itbmeeting:start

Good news, everyone

Upcoming Speakers
Past Seminars
Organisation
Meeting Alumni
Predicted Date [*] Name Group Location
2019-11-12 Romanczuk, Pawel (PI) Collective Information Processing ITB-House4
2019-11-19 Raghavendra Gadagkar (PI) Centre for Ecological Sciences, Indian Institute of Science, Bangalore, 560012, India. ITB-House4
2019-11-26 Steuer, Ralf (PI) Metabolic Networks ITB-Inv110
2019-12-03 König, Matthias (PI) Systems Biology of Liver ITB-Inv110
2019-12-10 Pfeiffer, Paul Computational Neurophysiology ITB-House4
2019-12-17 Poel, Winnie Collective Information Processing ITB-House4
2020-01-07 Rose, Pia Computational Neurophysiology ITB-House4
2020-01-14 Contreras, Susana Computational Neurophysiology ITB-House4
2020-01-21 Thurley, Kevin (PI) Systems Biology of Inflammation ITB-Inv110
2020-01-28 Kuokkanen, Paula Theoretical Neuroscience ITB-Inv110
2020-02-04 Schieferstein, Natalie Theoretical Neuroscience ITB-House4
2020-02-11 D'Albis, Tiziano Theoretical Neuroscience ITB-Inv110
2020-02-18 Burt, Phillipp Systems Biology of Inflammation ITB-Inv110
2020-02-25 Faizi, Marjan Metabolic Networks ITB-House4
2020-03-03 Schuppner, Rike-Benjamin System Administration ITB-Inv110
2020-03-10 Klamser, Pascal Collective Information Processing ITB-House4
2020-03-17 Borek, Zuzanna Systems Biology of Inflammation ITB-Inv110
2020-03-24 Upadhyay, Abhishek Molecular and Cellular Evolution ITB-Inv110
2020-03-31 Basti, Alireza Systems Biology of Cancer ITB-House4
2020-04-07 Uhlitz, Florian Systems Biology of Molecular Networks ITB-House4
2020-04-14 Astaburuaga, Rosario ITB-Inv110
2020-04-21 Ananthasubramaniam, Bharath Molecular and Cellular Evolution ITB-House4
2020-04-28 Wilkins, Adams ITB-Inv110
2020-05-05 Carrillo-Bustamante, Paola Vector Biology, MPI ITB-House4
2020-05-12 Schreiber, Susanne (PI) Computational Neurophysiology ITB-House4
2020-05-19 Brockmann, Dirk (PI) Research on Complex Systems ITB-Inv110
2020-05-26 Lauterbach, Elvira & Winkelhöfer Karin ITB Administration ITB-House4
2020-06-02 Benary, Manuela Systems Biology of Molecular Networks ITB-House4
2020-06-09 Sell, Thomas Systems Biology of Molecular Networks ITB-House4
2020-06-16 Lauterbach, Elvira Administration ITB-Inv110
2020-06-23 Gross, Torsten Systems Biology of Molecular Networks ITB-Inv110
2020-06-30 Herzel, Hanspeter (PI) Molecular and Cellular Evolution ITB-House4
2020-07-07 Behbood, Mahraz Computational Neurophysiology ITB-House4
2020-07-14 Schleimer, Jan-Hendrik Computational Neurophysiology ITB-Inv110
2020-07-21 Klinger, Bertram Systems Biology of Molecular Networks ITB-Inv110
2020-07-28 Grzegorzewski, Jan Systems Biology Of Liver ITB-House4
2020-08-04 Del Olmo, Marta Molecular and Cellular Evolution ITB-House4
2020-08-11 Relógio, Angela (PI) Systems Biology of Cancer ITB-House4
2020-08-18 Bluethgen, Nils (PI) Systems Biology of Molecular Networks ITB-House4
2020-08-25 Meisig, Johannes Systems Biology of Molecular Networks ITB-House4
2020-09-01 Reifenstein, Eric Computational Neurophysiology ITB-House4
2020-09-08 Winkelhöfer, Karin ITB ITB-Inv110
2020-09-15 Hammerstein, Peter (PI) Evolution of Organismic Systems ITB-House4
2020-09-22 Schmal, Christoph Molecular and Cellular Evolution ITB-House4
[*] Dates are predicted by skipping German holidays on Tuesdays in the python holidays package. Holiday breaks like over Christmas and local Berlin holidays are not accounted for and can result in changes of the final date of your presentation.
