ITB Meeting Schedule
Upcoming SpeakersPast Seminars
Organisation
Meeting Alumni
Upcoming Speakers
| Predicted Date [*] | Name | Group | Location |
|---|---|---|---|
| 2023-10-10 | König, Matthias (PI) | Systems Biology of Liver | |
| 2023-10-17 | Yalcin, Müge | Systems Biology of Cancer | |
| 2023-10-24 | Masserini, Stefano | Theoretical Neuroscience | |
| 2023-10-31 | Höper, Rune | Metabolic Networks | |
| 2023-11-07 | Bergerot, Clemence | Collective Information Processing | |
| 2023-11-14 | Kuokkanen, Paula | Theoretical Neuroscience | |
| 2023-11-21 | Schuppner, Rike-Benjamin | System Administration | |
| 2023-11-28 | Sevinchan, Yunus | Collective Information Processing | |
| 2023-12-05 | Schreiber, Susanne (PI) | Computational Neurophysiology | |
| 2023-12-12 | Astaburuaga, Rosario | Systems Biology of Molecular Networks | |
| 2023-12-19 | Govoni, Patrick | Collective Information Processing | |
| 2024-01-02 | Drangmeister, Moritz | Computational Neurophysiology | |
| 2024-01-09 | Komkova, Daria | Metabolic Networks | |
| 2024-01-16 | Pallasdies, Fabian | Computational Neurophysiology | |
| 2024-01-23 | Lecheval, Valentin | Collective Information Processing | |
| 2024-01-30 | Ananthasubramaniam, Bharath (PI) | Rhythmic Living Systems | |
| 2024-02-06 | Norton, Phillip | Computational Neurophysiology | |
| 2024-02-13 | Schmal, Christoph (PI) | Computational Chronobiology | |
| 2024-02-20 | Gowers, Robert | Computational Neurophysiology | |
| 2024-02-27 | Hurtado, Javier Marchena | Systems Biology of Molecular Networks | |
| 2024-03-05 | Mahraz, Behbood | Computational Neurophysiology | |
| 2024-03-12 | Steuer, Ralf (PI) | Metabolic Networks | |
| 2024-03-19 | Auer, Naomi | Theoretical Neuroscience | |
| 2024-03-26 | Niemeyer, Nelson | Computational Neurophysiology | |
| 2024-04-02 | Lemaire, Louisiane | Computational Neurophysiology | |
| 2024-04-09 | Schleimer, Jan-Hendrik | Computational Neurophysiology | |
| 2024-04-16 | Del Olmo, Marta | Molecular and Cellular Evolution | |
| 2024-04-23 | Karimian, Maryam | Collective Information Processing | |
| 2024-04-30 | Cano, Gaspar | Theoretical Neuroscience | |
| 2024-05-07 | Wilkins, Adams | ITB | |
| 2024-05-14 | Usatikova, Eleonora | Molecular and Cellular Evolution | |
| 2024-05-21 | Klinger, Bertram | Systems Biology of Molecular Networks | |
| 2024-05-28 | Grabe, Saskia | Molecular and Cellular Evolution | |
| 2024-06-04 | Bluethgen, Nils (PI) | Systems Biology of Molecular Networks | |
| 2024-06-11 | Pfeiffer, Paul | Computational Neurophysiology | |
| 2024-06-18 | Hammerstein, Peter (PI) | Evolution of Organismic Systems | |
| 2024-06-25 | Weerdmeester, Liz | Computational Neurophysiology | |
| 2024-07-02 | Romanczuk, Pawel (PI) | Collective Information Processing | |
| 2024-07-09 | Herzel, Hanspeter (PI) | Molecular and Cellular Evolution | |
| 2024-07-16 | Zheng, Yating | Collective Information Processing |
holidays package.
Holiday breaks like over Christmas and local Berlin holidays are not accounted for and can result in changes of the final date of your
presentation.
