van Leeuwen, Philippe Lenormand, Francis Levi, Michael Linnebacher, John Lowengrub, Philip K Maini, Arif Malik, Katja Rateitschak, Owen Sansom, Reinhold Schäfer, Karsten Schürrle, Christine Sers, Santiago Schnell, Darryl Shibata, John Tyson, Julio Vera, Michael White, Boris Zhivotovsky, Robert Jaster, 2010, Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Res., 70,  12-3  [[http://dx.doi.org/10.1158/0008-5472.CAN-09-2676|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=20028868%5Buid%5D|(abstract)]]  
 + 
 +Pål O Westermark, David K Welsh, Hitoshi Okamura, Hanspeter Herzel, 2009, Quantification of circadian rhythms in single cells. PLoS Comput. Biol., 5,  e1000580  [[http://dx.doi.org/10.1371/journal.pcbi.1000580|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19956762%5Buid%5D|(abstract)]]  
 + 
 +Erik Arner, Pål O Westermark, Kirsty L Spalding, Tom Britton, Mikael Rydén, Jonas Frisén, Samuel Bernard, Peter Arner, 2010, Adipocyte turnover: relevance to human adipose tissue morphology. Diabetes, 59,  105-9  [[http://dx.doi.org/10.2337/db09-0942|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19846802%5Buid%5D|(abstract)]]  
 + 
 +Robert Schmidt, Kamran Diba, Christian Leibold, Dietmar Schmitz, György Buzsáki, Richard Kempter, 2009, Single-trial phase precession in the hippocampus. J. Neurosci., 29,  13232-41  [[http://dx.doi.org/10.1523/JNEUROSCI.2270-09.2009|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19846711%5Buid%5D|(abstract)]]  
 + 
 +Adrián E Granada, Hanspeter Herzel, 2009, How to achieve fast entrainment? The timescale to synchronization. PLoS ONE, 4,  e7057  [[http://dx.doi.org/10.1371/journal.pone.0007057|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19774087%5Buid%5D|(abstract)]]  
 + 
 +Frank J Bruggeman, Nils Blüthgen, Hans V Westerhoff, 2009, Noise management by molecular networks. PLoS Comput. Biol., 5,  e1000506  [[http://dx.doi.org/10.1371/journal.pcbi.1000506|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19763166%5Buid%5D|(abstract)]]  
 + 
 +Hermann Wagner, Sandra Brill, Richard Kempter, Catherine E Carr, 2009, Auditory responses in the barn owl's nucleus laminaris to clicks: impulse response and signal analysis of neurophonic potential. J. Neurophysiol., 102,  1227-40  [[http://dx.doi.org/10.1152/jn.00092.2009|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19535487%5Buid%5D|(abstract)]]  
 + 
 +Judith Dannowski, Matthias Flor, Arndt Telschow, Peter Hammerstein, 2009, The effect of sibmating on the infection dynamics of male-killing bacteria. Evolution, 63,  2525-34  [[http://dx.doi.org/10.1111/j.1558-5646.2009.00749.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19519634%5Buid%5D|(abstract)]]  
 + 
 +Ilka M Axmann, Ulf Dühring, Luiza Seeliger, Anne Arnold, Jens T Vanselow, Achim Kramer, Annegret Wilde, 2009, Biochemical evidence for a timing mechanism in prochlorococcus. J. Bacteriol., 191,  5342-7  [[http://dx.doi.org/10.1128/JB.00419-09|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19502405%5Buid%5D|(abstract)]]  
 + 
 +Ana Sofia Figueiredo, Thomas Höfer, Christian Klotz, Christine Sers, Susanne Hartmann, Richard Lucius, Peter Hammerstein, 2009, Modelling and simulating interleukin-10 production and regulation by macrophages after stimulation with an immunomodulator of parasitic nematodes. FEBS J., 276,  3454-69  [[http://dx.doi.org/10.1111/j.1742-4658.2009.07068.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19456864%5Buid%5D|(abstract)]]  
 + 
 +Roland Schaette, Richard Kempter, 2009, Predicting tinnitus pitch from patients' audiograms with a computational model for the development of neuronal hyperactivity. J. Neurophysiol., 101,  3042-52  [[http://dx.doi.org/10.1152/jn.91256.2008|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19357344%5Buid%5D|(abstract)]]  
 + 
 +Katarzyna Bozek, Angela Relógio, Szymon M Kielbasa, Markus Heine, Christof Dame, Achim Kramer, Hanspeter Herzel, 2009, Regulation of clock-controlled genes in mammals. PLoS ONE, 4,  e4882  [[http://dx.doi.org/10.1371/journal.pone.0004882|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19287494%5Buid%5D|(abstract)]]  
 + 
 +Arnulf Koehncke, Arndt Telschow, John H Werren, Peter Hammerstein, 2009, Life and death of an influential passenger: Wolbachia and the evolution of CI-modifiers by their hosts. PLoS ONE, 4,  e4425  [[http://dx.doi.org/10.1371/journal.pone.0004425|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19209229%5Buid%5D|(abstract)]]  
 + 
 +Susanne Schreiber, Inés Samengo, Andreas V M Herz, 2009, Two distinct mechanisms shape the reliability of neural responses. J. Neurophysiol., 101,  2239-51  [[http://dx.doi.org/10.1152/jn.90711.2008|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19193775%5Buid%5D|(abstract)]]  
 + 
 +Nils Blüthgen, Stefan Legewie, Szymon M Kielbasa, Anja Schramme, Oleg Tchernitsa, Jana Keil, Andrea Solf, Martin Vingron, Reinhold Schäfer, Hanspeter Herzel, Christine Sers, 2009, A systems biological approach suggests that transcriptional feedback regulation by dual-specificity phosphatase 6 shapes extracellular signal-related kinase activity in RAS-transformed fibroblasts. FEBS J., 276,  1024-35  [[http://dx.doi.org/10.1111/j.1742-4658.2008.06846.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19154344%5Buid%5D|(abstract)]]  
 + 
 +Sonja-Verena Albers, Nils-Kåre Birkeland, Arnold J M Driessen, Susanne Gertig, Patrick Haferkamp, Hans-Peter Klenk, Theresa Kouril, Andrea Manica, Trong K Pham, Peter Ruoff, Christa Schleper, Dietmar Schomburg, Kieran J Sharkey, Bettina Siebers, Pawel Sierocinski, Ralf Steuer, John van der Oost, Hans V Westerhoff, Patricia Wieloch, Phillip C Wright, Melanie Zaparty, 2009, SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation. Biochem. Soc. Trans., 37,  58-64  [[http://dx.doi.org/10.1042/BST0370058|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19143602%5Buid%5D|(abstract)]]  
 + 
 +Stefan Legewie, Christine Sers, Hanspeter Herzel, 2009, Kinetic mechanisms for overexpression insensitivity and oncogene cooperation. FEBS Lett., 583,  93-6  [[http://dx.doi.org/10.1016/j.febslet.2008.11.027|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19059249%5Buid%5D|(abstract)]]  
 + 
 + 
 +=== 2008 === 
 +Stefan Legewie, Christine Sers, Hanspeter Herzel, 2009, Kinetic mechanisms for overexpression insensitivity and oncogene cooperation. FEBS Lett., 583,  93-6  [[http://dx.doi.org/10.1016/j.febslet.2008.11.027|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19059249%5Buid%5D|(abstract)]]  
 + 
 +Markus J Herrgård, Neil Swainston, Paul Dobson, Warwick B Dunn, K Yalçin Arga, Mikko Arvas, Nils Blüthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novère, Peter Li, Wolfram Liebermeister, Monica L Mo, Ana Paula Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasić, Dieter Weichart, Roger Brent, David S Broomhead, Hans V Westerhoff, Betül Kirdar, Merja Penttilä, Edda Klipp, Bernhard Ø Palsson, Uwe Sauer, Stephen G Oliver, Pedro Mendes, Jens Nielsen, Douglas B Kell, 2008, A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nat. Biotechnol., 26,  1155-60  [[http://dx.doi.org/10.1038/nbt1492|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18846089%5Buid%5D|(abstract)]]  
 + 
 +Nils Blüthgen, Stefan Legewie, 2008, Systems analysis of MAPK signal transduction. Essays Biochem., 45,  95-107  [[http://dx.doi.org/10.1042/BSE0450095|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18793126%5Buid%5D|(abstract)]]  
 + 