Date Speaker Title Slides
2019-11-05 Schmal, Christoph
Molecular and Cellular Evolution
Circadian entrainment across seasons: lessons from a red bread mold
2019-10-15 Reifenstein, Eric
Computational Neurophysiology
The benefit of phase precession for sequence learning
2019-10-08 Meisig, Johannes
Systems Biology of Molecular Networks
Using Slam-seq to characterize RNA processing rates globally.
2019-10-01 Bluethgen, Nils (PI)
Systems Biology of Molecular Networks
Dissecting Colon Cancer, Cell By Cell
2019-09-24 Relógio, Angela (PI)
Systems Biology of Cancer
A role for the circadian clock in metastasis: insights from a zebrafish model.
2019-09-17 Li, Yin
Systems Biology of Cancer
The bidirectional interplay between the circadian clock and the TGFβ/SMAD4 pathway modulates metastasis and drug response in pancreatic cancer.
2019-09-10 Del Olmo, Marta
Molecular and Cellular Evolution
Modelling Circadian Redox Oscillations
2019-09-03 El-Athman, Rukeia
Systems Biology of Cancer
A Landscape of Circadian and Ultradian Splicing Events in Mammalian Tissues
2019-07-09 Grzegorzewski, Jan
Systems Biology Of Liver
A Pharmacokinetics Database for Individualized and Stratified Computational Modelling
2019-07-02 Klinger, Bertram
Systems Biology of Molecular Networks
Mass-spec methods for phospho-protein detection
2019-06-25 Behbood, Mahraz
Computational Neurophysiology
Activity-Induced Changes in Ion Concentrations Switch Cellular Dynamics in Favor of the Brain's Rhythmic Activities (A Fast Slow Bifurcation Analysis)
2019-06-18 Herzel, Hanspeter (PI)
Molecular and Cellular Evolution
Nonlinear dynamics of the voice
2019-06-04 Gross, Torsten
Systems Biology of Molecular Networks
Robust network inference using response logic
2019-05-28 Clara Jongen
Research on Complex Systems
Context specific role of airports in global disease dynamics
2019-05-21 König, Matthias (PI)
Systems Biology of Liver
Reproducible research
2019-05-14 Sell, Thomas
Systems Biology of Molecular Networks
Signalling cell by cell with mass cytometry
2019-05-07 Benary, Manuela
Systems Biology of Molecular Networks
Precision oncology using big data – How to predict relevant targets and therapies?
2019-04-30 Pett, Patrick
Molecular and Cellular Evolution
Defense tissue specific circadian clock
2019-04-23 Sojo, Víctor
1+1=3: Membranes, proteins, and the intertwining branches of the Tree of Life
2019-04-16 Lauterbach, Elvira & Winkelhöfer Karin
ITB Administration
Security information and instructions
2019-04-02 Schreiber, Susanne (PI)
Computational Neurophysiology
Synchronization with a new type of spike
2019-03-24 Carrillo-Bustamante, Paola
Vector Biology, MPI
How can we understand the transmission and evolution of malaria? Insights from an in-silico individual-based model
2019-03-12 Ananthasubramaniam, Bharath
Molecular and Cellular Evolution
Ultradian rhythms in the transcriptome of Neurospora crassa http://itb.biologie.hu-berlin.de/~bharath/
2019-03-05 Astaburuaga, Rosario
Mathematical modeling of lysosomal ion homeostasis
2019-02-26 Uhlitz, Florian
Systems Biology of Molecular Networks
Single Cell RNA-Seq of Colorectal Cancer Organoids
2019-02-19 Basti, Alireza
Systems Biology of Cancer
In vivo and in vitro investigation of the circadian clock in human colorectal cancer
2019-02-12 Upadhyay, Abhishek
Molecular and Cellular Evolution
A degradation switch enables rhythm in a Neurospora clock model
2019-02-05 Klamser, Pascal
Collective Information Processing
Uncommon Risk-Behavior Evolution Due to Size-Selective Harvesting in Zebrafish
2019-01-29 Schuppner, Rike-Benjamin
System Administration
Frequently asked questions https://itbgit.biologie.hu-berlin.de/schuppner/itb-infrastructure-2019/blob/master/ITB%20Meeting%202019.pdf
2019-01-22 Faizi, Marjan
Metabolic Networks
Modeling a self-adapting system of phototrophic growth