Past Seminars
| Date | Speaker | Title | Slides | |
|---|---|---|---|---|
| 2023-09-27 |
Zheng, Yating Collective Information Processing |
Collective shepherding | ||
| 2023-09-19 |
Herzel, Hanspeter (PI) Molecular and Cellular Evolution |
My 40 years with oscillators | ||
| 2023-09-12 |
Weerdmeester, Liz Computational Neurophysiology |
Fitting Recurrent Neural Networks to a database of electrophysiology recordings to prove the existence and characteristics of dynamical neuron types | ||
| 2023-09-05 |
Hammerstein, Peter (PI) Evolution of Organismic Systems |
A BIOLOGICAL EMPLOYMENT MODEL OF REPRODUCTIVE INEQUALITY | ||
| 2023-07-11 |
Pfeiffer, Paul Computational Neurophysiology |
Large scale analysis of neural excitability | ||
| 2023-07-04 |
Bluethgen, Nils (PI) Systems Biology of Molecular Networks |
Network Reconstruction: Then and Now | ||
| 2023-06-27 |
Grabe, Saskia Molecular and Cellular Evolution |
|||
| 2023-06-20 |
Romanczuk, Pawel (PI) Collective Information Processing |
Social dilemmas of sociality due to beneficial and costly contagion | ||
| 2023-06-13 |
Klinger, Bertram Systems Biology of Molecular Networks |
Mutagenesis screen to identify driver genes for AML in mice with ASXL1mut background | ||
| 2023-05-23 |
Wilkins, Adams ITB |
Why are the brains of domesticated mammals smaller than their wild forebear strains? | ||
| 2023-05-09 |
Del Olmo, Marta Molecular and Cellular Evolution |
Are circadian periods and amplitudes correlated? A new twist in the story | ||
| 2023-05-02 |
Schleimer, Jan-Hendrik Computational Neurophysiology |
Fast flapping flyers II: Should we model the development of a central pattern generator in Drosophila? | ||
| 2023-04-25 |
Lemaire, Louisiane Computational Neurophysiology |
Integrate-and-fire neuron with potassium dynamics capturing activity-mediated switches in firing regimes | ||
| 2023-04-18 |
Niemeyer, Nelson Computational Neurophysiology |
Fast flapping fliers: Modelling the Drosophila wing motor system | ||
| 2023-03-28 |
Auer, Naomi Theoretical Neuroscience |
Differences in population sparseness can explain different memory consolidation speeds | ||
| 2023-03-07 |
Mahraz, Behbood Computational Neurophysiology |
Slow Rhythmic Dynamic Induced by Extracellular Potassium Concentration | ||
| 2023-02-21 |
Gowers, Robert Computational Neurophysiology |
How neuronal morphology affects the network state via the excitability type | ||
| 2023-02-07 |
Norton, Phillip Computational Neurophysiology |
Neural optimization: Understanding trade-offs with Pareto theory | ||
| 2023-01-31 |
Ananthasubramaniam, Bharath (PI) Rhythmic Living Systems |
Cyclic Ordering with Feature Extraction (COFE) identifies circadian biomarkers from data without time labels | ||
| 2023-01-24 |
Lauterback, Elvira |
Health and Safety in the workplace | ||
| 2023-01-17 |
Komkova, Daria Metabolic Networks |
Model reduction of genome-scale metabolic models for the development of stoichiometrically correct kinetic models | ||
| 2023-01-10 |
Relógio, Angela (PI) |
A career in academic research: time matters! | ||
| 2022-12-13 |
Pallasdies, Fabian Computational Neurophysiology |
Studying computational models of jellyfish nervous systems regarding motor control, embodiment and evolution | ||
| 2022-12-06 |
Gutu, Nica |
How cells respond to DNA damage at single-cell level? | ||
| 2022-11-29 |
Kwon, Gino Systems Biology of Inflammation |
Genomic profiling upon T-cell stimulation in Autoimmune disease | ||
| 2022-11-22 |
Drangmeister, Moritz Computational Neurophysiology |
On the ground state statistics of a balanced network of homoclinic neurons in the bistable regime | ||
| 2022-11-15 |
Astaburuaga, Rosario Systems Biology of Molecular Networks |
What determines the fate of HNSCC cells after radiation therapy? | ||
| 2022-11-08 |
Petković, Marina |
Differential expression of the circadian clock network correlates with tumor progression in gliomas | ||
| 2022-11-01 |
Schmal, Christoph (PI) Computational Chronobiology |
The mammalian circadian clock: a network of coupled oscillators | ||