 +Annamaria Bevilacqua, Stephen J Wilkinson, Richard Dimelow, Ettore Murabito, Samrina Rehman, Maria Nardelli, Karen van Eunen, Sergio Rossell, Frank J Bruggeman, Nils Blüthgen, Dirk De Vos, Jildau Bouwman, Barbara M Bakker, Hans V Westerhoff, 2008, Vertical systems biology: from DNA to flux and back. SEB Exp Biol Ser, 61,  65-91  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18709737%5Buid%5D|(abstract)]]  
 + 
 +Hanspeter Herzel, Nils Blüthgen, 2008, Mathematical models in mammalian cell biology. Genome Biol., 9,  316  [[http://dx.doi.org/10.1186/gb-2008-9-7-316|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18638360%5Buid%5D|(abstract)]]  
 + 
 +Stefan Legewie, Dennis Dienst, Annegret Wilde, Hanspeter Herzel, Ilka M Axmann, 2008, Small RNAs establish delays and temporal thresholds in gene expression. Biophys. J., 95,  3232-8  [[http://dx.doi.org/10.1529/biophysj.108.133819|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18599624%5Buid%5D|(abstract)]]  
 + 
 +Yutaka Kobayashi, Peter Hammerstein, Arndt Telschow, 2008, The neutral effective migration rate in a mainland-island context. Theor Popul Biol, 74,  84-92  [[http://dx.doi.org/10.1016/j.tpb.2008.05.001|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18550138%5Buid%5D|(abstract)]]  
 + 
 +Ralf Mrowka, Nils Blüthgen, Michael Fähling, 2008, Seed-based systematic discovery of specific transcription factor target genes. FEBS J., 275,  3178-92  [[http://dx.doi.org/10.1111/j.1742-4658.2008.06471.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18485006%5Buid%5D|(abstract)]]  
 + 
 +Stefan Legewie, Hanspeter Herzel, Hans V Westerhoff, Nils Blüthgen, 2008, Recurrent design patterns in the feedback regulation of the mammalian signalling network. Mol. Syst. Biol., 4,  190  [[http://dx.doi.org/10.1038/msb.2008.29|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18463614%5Buid%5D|(abstract)]]  
 + 
 +Kirsty L Spalding, Erik Arner, Pål O Westermark, Samuel Bernard, Bruce A Buchholz, Olaf Bergmann, Lennart Blomqvist, Johan Hoffstedt, Erik Näslund, Tom Britton, Hernan Concha, Moustapha Hassan, Mikael Rydén, Jonas Frisén, Peter Arner, 2008, Dynamics of fat cell turnover in humans. Nature, 453,  783-7  [[http://dx.doi.org/10.1038/nature06902|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18454136%5Buid%5D|(abstract)]]  
 + 
 +Roland Schaette, Richard Kempter, 2008, Development of hyperactivity after hearing loss in a computational model of the dorsal cochlear nucleus depends on neuron response type. Hear. Res., 240,  57-72  [[http://dx.doi.org/10.1016/j.heares.2008.02.006|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18396381%5Buid%5D|(abstract)]]  
 + 
 +Isao T Tokuda, Jaromir Horácek, Jan G Svec, Hanspeter Herzel, 2008, Bifurcations and chaos in register transitions of excised larynx experiments. Chaos, 18,  013102  [[http://dx.doi.org/10.1063/1.2825295|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18377053%5Buid%5D|(abstract)]]  
 + 
 +Roger J Sullivan, Edward H Hagen, Peter Hammerstein, 2008, Revealing the paradox of drug reward in human evolution. Proc. Biol. Sci., 275,  1231-41  [[http://dx.doi.org/10.1098/rspb.2007.1673|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18353749%5Buid%5D|(abstract)]]  
 + 
 +Anuradha Chauhan, Stefan Legewie, Pål O Westermark, Stephan Lorenzen, Hanspeter Herzel, 2008, A mesoscale model of G1/S phase transition in liver regeneration. J. Theor. Biol., 252,  465-73  [[http://dx.doi.org/10.1016/j.jtbi.2008.01.020|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18339403%5Buid%5D|(abstract)]]  
 + 
 +Christian Leibold, Anja Gundlfinger, Robert Schmidt, Kay Thurley, Dietmar Schmitz, Richard Kempter, 2008, Temporal compression mediated by short-term synaptic plasticity. Proc. Natl. Acad. Sci. U.S.A., 105,  4417-22  [[http://dx.doi.org/10.1073/pnas.0708711105|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18337494%5Buid%5D|(abstract)]]  
 + 
 +James C W Locke, Pål O Westermark, Achim Kramer, Hanspeter Herzel, 2008, Global parameter search reveals design principles of the mammalian circadian clock. BMC Syst Biol, 2,  22  [[http://dx.doi.org/10.1186/1752-0509-2-22|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18312618%5Buid%5D|(abstract)]]  
 + 
 +Kirsten Hilgenboecker, Peter Hammerstein, Peter Schlattmann, Arndt Telschow, John H Werren, 2008, How many species are infected with Wolbachia?--A statistical analysis of current data. FEMS Microbiol. Lett., 281,  215-20  [[http://dx.doi.org/10.1111/j.1574-6968.2008.01110.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18312577%5Buid%5D|(abstract)]]  
 + 
 +Matthias E Futschik, Hanspeter Herzel, 2008, Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis. Bioinformatics, 24,  1063-9  [[http://dx.doi.org/10.1093/bioinformatics/btn072|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18310054%5Buid%5D|(abstract)]]  
 + 
 +Steven A Brown, Dieter Kunz, Amelie Dumas, Pål O Westermark, Katja Vanselow, Amely Tilmann-Wahnschaffe, Hanspeter Herzel, Achim Kramer, 2008, Molecular insights into human daily behavior. Proc. Natl. Acad. Sci. U.S.A., 105,  1602-7  [[http://dx.doi.org/10.1073/pnas.0707772105|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18227513%5Buid%5D|(abstract)]]  
 + 
 +Manuela Benary, Hanna Bendfeldt, Ria Baumgrass, Hanspeter Herzel, 2008, Modeling IL-2 gene expression in human regulatory T cells. Genome Inform, 20,  222-30  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=19425136%5Buid%5D|(abstract)]]  
 + 
 +Kay Thurley, Christian Leibold, Anja Gundlfinger, Dietmar Schmitz, Richard Kempter, 2008, Phase precession through synaptic facilitation. Neural Comput, 20,  1285-324  [[http://dx.doi.org/10.1162/neco.2008.07-06-292|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18085985%5Buid%5D|(abstract)]]  
 + 
 +Coen P H Elemans, Riccardo Zaccarelli, Hanspeter Herzel, 2008, Biomechanics and control of vocalization in a non-songbird. J R Soc Interface, 5,  691-703  [[http://dx.doi.org/10.1098/rsif.2007.1237|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17999946%5Buid%5D|(abstract)]]  
 + 
 +Christian Leibold, Richard Kempter, 2008, Sparseness constrains the prolongation of memory lifetime via synaptic metaplasticity. Cereb. Cortex, 18,  67-77  [[http://dx.doi.org/10.1093/cercor/bhm037|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17490993%5Buid%5D|(abstract)]]  
 + 
 + 
 +=== 2007 === 
 +Matthias E Futschik, Anna Tschaut, Gautam Chaurasia, Hanspeter Herzel, 2007, Graph-theoretical comparison reveals structural divergence of human protein interaction networks. Genome Inform, 18,  141-51  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18546482%5Buid%5D|(abstract)]]  
 + 
 +Katarzyna Bozek, Szymon M Kiełbasa, Achim Kramer, Hanspeter Herzel, 2007, Promoter analysis of Mammalian clock controlled genes. Genome Inform, 18,  65-74  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18546475%5Buid%5D|(abstract)]]  
 + 
 +Ilka M Axmann, Stefan Legewie, Hanspeter Herzel, 2007, A minimal circadian clock model. Genome Inform, 18,  54-64  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18546474%5Buid%5D|(abstract)]]  
 + 
 +Szymon M Kiełbasa, Hanspeter Herzel, Ilka M Axmann, 2007, Regulatory elements of marine cyanobacteria. Genome Inform, 18,  1-11  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18546470%5Buid%5D|(abstract)]]  
 + 
 +Sergio Grimbs, Joachim Selbig, Sascha Bulik, Hermann-Georg Holzhütter, Ralf Steuer, 2007, The stability and robustness of metabolic states: identifying stabilizing sites in metabolic networks. Mol. Syst. Biol., 3,  146  [[http://dx.doi.org/10.1038/msb4100186|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=18004279%5Buid%5D|(abstract)]]  