2019-01-15 D'Albis, Tiziano
Theoretical Neuroscience
The origin of grid-cell patterns
2019-01-08 Schieferstein, Natalie
Theoretical Neuroscience
Mechanisms of phase precession in the hippocampal formation
2018-12-11 Genov, Nikolai
Systems Biology of Cancer
Time-dependent Isoform Expression Changes
2018-12-04 Kuokkanen, Paula
Theoretical Neuroscience
From single cells to extracellular field potentials and EEG
2018-11-27 Burt, Phillipp
Systems Biology of Inflammation
Response-time modeling of T helper cell differentiation
2018-11-20 Thurley, Kevin (PI)
Systems Biology of Inflammation
Modeling cell-cell communication dynamics in inflammatory responses
2018-11-13 Contreras, Susana
Computational Neurophysiology
An activity-induced transition in single-cell spiking dynamics
2018-11-06 Rose, Pia
Computational Neurophysiology
Neurobiology without neurons
2018-10-30 Romanczuk, Pawel (PI)
Collective Information Processing
Less is more - Limited attention facilitates collective migration in complex environments
2018-10-23 Pfeiffer, Paul
Computational Neurophysiology
Short term memory - Bistable neurons and reverberatory networks
2018-10-16 König, Matthias (PI)
Systems Biology of Liver
Modelling liver function tests - LiMAx
2018-10-09 Steuer, Ralf (PI)
Metabolic Networks
Modelling Phototrophic Growth
2018-10-02 Carlos Aguilar (PI)
Mapping the fungal web: Ecosystem functions to inspire human-made networks
2018-09-18 Schmal, Christoph
Molecular and Cellular Evolution
Dissociation of Intracellular Feedback Loops in the Mammalian Circadian Clock
2018-09-11 Rydenfelt, Mattias
Systems Biology of Molecular Networks
None
2018-07-17 Hammerstein, Peter (PI)
Evolution of Organismic Systems
Celebrating the end of the semester with a look at Australian outback adventures
2018-07-10 Winkelhöfer, Karin
ITB
Berlin waste water management
2018-07-03 Reifenstein, Eric
Computational Neurophysiology
Neuronal mechanisms of sequence learning
2018-06-26 Genov, Nikolai
Systems Biology of Cancer
2018-06-19 Evangelista, Roberta
Theoretical Neuroscience
A 3-populations spiking model for the generation of hippocampal sharp wave-ripple oscillations
2018-06-12 Meisig, Johannes
Systems Biology of Molecular Networks
Reconstructing gene regulatory networks in stem cells
2018-06-05 Bluethgen, Nils (PI)
Systems Biology of Molecular Networks
Colon cancer - cell by cell
2018-05-28 Li, Yin
Systems Biology of Cancer
Characterization of circadian clock in mammalian cancer cells
2018-05-21 Del Olmo, Marta
Molecular and Cellular Evolution
Circadian redox system
2018-05-15 El-Athman, Rukeia
Systems Biology of Cancer
Analysis of the circadian splicosome
2018-05-08 Grzegorzewski, Janek
Virus Classification by Pattern Recognition applied on Peptide-Virus Interactions
2018-04-24 Klinger, Bertram
Systems Biology of Molecular Networks
Studying oncogenic effects of RAS
2018-04-17 Holzbecher, André
Theoretical Neuroscience
Interneuronal gap junctions increase the synchrony of hippocampal ripple oscillations
2018-03-27 Relógio, Angela (PI)
Systems Biology of Cancer
A brief history of time
2018-03-20 Herzel, Hanspeter (PI)
Molecular and Cellular Evolution
The Choroid Plexus is an Important Circadian Clock Component
2018-03-13 Schleimer, Jan-Hendrik
Computational Neurophysiology
It's: Monty Python's Flying Circuit https://github.com/matthiaskoenig/itbmeeting/raw/master/slides/2018-03-13_schleimer.pdf
2018-03-06 Gross, Torsten
Systems Biology of Molecular Networks
A signalling network model predicts differential drug response of PIK3 mutants in a colon cancer cell line. wiki/members/grosstor
2018-02-27 König, Matthias (PI)
Systems Biology of Liver
A Quick Introduction to Version Control with Git
2018-02-20 Clara Jongen
Research on Complex Systems
Defining the scope: A context specific approach to identifying key airports during a pandemic.