| 2022-10-25 |
Mohsen Raoufi |
Speed accuracy tradeoffs in spatial collective estimation: a swarm robotic implementation | ||
| 2022-10-18 |
Schuppner, Rike-Benjamin System Administration |
Your way around the ITB infrastructure | ||
| 2022-10-11 |
Kuokkanen, Paula Theoretical Neuroscience |
Inhibitory synaptic dynamics in the extracellular field potentials of the nucleus laminaris of the barn owl. | ||
| 2022-09-27 |
Bartashevich, Palina |
Collective anti-predator escape in fish schools | ||
| 2022-09-13 |
Höper, Rune Metabolic Networks |
Flux Balance Analysis of the cyanobacterium Synechocystis sp. PCC 6803 | ||
| 2022-09-06 |
König, Matthias (PI) Systems Biology of Liver |
None | ||
| 2022-07-12 |
Steuer, Ralf (PI) Metabolic Networks |
Green biotechnology and the fastest-growing cyanobacterium | ||
| 2022-07-05 |
Gomez, Luis |
Intermittent collective motion in sheep: temporal leaders and information flow | ||
| 2022-06-28 |
Weerdmeester, Liz Computational Neurophysiology |
Design Principles of Environmentally Robust Pacemaker Driven Excitable Cells | ||
| 2022-06-21 |
Hammerstein, Peter (PI) Evolution of Organismic Systems |
Evolution and the puzzle of cooperation | ||
| 2022-06-07 |
Bluethgen, Nils (PI) Systems Biology of Molecular Networks |
None | ||
| 2022-05-24 |
Herzel, Hanspeter (PI) Molecular and Cellular Evolution |
Why do we get up 90 min earlier if our clock runs 12 min faster? | ||
| 2022-05-17 |
Peidli, Stefan |
Not-so-single cell RNA-seq: cell-cell interactions from doublets | ||
| 2022-05-10 |
Malhan, Deeksha |
Transcriptome analysis of alternative splicing in clock disrupted cancer cells | ||
| 2022-05-03 |
Del Olmo, Marta Molecular and Cellular Evolution |
Inter-layer and inter-individual variability of circadian gene expression in human skin | ||
| 2022-04-26 |
Usatikova, Eleonora Molecular and Cellular Evolution |
Analysis of daily rhythmicity in activity of cancer-related pathways with a gene expression signature-based approach | ||
| 2022-04-19 |
Grzegorzewski, Jan |
The role of the CYP2D6 polymorphism on dextromethorphan pharmacokinetics: A physiological-based pharmacokinetics modeling approach. | ||
| 2022-04-12 |
Fischer, Matthias |
On tumoural growth and treatment under cellular dedifferentiation. | ||
| 2022-04-05 |
Aboumanify, Ouda |
|||
| 2022-03-22 |
Klinger, Bertram Systems Biology of Molecular Networks |
Using tap-seq to infer gene regulatory networks - a start | ||
| 2022-03-15 |
Cano, Gaspar Theoretical Neuroscience |
Memory replay and disinhibition mechanisms in sharp wave-ripples | ||
| 2022-03-01 |
Grabe, Saskia Molecular and Cellular Evolution |
Synergies of multiple zeitgebers tune entrainment | ||
| 2022-02-22 |
Schleimer, Jan-Hendrik Computational Neurophysiology |
Neuronal Excitability or Networks? | ||
| 2022-02-15 |
Sell, Thomas |
A look into phenotypic plasticity during colorectal cancer progression | ||
| 2022-02-08 |
Niemeyer, Nelson Computational Neurophysiology |
Electrical synapses desynchronize the Drosophila wing motor network | ||
| 2022-01-18 |
Mahraz, Behbood Computational Neurophysiology |
A PCA method for analysis of microelectrode array data on KCC2 cotransporter effect in the neuronal network level | ||
| 2022-01-11 |
Auer, Naomi Theoretical Neuroscience |
Could differences in population sparseness explain different memory consolidation speeds? | ||
| 2021-12-07 |
Hesse, Janina Computational Neurophysiology |
Chronotherapy in a dish: Modeling time-dependent toxicity of a cancer drug | ||
| 2021-11-23 |
Norton, Phillip Computational Neurophysiology |
Cortical control of vocal turn taking in zebra finches | ||
| 2021-11-16 |
Pallasdies, Fabian Computational Neurophysiology |
From Single Neurons to Behavior in Two Jellyfish Species | ||
| 2021-11-09 |
Wilkins, Adams ITB |
Charles Darwin's Mystery Illness: Using 21st century biology to solve a 19th century medical 'cold case' | ||
| 2021-11-02 |
Gomez, Luis |
The Role Of Speed Adaptation In Collective Motion | ||
| 2021-10-24 |
