members:upadhyay:start

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision		 Previous revision
members:upadhyay:start [2020/02/04 16:14] – upadhyaymembers:upadhyay:start [2021/04/21 09:20] (current) – upadhyay
Line 1: Line 1:
 ====Abhishek Upadhyay (Abhi) ==== ====Abhishek Upadhyay (Abhi) ====
-{{:members:upadhyay:abhiclock.jpg?200 |}}+{{:members:upadhyay:abhiclock.jpg?215 |}}
  
-**[[About]]**\\ 
-**Researcher ORCID**: [[https://orcid.org/0000-0003-0046-1168|https://orcid.org/0000-0003-0046-1168]] **Email**:   abhibiotechnologist@gmail.com ☎: +4930 2093 98410 \\ 
-Inter-multi-disciplinary researcher | Music,Humour,Sports,Snow,Nature | Science communicator | Photography enthusiast \\ 
-\\ 
 **[[Education & Research experiences]]**\\ **[[Education & Research experiences]]**\\
-**Ph.D** (Chronobiology, Systems biology, Mathematical modelling, Nonlinear dynamics, Model-organisms: Spyder Python 3.6 & Fungi) in supervision @Charite & Humboldt University of Berlin & co-supervision @Heidelberg University, GERMANY\\ +Postdoctoral fellow (Developmental Chronobiology) @ Friedrich Miescher Institute (FMI), Basel, SWITZERLAND\\
-**Predoctoral Fellow** (early evolution) @University of Witwatersrand (Wits), Johannesburg, SOUTH AFRICA\\ +
-**M.Phil** (Marine Biology, Ecology, Biomineralization, Biochemistry, Proteomics, Bioinformatics, Ocean acidification, Climate change, Model-organism: Oyster) @University of Hong Kong (HKU), HONG KONG\\ +
-**Research Fellow** (Evo-Devo, Genetics, Multicellularity, Model-organism: Social amoeba) @Indian Institute of Science (IISc), India\\ +
-**B.Engg** (Biotechnology Engineering), INDIA\\+
 \\ \\
 +**Ph.D (Chronobiology, Molecular Systems Biology)** 2016-20 \\ 
 +**cumulative thesis**: **"Molecular switches facilitate rhythms in the circadian clock of //Neurospora crassa//"** in supervision @ Charite & Humboldt University of Berlin (HU) & co-supervision @ Heidelberg University, GERMANY\\
 +\\
 +Predoctoral fellow (Evolutionary Biology) @ University of Witwatersrand (Wits), Johannesburg, SOUTH AFRICA\\
 +\\
 +**M.Phil (Marine Biology, Proteomics, Climate Change)** 2013-15 @ The University of Hong Kong (HKU), HONG KONG\\
 +\\
 +Premasters fellow @Indian Institute of Science (IISc), INDIA\\
 +\\
 +**B.Eng (Biotechnology Engineering)** 2008-12 , INDIA\\
 \\ \\
 //__**"Timing matters !"**__//  //__**"Timing matters !"**__// 
 +\\
 +\\
 +\\
 ===== THEORETICAL  CHRONOBIOLOGY  GROUP  MEETINGS  DIRECTORY ===== ===== THEORETICAL  CHRONOBIOLOGY  GROUP  MEETINGS  DIRECTORY =====
-[seminar of the __**Hanspeter Herzel Group**__ ([[https://itb.biologie.hu-berlin.de/wiki/groups/herzel/start]] and https://scholar.google.com/citations?hl=en&user=4uT7ljsAAAAJ). we meet every __**Tuesday at 14:45**__ in the Haus4 seminar room(s) of the ITB unless stated otherwise! PS: list before 05.12.2017 has been compiled by **Christoph** (https://itb.biologie.hu-berlin.de/~schmal/4_Seminar.html), since 05.12.2017 taken over by **Abhi** ([[https://abhiup01.wixsite.com/abhi|https://abhiup01.wixsite.com/abhi]])]\\ +[ Seminar of the __**Hanspeter Herzel Group**__ ([[https://scholar.google.com/citations?hl=en&user=4uT7ljsAAAAJ|Hanspeter_Scholar]] and [[https://itb.biologie.hu-berlin.de/wiki/groups/herzel/start|Hanspeter_Web]]). We met every __**Tuesday at 14:45**__ in the Haus4 seminar room(s) of the ITB unless stated otherwise. Seminar list was compiled by Abhi ([[https://medium.com/@abhiup01/how-a-switch-between-doing-science-and-playing-soccer-with-phd-supervisor-motivates-my-research-803a0bf5b1c6|Abhi_Medium]]) since 05.12.2017 until 30.07.2020]\\ 
-{{ :members:upadhyay:group_pic2.jpg?600 |}}{{:members:upadhyay:1.jpg?400|}}{{ :members:upadhyay:seasonal_rhythm_from_my_lab_window_berlin-1.jpg?400|}}\\+\\ 
 + 
 +{{:members:upadhyay:1.jpg?300 |}} {{:members:upadhyay:group_pic2.jpg?300|}}  
 +{{:members:upadhyay:herzel_group_virtual_pic_2020.jpg?300|}} {{ :members:upadhyay:seasonal_rhythm_from_my_lab_window_berlin-1.jpg?300|}} {{ :members:upadhyay:brunnergrouppic1.jpg?300|}} 
 +\\ 
 +\\ 
 +\\ 
 +\\ 
 +**28.07.2020 **\\ 
 +**Summer vacation**\\ 
 +\\ 
 +**14.07.2020 **\\ 
 +**Christoph**\\ 
 +Compensation Mechanisms in the Mammalian Circadian Clock  
 +\\ 
 +\\ 
 +**07.07.2020 **\\ 
 +**Stephanie**\\ 
 +East-West Asymmetry in Recovery from Jetlag  
 +\\ 
 +\\ 
 +**30.06.2020 **\\ 
 +**Rebekka**\\ 
 +Circadian Rhythms: Data Analysis and Mathematical Modelling  
 +\\ 
 +\\ 
 +**23.06.2020 **\\ 
 +**All**\\ 
 +SRBR2020 debriefing  
 +\\ 
 +\\ 
 +**16.06.2020 **\\ 
 +**Maria**\\ 
 +Human chronobiology in Sydney 
 +\\ 
 +\\ 
 +**09.06.2020 **\\ 
 +**Bharath**\\ 
 +Modeling the cockroach circadian clock 
 +\\ 
 +\\ 
 +**01.06.2020 - 03.06.2020 **\\ 
 +**SRBR 2020**\\ 
 +https://srbr.societyconference.com/v2/ 
 +\\ 
 +\\ 
 +**26.05.2020**\\ 
 +**Hanspeter**\\ 
 +Q&A session on basics of statistics-II 
 +\\ 
 +\\ 
 +**19.05.2020**\\ 
 +**Hanspeter**\\ 
 +Q&A session on basics of statistics-I 
 +\\ 
 +\\ 
 +**12.05.2020**\\ 
 +**Hanspeter**\\ 
 +The dynamic origin of genomic isochores 
 +\\ 
 +\\ 
 +**05.05.2020**\\ 
 +**Anna**\\ 
 +Peripheral circadian oscillators couple via exchange of paracrine signaling molecules, including TGF-β 
 +\\ 
 +\\ 
 +**28.04.2020**\\ 
 +**Nora**\\ 
 +Inferring signaling pathways activation from circadian time series using PROGENy 
 +\\ 
 +\\ 
 +**21.04.2020**\\ 
 +**Inge**\\ 
 +Nonlinear dynamics in models of the circadian clock 
 +\\ 
 +\\ 
 +**14.04.2020**\\ 
 +**Abhi**\\ 
 +Multiple random phosphorylations provide long delays and switches in //Neurospora// clock  
 +\\ 
 +\\ 
 +**07.04.2020**\\ 
 +**Marta**\\ 
 +Progress report on anna's manuscript: mechanisms of intercellular coupling among peripheral circadian oscillators 
 +\\ 
 +\\ 
 +**31.03.2020**\\ 
 +**Everyone**\\ 
 +Updates to Hanspeter\\ 
 +\\ 
 +\\ 
 +**Following COVID-19 guidelines we switched to "online virtual meetings (via ITB zulip jitsi and/or Zoom)" while working from home offices since 16.03.2020**\\ 
 +\\
 \\ \\