 + 
 +Anja Gundlfinger, Christian Leibold, Katja Gebert, Marion Moisel, Dietmar Schmitz, Richard Kempter, 2007, Differential modulation of short-term synaptic dynamics by long-term potentiation at mouse hippocampal mossy fibre synapses. J. Physiol. (Lond.), 585,  853-65  [[http://dx.doi.org/10.1113/jphysiol.2007.143925|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17962326%5Buid%5D|(abstract)]]  
 + 
 +Björn Voss, Gregor Gierga, Ilka M Axmann, Wolfgang R Hess, 2007, A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria. BMC Genomics, 8,  375  [[http://dx.doi.org/10.1186/1471-2164-8-375|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17941988%5Buid%5D|(abstract)]]  
 + 
 +Silke Reischl, Katja Vanselow, Pål O Westermark, Nadine Thierfelder, Bert Maier, Hanspeter Herzel, Achim Kramer, 2007, Beta-TrCP1-mediated degradation of PERIOD2 is essential for circadian dynamics. J. Biol. Rhythms, 22,  375-86  [[http://dx.doi.org/10.1177/0748730407303926|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17876059%5Buid%5D|(abstract)]]  
 + 
 +Debbie Lindell, Jacob D Jaffe, Maureen L Coleman, Matthias E Futschik, Ilka M Axmann, Trent Rector, Gregory Kettler, Matthew B Sullivan, Robert Steen, Wolfgang R Hess, George M Church, Sallie W Chisholm, 2007, Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature, 449,  83-6  [[http://dx.doi.org/10.1038/nature06130|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17805294%5Buid%5D|(abstract)]]  
 + 
 +Arndt Telschow, Matthias Flor, Yutaka Kobayashi, Peter Hammerstein, John H Werren, 2007, Wolbachia-induced unidirectional cytoplasmic incompatibility and speciation: mainland-island model. PLoS ONE, 2,  e701  [[http://dx.doi.org/10.1371/journal.pone.0000701|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17684548%5Buid%5D|(abstract)]]  
 + 
 +Ralf Mrowka, Andreas Steege, Charlotte Kaps, Hanspeter Herzel, Bernd J Thiele, Pontus B Persson, Nils Blüthgen, 2007, Dissecting the action of an evolutionary conserved non-coding region on renin promoter activity. Nucleic Acids Res., 35,  5120-9  [[http://dx.doi.org/10.1093/nar/gkm535|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17660193%5Buid%5D|(abstract)]]  
 + 
 +Ilka M Axmann, Julia Holtzendorff, Björn Voss, Philip Kensche, Wolfgang R Hess, 2007, Two distinct types of 6S RNA in Prochlorococcus. Gene, 406,  69-78  [[http://dx.doi.org/10.1016/j.gene.2007.06.011|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17640832%5Buid%5D|(abstract)]]  
 + 
 +Isao T Tokuda, Jaromir Horácek, Jan G Svec, Hanspeter Herzel, 2007, Comparison of biomechanical modeling of register transitions and voice instabilities with excised larynx experiments. J. Acoust. Soc. Am., 122,  519-31  [[http://dx.doi.org/10.1121/1.2741210|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17614509%5Buid%5D|(abstract)]]  
 + 
 +Ralf Steuer, , Computational approaches to the topology, stability and dynamics of metabolic networks. Phytochemistry, 68,  2139-51  [[http://dx.doi.org/10.1016/j.phytochem.2007.04.041|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17574639%5Buid%5D|(abstract)]]  
 + 
 +Stefan Legewie, Birgit Schoeberl, Nils Blüthgen, Hanspeter Herzel, 2007, Competing docking interactions can bring about bistability in the MAPK cascade. Biophys. J., 93,  2279-88  [[http://dx.doi.org/10.1529/biophysj.107.109132|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17526574%5Buid%5D|(abstract)]]  
 + 
 +Christian Leibold, Richard Kempter, 2008, Sparseness constrains the prolongation of memory lifetime via synaptic metaplasticity. Cereb. Cortex, 18,  67-77  [[http://dx.doi.org/10.1093/cercor/bhm037|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17490993%5Buid%5D|(abstract)]]  
 + 
 +Samuel Bernard, Didier Gonze, Branka Cajavec, Hanspeter Herzel, Achim Kramer, 2007, Synchronization-induced rhythmicity of circadian oscillators in the suprachiasmatic nucleus. PLoS Comput. Biol., 3,  e68  [[http://dx.doi.org/10.1371/journal.pcbi.0030068|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17432930%5Buid%5D|(abstract)]]  
 + 
 +Sébastien Clodong, Ulf Dühring, Luiza Kronk, Annegret Wilde, Ilka Axmann, Hanspeter Herzel, Markus Kollmann, 2007, Functioning and robustness of a bacterial circadian clock. Mol. Syst. Biol., 3,  90  [[http://dx.doi.org/10.1038/msb4100128|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17353932%5Buid%5D|(abstract)]]  
 + 
 +Ralf Steuer, Adriano Nunes Nesi, Alisdair R Fernie, Thilo Gross, Bernd Blasius, Joachim Selbig, 2007, From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinformatics, 23,  1378-85  [[http://dx.doi.org/10.1093/bioinformatics/btm065|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17344242%5Buid%5D|(abstract)]]  
 + 
 +Nico Blüthgen, Florian Menzel, Thomas Hovestadt, Brigitte Fiala, Nils Blüthgen, 2007, Specialization, constraints, and conflicting interests in mutualistic networks. Curr. Biol., 17,  341-6  [[http://dx.doi.org/10.1016/j.cub.2006.12.039|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17275300%5Buid%5D|(abstract)]]  
 + 
 +Matthias E Futschik, Gautam Chaurasia, Hanspeter Herzel, 2007, Comparison of human protein-protein interaction maps. Bioinformatics, 23,  605-11  [[http://dx.doi.org/10.1093/bioinformatics/btl683|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17237052%5Buid%5D|(abstract)]]  
 + 
 +Gautam Chaurasia, Yasir Iqbal, Christian Hänig, Hanspeter Herzel, Erich E Wanker, Matthias E Futschik, 2007, UniHI: an entry gate to the human protein interactome. Nucleic Acids Res., 35,  D590-4  [[http://dx.doi.org/10.1093/nar/gkl817|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17158159%5Buid%5D|(abstract)]]  
 + 
 +Ralf Steuer, Katja Morgenthal, Wolfram Weckwerth, Joachim Selbig, 2007, A gentle guide to the analysis of metabolomic data. Methods Mol. Biol., 358,  105-26  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17035683%5Buid%5D|(abstract)]]  [[http://dx.doi.org/10.1007/978-1-59745-244-1_7|(full text)]]  
 + 
 +Pål O Westermark, Jeanette Hellgren Kotaleski, Anneli Björklund, Valdemar Grill, Anders Lansner, 2007, A mathematical model of the mitochondrial NADH shuttles and anaplerosis in the pancreatic beta-cell. Am. J. Physiol. Endocrinol. Metab., 292,  E373-93  [[http://dx.doi.org/10.1152/ajpendo.00589.2005|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16849626%5Buid%5D|(abstract)]]  
 + 
 + 
 +=== 2006 === 
 +Samuel Bernard, Hanspeter Herzel, 2006, Why do cells cycle with a 24 hour period? Genome Inform, 17,  72-9  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17503357%5Buid%5D|(abstract)]]  
 + 
 +Gautam Chaurasia, Hanspeter Herzel, Erich E Wanker, Matthias E Futschik, 2006, Systematic functional assessment of human protein-protein interaction maps. Genome Inform, 17,  36-45  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17503354%5Buid%5D|(abstract)]]  
 + 
 +Gautam Chaurasia, Yasir Iqbal, Christian Hänig, Hanspeter Herzel, Erich E Wanker, Matthias E Futschik, 2007, UniHI: an entry gate to the human protein interactome. Nucleic Acids Res., 35,  D590-4  [[http://dx.doi.org/10.1093/nar/gkl817|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17158159%5Buid%5D|(abstract)]]  
 + 
 +Nils Blüthgen, 2006, Sequestration shapes the response of signal transduction cascades. IUBMB Life, 58,  659-63  [[http://dx.doi.org/10.1080/15216540600994340|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=17085386%5Buid%5D|(abstract)]]  
 + 