Schuppner, Rike-Benjamin System Administration |
If a computer crashes and no one is logged in to notice it, does IT make a sound? — Techsplaning the ITB infrastructure. | ||
| 2021-10-17 |
Ananthasubramaniam, Bharath (PI) Rhythmic Living Systems |
Difference of significance is not significance of the difference | ||
| 2021-10-12 |
Petković, Marina |
Investigating tumor evolution using allele-specific copy-number profiles from multi-region data | ||
| 2021-10-05 |
Schreiber, Susanne (PI) Computational Neurophysiology |
Action potential dynamics: how cellular properties matter for nervous system function | ||
| 2021-09-28 |
Basti, Alireza Systems Biology of Cancer |
Core-clock genes regulate proliferation and migration in colorectal cancer cells: a reciprocal interplay with MACC1 | ||
| 2021-09-21 |
Astaburuaga, Rosario Systems Biology of Molecular Networks |
Complement activation induces excessive T cell cytotoxicity in severe COVID-19 | ||
| 2021-09-14 |
Yalcin, Müge Systems Biology of Cancer |
The role of circadian clock phenotype in cellular pathways associated with cancer and neurodegeneration | ||
| 2021-09-07 |
Mohsen Raoufi |
Speed-accuracy trade-off in spatial collective decision making | ||
| 2021-08-24 |
Burt, Phillipp Systems Biology of Inflammation |
Data-driven modeling of T cell dynamics in acute and chronic inflammation | ||
| 2021-06-22 |
Contreras, Susana Computational Neurophysiology |
Simplifying complicated neuronal models | ||
| 2021-06-15 |
Kuokkanen, Paula Theoretical Neuroscience |
Predicting click-elicited single auditory unit contributions to EEG in the barn owl | ||
| 2021-06-08 |
Thurley, Kevin (PI) Systems Biology of Inflammation |
Epigenetic auto-stabilization - evidence for a new network motif in the control of Th cell lineage identity. | ||
| 2021-06-01 |
Schieferstein, Natalie |
Approximating transient dynamics of hippocampal ripple oscillations in an inhibitory network model | ||
| 2021-05-25 |
Poel, Winnie Collective Information Processing |
TBA | ||
| 2021-05-18 |
Pfeiffer, Paul Computational Neurophysiology |
Capacitance clamp - artificial capacitance in biological neurons | ||
| 2021-05-03 |
König, Matthias (PI) Systems Biology of Liver |
Physiologically based model of the indocyanine green based liver function tests | ||
| 2021-04-27 |
Steuer, Ralf (PI) Metabolic Networks |
Eating the Sun: the path from single cell growth to productive ecosystems | ||
| 2021-04-20 |
Gomez, Luis |
Information spread enhanced by criticality in high-responsive groups of fish | ||
| 2021-04-13 |
Weerdmeester, Liz Computational Neurophysiology |
Energy vs robustness: a trade-off? | ||
| 2021-04-06 |
Schmal, Christoph (PI) Computational Chronobiology |
An Integrative Omics Approach Reveals Post-transcriptional Mechanisms Underlying Circadian Temperature Compensation | ||
| 2021-03-30 |
Hammerstein, Peter (PI) Evolution of Organismic Systems |
A striking 'pandemic' | ||
| 2021-03-16 |
Relógio, Angela (PI) |
Circadian cancer metabolism. | ||
| 2021-03-09 |
Brunner, Patrick Systems Biology of Inflammation |
Spatial modeling of inflammation | ||
| 2021-03-02 |
Zhao, Yinong |
Self-organization of self-propelled particles with alignment -- Contagion process influenced by the spatial structure | ||
| 2021-02-23 |
Bluethgen, Nils (PI) Systems Biology of Molecular Networks |
Signalling and the organisation of the epithelium and epithelial tumours. Lessons learned from single cell studies. | ||
| 2021-02-16 |
Peidli, Stefan |
Temporal Single Cell Analysis with RNA velocity | ||
| 2021-02-09 |
Kwon, Gino Systems Biology of Inflammation |
Dissecting the heterogeneity of single cell RNA expression. | ||
| 2021-02-02 |
Malhan, Deeksha |
Bone healing: cellular and molecular insight | ||
| 2021-01-26 |
Del Olmo, Marta Molecular and Cellular Evolution |
Nonlinear phenomena in models of the circadian clock | ||
| 2021-01-19 |
Fischer, Matthias |
Maintaining and losing homoeostasis in hierarchical tissues | ||
| 2021-01-12 |
Grzegorzewski, Jan |