 **10.03.2020**\\ **10.03.2020**\\
 **Ecegül**\\ **Ecegül**\\
-tba+Amplitudes and phases of clock genes in mammalian tissues \\ 
 +**Hanspeter**\\ 
 +Chronobiology and network theory 
 +\\ 
 +\\ 
 +**25.02.2020**\\ 
 +**Hanspeter**\\ 
 +Brainstorming: Control of circadian phases
 \\ \\
 \\ \\
Line 31: Line 135:
 **04.02.2020**\\ **04.02.2020**\\
 **Abhi**\\ **Abhi**\\
-1) Introduction to kinetic proofreading (KPR)\\ +**1)** Introduction to kinetic proofreading (KPR)\\ 
-2) CK1a (kinase) role in Neurospora clock+**2)** CK1a role in //Neurospora// clock
 \\ \\
 \\ \\
Line 93: Line 197:
 Tissue-specific regulation of clock-controlled genes- Learning from MyoD1 in muscle\\ Tissue-specific regulation of clock-controlled genes- Learning from MyoD1 in muscle\\
 **Abhi**\\ **Abhi**\\
-impressions from LASC-2019 meeting+impressions from LASC-2019 Uruguay meeting
 \\ \\
 \\ \\
Line 173: Line 277:
 **16.04.2019**\\ **16.04.2019**\\
 **Marta**\\ **Marta**\\
-Discussion/presentation about the next (2nd and 3rd) projects.+Discussion/presentation about the next projects.
 \\ \\
 \\ \\
 **09.04.2019**\\ **09.04.2019**\\
 **Abhi**\\ **Abhi**\\
-Discussion/presentation about the next (2nd and 3rd) projects.+Discussion/presentation about the next projects.
 \\ \\
 \\ \\
Line 203: Line 307:
 **29.01.2019**\\ **29.01.2019**\\
 **Marta**\\ **Marta**\\
-Ojalvo model: spontaneous synchronization due to quorum sensing+Ojalvo model: spontaneous synchronization 
 \\ \\
 \\ \\
Line 399: Line 503:
 **09.01.2018**\\ **09.01.2018**\\
 **Abhi**\\ **Abhi**\\
-Paper: DNA Replication Is Required for Circadian Clock Function by Regulating Rhythmic Nucleosome Composition [[https://www.ncbi.nlm.nih.gov/pubmed/28648778]].+Paper: DNA Replication Is Required for Circadian Clock Function by Regulating Rhythmic Nucleosome Composition
 \\ \\
 \\ \\
Line 429: Line 533:
 **14.11.2017**\\ **14.11.2017**\\
 **Abhishek**\\ **Abhishek**\\
-State of the art of project mathematical modleling of Neurospora circadian clock\\+State of the art of project mathematical modelling of //Neurospora// circadian clock\\
 \\ \\
  
Line 489: Line 593:
 **30.05.2017**\\ **30.05.2017**\\
 **Abhishek**\\ **Abhishek**\\
-Paper: The frequency natural antisense transcript first promotes, then represses, frequency gene expression via facultative heterochromatin http://www.pnas.org/content/112/14/4357.long \\+Paper: The frequency natural antisense transcript first promotes, then represses, frequency gene expression via facultative heterochromatin \\
 \\ \\
  
Line 524: Line 628:
 **07.03.2017**\\ **07.03.2017**\\
 **Isao Tokuda, Japan**\\ **Isao Tokuda, Japan**\\
-Variable entrainment property of Arabidopsis circadian clock by collective phase sensitivity\\+Variable entrainment property of //Arabidopsis// circadian clock by collective phase sensitivity\\
 \\ \\
  
 **28.02.2017**\\ **28.02.2017**\\
 **Abhishek**\\ **Abhishek**\\
-Neurospora crassa: introduction of its biology, circadian clock & mathematical models\\+//Neurospora crassa//: introduction of its biology, circadian clock & mathematical models\\
 \\ \\