2018-02-13 Sell, Thomas
Systems Biology of Molecular Networks
What is mass cytometry?
2018-01-30 Witzel, Franziska
Systems Biology of Molecular Networks
Integral feedback control in Erk1/2 signalling 2018-01-30_witzel.pdf
2018-01-23 Wilkins, Adams
2018-01-16 Upadhyay, Abhishek
Molecular and Cellular Evolution
Mathematical modeling of circadian clock in Neurospora crassa
2018-01-09 Obermayer, Benedikt
Bioinformatics Core Unit
Global characterization of post-transcriptional gene regulation at the onset of neuronal differentiation
2017-12-12 Uhlitz, Florian
Systems Biology of Molecular Networks
Single cell RNAseq of colorectal cancer
2017-12-05 Basti, Alireza
Systems Biology of Cancer
Gene editing via CRISPR/CAS9
2017-11-28 Ünal, Evrim Besray
Systems Biology of Molecular Networks
Systems level expression correlation of Ras-like GTPase regulators and dysregulation in cancer.
2017-11-21 Ananthasubramaniam, Bharath
Molecular and Cellular Evolution
BodyTime: A new diagnostic tool to assess the internal clock
2017-11-14 Schuppner, Rike-Benjamin
System Administration
Technical Depth - Computers at the ITB http://docs.itb.pri/TechnicalDepth/assets/player/KeynoteDHTMLPlayer.html#1
2017-11-07 Klamser, Pascal
Collective Information Processing
Collective Performance in Presence of a Predator: An inhomogeneous, local field.
2017-10-24 Faizi, Marjan
Metabolic Networks
Cyanobacterial growth with intrinsic feedback
2017-10-17 Schieferstein, Natalie
Theoretical Neuroscience
Mechanisms of phase precession in the hippocampal formation.
2017-10-10 D'Albis, Tiziano
Theoretical Neuroscience
The origin of grid-cell patterns.
2017-09-26 Kuokkanen, Paula
Theoretical Neuroscience
Decomposing the neurophonic in the NL of the Barn Owl.
2017-09-19 Contreras, Susana
Computational Neurophysiology
The wonderlust gene
2017-09-05 Rose, Pia
Computational Neurophysiology
The influence of temperature on neuronal processing
2017-07-18 Paul Pfeiffer
Test-driven development
2017-07-11 König, Matthias (PI)
Systems Biology of Liver
Computational modeling of liver function tests: Why you need more coffee when you smoke
2017-07-04 Romanczuk, Pawel (PI)
Collective Information Processing
Collective Information Processing: How critical is it to be critical?
2017-06-27 Karin Winklhöfer und Elvira Lauterbach
ITB Symposium Organization Meeting
2017-06-20 Steuer, Ralf (PI)
Metabolic Networks
The protein economy of growth: How to multiply yourself in seven steps.
2017-06-13 Schreiber, Susanne (PI)
Computational Neurophysiology
Cold-induced silencing of neuronal activity
2017-06-06 Schmal, Christoph
Molecular and Cellular Evolution
Mammalian circadian clock - Network of coupled oscillators
2017-05-30 Rydenfelt, Mattias
Systems Biology of Molecular Networks
Drug sensitivity in cancer cell lines
2017-05-23 Remme, Michiel
Computational Neurophysiology and Neuroscience
The energetic cost of the brain
2017-05-16 Schleimer, Jan-Hendrik
Computational Neurophysiology
2017-05-09 Abreu, Mónica
Systems Biology of Cancer
Circadian analysis of the immune system
2017-05-02 Reifenstein, Eric
Computational Neurophysiology
Sequence learning in rats and humans
2017-04-25 Michalikova, Martina
Theoretical Neuroscience
Post-journal utopia & how to move there faster.
2017-04-04 Genov, Nikolai
Systems Biology of Cancer
Ultradian rhythms are evolutionary more conserved and play key roles in vital cellular functions.
2017-03-28 McColgan, Thomas
Theoretical Neuroscience
Report of the GPU modeling retreat
2017-03-21 Meisig, Johannes
Systems Biology of Molecular Networks
Modeling gene expression in spontaneous and perturbed differentiation
2017-03-14 Evangelista, Roberta
Theoretical Neuroscience
Bistable activation of CA3 interneurons can explain the generation of sharp wave-ripple oscillations
2017-03-07 Kremkow, Jens
Theoretical Neuroscience
What causes a cortical action potential, in vivo?