 +Katja Vanselow, Jens T Vanselow, Pål O Westermark, Silke Reischl, Bert Maier, Thomas Korte, Andreas Herrmann, Hanspeter Herzel, Andreas Schlosser, Achim Kramer, 2006, Differential effects of PER2 phosphorylation: molecular basis for the human familial advanced sleep phase syndrome (FASPS). Genes Dev., 20,  2660-72  [[http://dx.doi.org/10.1101/gad.397006|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16983144%5Buid%5D|(abstract)]]  
 + 
 +Stefan Legewie, Nils Blüthgen, Hanspeter Herzel, 2006, Mathematical modeling identifies inhibitors of apoptosis as mediators of positive feedback and bistability. PLoS Comput. Biol., 2,  e120  [[http://dx.doi.org/10.1371/journal.pcbi.0020120|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16978046%5Buid%5D|(abstract)]]  
 + 
 +Ovidiu König, Roland Schaette, Richard Kempter, Manfred Gross, 2006, Course of hearing loss and occurrence of tinnitus. Hear. Res., 221,  59-64  [[http://dx.doi.org/10.1016/j.heares.2006.07.007|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16962270%5Buid%5D|(abstract)]]  
 + 
 +Ralf Steuer, Peter Humburg, Joachim Selbig, 2006, Validation and functional annotation of expression-based clusters based on gene ontology. BMC Bioinformatics, 7,  380  [[http://dx.doi.org/10.1186/1471-2105-7-380|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16911788%5Buid%5D|(abstract)]]  
 + 
 +Nico Blüthgen, Florian Menzel, Nils Blüthgen, 2006, Measuring specialization in species interaction networks. BMC Ecol., 6,  9  [[http://dx.doi.org/10.1186/1472-6785-6-9|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16907983%5Buid%5D|(abstract)]]  
 + 
 +Ralf Steuer, Thilo Gross, Joachim Selbig, Bernd Blasius, 2006, Structural kinetic modeling of metabolic networks. Proc. Natl. Acad. Sci. U.S.A., 103,  11868-73  [[http://dx.doi.org/10.1073/pnas.0600013103|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16880395%5Buid%5D|(abstract)]]  
 + 
 +Pål O Westermark, Jeanette Hellgren Kotaleski, Anneli Björklund, Valdemar Grill, Anders Lansner, 2007, A mathematical model of the mitochondrial NADH shuttles and anaplerosis in the pancreatic beta-cell. Am. J. Physiol. Endocrinol. Metab., 292,  E373-93  [[http://dx.doi.org/10.1152/ajpendo.00589.2005|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16849626%5Buid%5D|(abstract)]]  
 + 
 +Roland Schaette, Richard Kempter, 2006, Development of tinnitus-related neuronal hyperactivity through homeostatic plasticity after hearing loss: a computational model. Eur. J. Neurosci., 23,  3124-38  [[http://dx.doi.org/10.1111/j.1460-9568.2006.04774.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16820003%5Buid%5D|(abstract)]]  
 + 
 +Lokesh Kumar, Matthias Futschik, Hanspeter Herzel, 2006, DNA motifs and sequence periodicities. In Silico Biol. (Gedrukt), 6,  71-8  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16789915%5Buid%5D|(abstract)]]  
 + 
 +Ralf Steuer, 2006, Review: on the analysis and interpretation of correlations in metabolomic data. Brief. Bioinformatics, 7,  151-8  [[http://dx.doi.org/10.1093/bib/bbl009|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16772265%5Buid%5D|(abstract)]]  
 + 
 +Olof Leimar, Peter Hammerstein, Tom J M Van Dooren, 2006, A new perspective on developmental plasticity and the principles of adaptive morph determination. Am. Nat., 167,  367-76  [[http://dx.doi.org/10.1086/499566|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16673345%5Buid%5D|(abstract)]]  
 + 
 +Ulf Dühring, Ilka M Axmann, Wolfgang R Hess, Annegret Wilde, 2006, An internal antisense RNA regulates expression of the photosynthesis gene isiA. Proc. Natl. Acad. Sci. U.S.A., 103,  7054-8  [[http://dx.doi.org/10.1073/pnas.0600927103|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16636284%5Buid%5D|(abstract)]]  
 + 
 +Samuel Bernard, Branka Cajavec, Laurent Pujo-Menjouet, Michael C Mackey, Hanspeter Herzel, 2006, Modelling transcriptional feedback loops: the role of Gro/TLE1 in Hes1 oscillations. Philos Trans A Math Phys Eng Sci, 364,  1155-70  [[http://dx.doi.org/10.1098/rsta.2006.1761|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16608701%5Buid%5D|(abstract)]]  
 + 
 +Christian Leibold, Richard Kempter, 2006, Memory capacity for sequences in a recurrent network with biological constraints. Neural Comput, 18,  904-41  [[http://dx.doi.org/10.1162/089976606775774714|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16494695%5Buid%5D|(abstract)]]  
 + 
 +Nils Blüthgen, Frank J Bruggeman, Stefan Legewie, Hanspeter Herzel, Hans V Westerhoff, Boris N Kholodenko, 2006, Effects of sequestration on signal transduction cascades. FEBS J., 273,  895-906  [[http://dx.doi.org/10.1111/j.1742-4658.2006.05105.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16478465%5Buid%5D|(abstract)]]  
 + 
 +Edward H Hagen, Peter Hammerstein, 2006, Game theory and human evolution: a critique of some recent interpretations of experimental games. Theor Popul Biol, 69,  339-48  [[http://dx.doi.org/10.1016/j.tpb.2005.09.005|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16458945%5Buid%5D|(abstract)]]  
 + 
 +Branka Cajavec, Hanspeter Herzel, Samuel Bernard, 2006, Death of neuronal clusters contributes to variance of age at onset in Huntington's disease. Neurogenetics, 7,  21-5  [[http://dx.doi.org/10.1007/s10048-005-0025-x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16416264%5Buid%5D|(abstract)]]  
 + 
 +Obul Reddy Bandapalli, Martina Geheeb, Dennis Kobelt, Katrin Kuehnle, Sefer Elezkurtaj, Jens Herrmann, Axel M Gressner, Ralf Weiskirchen, Dieter Beule, Nils Blüthgen, Hanspeter Herzel, Claudia Franke, Karsten Brand, 2006, Global analysis of host tissue gene expression in the invasive front of colorectal liver metastases. Int. J. Cancer, 118,  74-89  [[http://dx.doi.org/10.1002/ijc.21307|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16080196%5Buid%5D|(abstract)]]  
 + 
 + 
 +=== 2005 === 
 +Peter Hammerstein, Edward H Hagen, 2005, The second wave of evolutionary economics in biology. Trends Ecol. Evol. (Amst.), 20,  604-9  [[http://dx.doi.org/10.1016/j.tree.2005.07.012|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16701443%5Buid%5D|(abstract)]]  
 + 
 +Branka Cajavec, Samuel Bernard, Hanspeter Herzel, 2005, Aggregation in Huntington's disease: insights through modelling. Genome Inform, 16,  262-71  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16362929%5Buid%5D|(abstract)]]  
 + 
 +Nils Blüthgen, Karsten Brand, Branka Cajavec, Maciej Swat, Hanspeter Herzel, Dieter Beule, 2005, Biological profiling of gene groups utilizing Gene Ontology. Genome Inform, 16,  106-15  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16362912%5Buid%5D|(abstract)]]  
 + 
 +Arndt Telschow, Peter Hammerstein, John H Werren, 2005, The effect of Wolbachia versus genetic incompatibilities on reinforcement and speciation. Evolution, 59,  1607-19  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16329235%5Buid%5D|(abstract)]]  
 + 
 +Stefan Legewie, Nils Blüthgen, Reinhold Schäfer, Hanspeter Herzel, 2005, Ultrasensitization: switch-like regulation of cellular signaling by transcriptional induction. PLoS Comput. Biol., 1,  e54  [[http://dx.doi.org/10.1371/journal.pcbi.0010054|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16261195%5Buid%5D|(abstract)]]  
 + 
 +Szymon M Kielbasa, Didier Gonze, Hanspeter Herzel, 2005, Measuring similarities between transcription factor binding sites. BMC Bioinformatics, 6,  237  [[http://dx.doi.org/10.1186/1471-2105-6-237|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16191190%5Buid%5D|(abstract)]] 
  
-Zhuchkova Ekaterina, Remme Michiel W H, Schreiber Susanne, 2013, Somatic versus dendritic resonance: differential filtering of inputs through non-uniform distributions of active conductances. PLoS ONE, 8,  e78908 [[http://dx.doi.org/10.1371/journal.pone.0078908|(full text)]] +Ilka M Axmann, Philip Kensche, Jörg Vogel, Stefan Kohl, Hanspeter Herzel, Wolfgang R Hess, 2005, Identification of cyanobacterial non-coding RNAs by comparative genome analysis. Genome Biol., 6,  R73  [[http://dx.doi.org/10.1186/gb-2005-6-9-r73|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16168080%5Buid%5D|(abstract)]] 
-       +
  
-Hertel Stefanie, Zoschke Reimo, Neumann Laura, Qu Yujiao, Axmann Ilka M, Schmitz-Linneweber Christian, 2013, Multiple checkpoints for the expression of the chloroplast-encoded splicing factor MatK. Plant Physiol., 163,  1686-98 [[http://dx.doi.org/10.1104/pp.113.227579|(full text)]] +Axel Kowald, Marina Jendrach, Sandra Pohl, Jürgen Bereiter-Hahn, Peter Hammerstein, 2005, On the relevance of mitochondrial fusions for the accumulation of mitochondrial deletion mutants: a modelling study. Aging Cell, 4,  273-83  [[http://dx.doi.org/10.1111/j.1474-9726.2005.00169.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16164426%5Buid%5D|(abstract)]] 
-       +
  