2017-02-28 El-Athman, Rukeia
Systems Biology of Cancer
Molecular Modelling of the Oligomeric Pore of the Tight Junction Protein Claudin-10b
2017-02-14 Knoop, Henning
Metabolic Networks
Metabolic modeling of cyanobacteria
2017-02-07 Klinger, Bertram
Systems Biology of Molecular Networks
The coffee ring effect
2017-01-31 Holzbecher, André
Theoretical Neuroscience
Memory - how we remember places, and why electrical synapses might play a role in that
2017-01-17 Herzel, Hanspeter (PI)
Molecular and Cellular Evolution
Modeling rhythms in cells, tissues, and organisms 2017-01-17_herzel.pdf
2017-01-10 Hesse, Janina
Computational Neurophysiology
Trace your favorite drawings - getting around copy rights with inkscape
2016-12-13 Gross, Torsten
Systems Biology of Molecular Networks
Finding patterns in perturbation data that reveal an underlying network
2016-11-29 Fuhr, Luise
Systems Biology of Cancer
Clock-genes and mitochondrial respiratory activity: Evidence of a reciprocal interplay.
2016-11-29 Bluethgen, Nils (PI)
Systems Biology of Molecular Networks
Noise in cancer
2016-11-22 Baranov, Olga
Research on Complex Systems
Real world networks
2016-11-08 Donoso, José R.
Theoretical Neuroscience
Microvision in cyanobacteria (http://dx.doi.org/10.7554/eLife.12620) 2016-11-08_donoso.pdf
2016-11-01 Benary, Manuela
Systems Biology of Molecular Networks
Project proposal
2016-10-25 Maier, Benjamin
Flockworks: A class of dynamic network models for face-to-face interactions
2016-10-18 Witzel, Franziska
Systems Biology of Molecular Networks
Oncogene-induced Senescence 2016-10-18_witzel.pdf
2016-10-11 Bordyugov, Grischa
Molecular and Cellular Evolution
Programming with closures for fun and profit 2016-10-11_bordyugov.pdf

If it is your turn at the ITB meeting, please prepare a short talk (15 min + 5 min discussion) that is related to your research (your own project or a very interesting finding of other groups). Please make sure that the video-projector and laptop are in place at 14:00. If you are scheduled for House 4 - the projector is already installed in the seminar room. If you are unable to give the talk at the date indicated, please find a replacement.

Titles for the talks should be sent until sunday to: Matthias König

Thank you for your effort to keep ITB a vital and exciting meeting point for theoretical and experimental biologists!

Name Group
Westermark, Pål (PI) Systems Biology of Aging and the Circadian
Wilmes, Katharina Computational Neurophysiology
Roemschied, Frederic Computational Neurophysiology
Chenkov, Nikolay Theoretical Neuroscience
Westermark, Stefanie Metabolic Networks
Lehmann, Robert Celldeg.com
Ruegen, Marco Metabolic Networks
Lueck, Sarah Systems Biology of Aging and the Circadian Clock
Knoop, Henning Metabolic Networks
Thaben, Paul Systems Biology of Aging and the Circadian Clock
Bordyugov, Grischa Molecular and Cellular Evolution
Zug, Roman Evolution of Organismic Systems
McColgan, Thomas Theoretical Neuroscience
Michalikova, Martina Theoretical Neuroscience
Fuhr, Luise Systems Biology of Cancer
Donoso, José R. Theoretical Neuroscience
Hesse, Janina Computational Neurophysiology
Ünal, Evrim Besray Systems Biology of Molecular Networks
Kremkow, Jens Theoretical Neuroscience
Abreu, Mónica Systems Biology of Cancer
Remme, Michiel Computational Neurophysiology and Neuroscience
Holzbecher, André Theoretical Neuroscience
Witzel, Franziska Systems Biology of Molecular Networks
Pett, Patrick Molecular and Cellular Evolution
Baranov, Olga Research on Complex Systems
Clara Jongen Research on Complex Systems
Rydenfelt, Mattias Systems Biology of Molecular Networks
Evangelista, Roberta Theoretical Neuroscience
Genov, Nikolai Systems Biology of Cancer
El-Athman, Rukeia Systems Biology of Cancer
Li, Yin Systems Biology of Cancer