-Hermey Guido, Mahlke Claudia, Gutzmann Jakob J, Schreiber Jörg, Blüthgen Nils, Kuhl Dietmar, 2013, Genome-wide profiling of the activity-dependent hippocampal transcriptome. PLoS ONE, 8,  e76903 [[http://dx.doi.org/10.1371/journal.pone.0076903|(full text)]] +David T Blake, Fabrizio Strata, Richard Kempter, Michael M Merzenich, 2005, Experience-dependent plasticity in S1 caused by noncoincident inputs. J. Neurophysiol., 94,  2239-50  [[http://dx.doi.org/10.1152/jn.00172.2005|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16105958%5Buid%5D|(abstract)]] 
-       +
  
-Knoop Henning, Gründel Marianne, Zilliges Yvonne, Lehmann Robert, Hoffmann Sabrina, Lockau Wolfgang, Steuer Ralf, 2013, Flux balance analysis of cyanobacterial metabolism: the metabolic network of Synechocystis sp. PCC 6803. PLoS Comput. Biol., 9,  e1003081 [[http://dx.doi.org/10.1371/journal.pcbi.1003081|(full text)]] +Stefan Legewie, Nils Blüthgen, Hanspeter Herzel, 2005, Quantitative analysis of ultrasensitive responses. FEBS J., 272,  4071-9  [[http://dx.doi.org/10.1111/j.1742-4658.2005.04818.x|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=16098190%5Buid%5D|(abstract)]] 
-       +
  
-Glatzer Timor, Killig Monica, Meisig Johannes, Ommert Isabelle, Luetke-Eversloh Merlin, Babic Marina, Paclik Daniela, Blüthgen Nils, Seidl Rainer, Seifarth Claudia, Gröne Jörn, Lenarz Minoo, Stölzel Katharina, Fugmann Dominik, Porgador Angel, Hauser Anja, Karlas Alexander, Romagnani Chiara, 2013, RORγt⁺ innate lymphoid cells acquire a proinflammatory program upon engagement of the activating receptor NKp44. Immunity, 38,  1223-35 [[http://dx.doi.org/10.1016/j.immuni.2013.05.013|(full text)]] +Marina Jendrach, Sandra Pohl, Monika Vöth, Axel Kowald, Peter Hammerstein, Jürgen Bereiter-Hahn, , Morpho-dynamic changes of mitochondria during ageing of human endothelial cells. Mech. Ageing Dev., 126,  813-21  [[http://dx.doi.org/10.1016/j.mad.2005.03.002|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15888336%5Buid%5D|(abstract)]] 
-       +
  
-Bentele Kajetan, Saffert Paul, Rauscher Robert, Ignatova Zoya, Blüthgen Nils, 2013, Efficient translation initiation dictates codon usage at gene start. Mol. Syst. Biol., 9,  675 [[http://dx.doi.org/10.1038/msb.2013.32|(full text)]] +Peter Hammerstein, 2005, Strategic analysis in evolutionary genetics and the theory of games. J. Genet., 84,  7-12  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15876578%5Buid%5D|(abstract)]] 
-       +
  
-Klinger Bertram, Sieber Anja, Fritsche-Guenther Raphaela, Witzel Franziska, Berry Leanne, Schumacher Dirk, Yan Yibing, Durek Pawel, Merchant Mark, Schäfer Reinhold, Sers Christine, Blüthgen Nils, 2013, Network quantification of EGFR signaling unveils potential for targeted combination therapy. Mol. Syst. Biol., 9,  673 [[http://dx.doi.org/10.1038/msb.2013.29|(full text)]] +Didier Gonze, Samuel Bernard, Christian Waltermann, Achim Kramer, Hanspeter Herzel, 2005, Spontaneous synchronization of coupled circadian oscillators. Biophys. J., 89,  120-9  [[http://dx.doi.org/10.1529/biophysj.104.058388|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15849258%5Buid%5D|(abstract)]] 
-       +
  
-Carr Catherine, Shah Sahil, Ashida Go, McColgan Thomas, Wagner Hermann, Kuokkanen Paula T, Kempter Richard, Köppl Christine, 2013, Maps of ITD in the nucleus laminaris of the barn owl. Adv. Exp. Med. Biol., 787,  215-22 [[http://dx.doi.org/10.1007/978-1-4614-1590-9_24|(full text)]] +Malte Kleinschmidt, Olav Grundmann, Nils Blüthgen, Hans-Ulrich Mösch, Gerhard H Braus, 2005, Transcriptional profiling of Saccharomyces cerevisiae cells under adhesion-inducing conditions. Mol. Genet. Genomics, 273,  382-93  [[http://dx.doi.org/10.1007/s00438-005-1139-4|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15843968%5Buid%5D|(abstract)]] 
-       +
  
-Herbst Christian T, Herzel Hanspeter, Svec Jan G, Wyman Megan T, Fitch W Tecumseh, 2013, Visualization of system dynamics using phasegrams. J R Soc Interface, 10,  20130288 [[http://dx.doi.org/10.1098/rsif.2013.0288|(full text)]] +Hermann Wagner, Sandra Brill, Richard Kempter, Catherine E Carr, 2005, Microsecond precision of phase delay in the auditory system of the barn owl. J. Neurophysiol., 94,  1655-8  [[http://dx.doi.org/10.1152/jn.01226.2004|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15843477%5Buid%5D|(abstract)]] 
-       +
  
-Lehmann Robert, Machné Rainer, Georg Jens, Benary Manuela, Axmann Ilka, Steuer Ralf, 2013, How cyanobacteria pose new problems to old methods: challenges in microarray time series analysis. BMC Bioinformatics, 14,  133 [[http://dx.doi.org/10.1186/1471-2105-14-133|(full text)]] +Isao Tokuda, Hanspeter Herzel, 2005, Detecting synchronizations in an asymmetric vocal fold model from time series data. Chaos, 15,  13702  [[http://dx.doi.org/10.1063/1.1848232|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15836270%5Buid%5D|(abstract)]] 
-       +
  
-Westermark Pål O, Herzel Hanspeter, 2013, Mechanism for 12 hr rhythm generation by the circadian clock. Cell Rep, 3,  1228-38 [[http://dx.doi.org/10.1016/j.celrep.2013.03.013|(full text)]] +Florian Geier, Sabine Becker-Weimann, Achim Kramer, Hanspeter Herzel, 2005, Entrainment in a model of the mammalian circadian oscillator. J. Biol. Rhythms, 20,  83-93  [[http://dx.doi.org/10.1177/0748730404269309|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15654073%5Buid%5D|(abstract)]] 
-       +
  
-Kuokkanen Paula T, Ashida Go, Carr Catherine E, Wagner Hermann, Kempter Richard, 2013, Linear summation in the barn owl's brainstem underlies responses to interaural time differences. J. Neurophysiol., 110,  117-30 [[http://dx.doi.org/10.1152/jn.00410.2012|(full text)]] +Nils Blüthgen, Szymon M Kiełbasa, Hanspeter Herzel, 2005, Inferring combinatorial regulation of transcription in silico. Nucleic Acids Res., 33,  272-9  [[http://dx.doi.org/10.1093/nar/gki167|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15647509%5Buid%5D|(abstract)]] 
-       +
  
-Granada Adrián E, Bordyugov Grigory, Kramer Achim, Herzel Hanspeter, 2013, Human chronotypes from a theoretical perspective. PLoS ONE, 8,  e59464 [[http://dx.doi.org/10.1371/journal.pone.0059464|(full text)]] +Matthias Truss, Maciej Swat, Szymon M Kielbasa, Reinhold Schäfer, Hanspeter Herzel, Christian Hagemeier, 2005, HuSiDa--the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells. Nucleic Acids Res., 33,  D108-11  [[http://dx.doi.org/10.1093/nar/gki131|(full text)]]  [[http://www.ncbi.nlm.nih.gov/pubmed/?term=15608157%5Buid%5D|(abstract)]] 
-       +
  
-Hertel Stefanie, Brettschneider Christian, Axmann Ilka M, 2013, Revealing a two-loop transcriptional feedback mechanism in the cyanobacterial circadian clock. PLoS Comput. Biol., 9,  e1002966 [[http://dx.doi.org/10.1371/journal.pcbi.1002966|(full text)]] 
-        
  
-Wiegard Anika, Dörrich Anja K, Deinzer Hans-Tobias, Beck Christian, Wilde Annegret, Holtzendorff Julia, Axmann Ilka M, 2013, Biochemical analysis of three putative KaiC clock proteins from Synechocystis sp. PCC 6803 suggests their functional divergence. Microbiology (Reading, Engl.), 159,  948-58 [[http://dx.doi.org/10.1099/mic.0.065425-0|(full text)]] +    
-       +
  
-Pangalos Maria, Donoso José R, Winterer Jochen, Zivkovic Aleksandar R, Kempter Richard, Maier Nikolaus, Schmitz Dietmar, 2013, Recruitment of oriens-lacunosum-moleculare interneurons during hippocampal ripples. Proc. Natl. Acad. Sci. U.S.A., 110,  4398-403 [[http://dx.doi.org/10.1073/pnas.1215496110|(full text)]] 
-        
  
-Bossan Benjamin, Hammerstein Peter, Koehncke Arnulf, 2013, We were all young once: an intragenomic perspective on parent-offspring conflict. Proc. Biol. Sci., 280,  20122637 [[http://dx.doi.org/10.1098/rspb.2012.2637|(full text)]] 
-        
  
-Blüthgen Nils, Legewie Stefan, 2013, Robustness of signal transduction pathways. Cell. Mol. Life Sci., 70,  2259-69 [[http://dx.doi.org/10.1007/s00018-012-1162-7|(full text)]]