PK-DB: A Pharmacokinetics Database for Individualized and Stratified Computational Modelling | ||
| 2020-12-15 |
Aboumanify, Ouda |
Circadian genes and sports performance | ||
| 2020-12-08 |
Klinger, Bertram Systems Biology of Molecular Networks |
Speed2 | ||
| 2020-12-01 |
Schleimer, Jan-Hendrik Computational Neurophysiology |
Understanding excitability-switches in one dimension too much | ||
| 2020-11-24 |
Dorel, Mathurin Systems Biology of Molecular Networks |
Reverse engineering signalling networks in neuroblastoma cell lines | ||
| 2020-11-17 |
Mahraz, Behbood Computational Neurophysiology |
KCC2 cotransporter plays a role in balancing potassium in the extracellular space of excitatory synapses | ||
| 2020-11-10 |
Herzel, Hanspeter (PI) Molecular and Cellular Evolution |
GC content of the genome | ||
| 2020-11-03 |
Gross, Torsten Systems Biology of Molecular Networks |
Is robustness of MAPK signalling a result of integral feedback control? | ||
| 2020-10-27 |
Sell, Thomas |
CyTOF | ||
| 2020-10-20 |
Hesse, Janina Computational Neurophysiology |
Circadian genes and sports performance: Prediction of optimal training times | ||
| 2020-06-24 |
Wilkins, Adams ITB |
In domesticating animals, what is the first step: getting reduced reactive aggression or reduced fear? | ||
| 2020-06-17 |
Ananthasubramaniam, Bharath (PI) Rhythmic Living Systems |
Amplitude Effects Allow Short Jet Lags and Large Seasonal Phase Shifts in Minimal Clock Models | ||
| 2020-06-09 |
Basti, Alireza Systems Biology of Cancer |
The role of circadian clock in colorectal cancer: insights from in vitro and in vivo approaches | ||
| 2020-06-02 |
Yalcin, Müge Systems Biology of Cancer |
Meta-analysis of circadian rhythms in an in vitro model of colorectal cancer | ||
| 2020-05-26 |
Astaburuaga, Rosario Systems Biology of Molecular Networks |
Signaling pathways governing cell fate decisions upon radiation | ||
| 2020-05-19 |
Upadhyay, Abhishek Molecular and Cellular Evolution |
Modelling multiple random phosphorylations in Neurospora clock is not rocket science! | ||
| 2020-05-23 |
Gustav, Geissler Systems Biology of Inflammation |
Systems Biology of Inflammation | ||
| 2020-02-25 |
Schuppner, Rike-Benjamin System Administration |
ITB IT infrastructure & frequently asked questions | ||
| 2020-02-18 |
Burt, Phillipp Systems Biology of Inflammation |
Data-driven modeling of T helper cell responses | ||
| 2020-02-11 |
D'Albis, Tiziano Theoretical Neuroscience |
Recurrent amplification of grid-cell activity | ||
| 2020-02-04 |
Contreras, Susana Computational Neurophysiology |
Effects of the extracellular (potassium) cocktail on neuronal activity | ||
| 2020-01-28 |
Kuokkanen, Paula Theoretical Neuroscience |
From Single Cells to Far-Field Potentials in the Auditory Brainstem | ||
| 2020-01-21 |
Thurley, Kevin (PI) Systems Biology of Inflammation |
Principles for circadian orchestration of metabolic pathways | ||
| 2020-01-14 |
Schieferstein, Natalie |
Mechanisms of ripple oscillations and their role in memory consolidation | ||
| 2020-01-07 |
Rose, Pia Computational Neurophysiology |
The influence of sodium channel parameters on the cardiac action potential | ||
| 2019-12-17 |
Poel, Winnie Collective Information Processing |
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| 2019-12-10 |
Pfeiffer, Paul Computational Neurophysiology |
Capacitance clamp - artificial capacitance in biological neurons | ||
| 2019-12-03 |
König, Matthias (PI) Systems Biology of Liver |
A reproducible and extensible model of whole-body glucose metabolism - A Progress report | ||
| 2019-11-26 |
Steuer, Ralf (PI) Metabolic Networks |
None | ||
| 2019-11-19 |
Raghavendra Gadagkar (PI) |
Direct Fitness Options for Workers in the Indian Paper Wasp Ropalidia marginata | ||
| 2019-11-12 |
Romanczuk, Pawel (PI) Collective Information Processing |
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| 2019-11-05 |
Schmal, Christoph (PI) Computational Chronobiology |
Circadian entrainment across seasons: lessons from a red bread mold | ||
| 2019-10-15 |
Reifenstein, Eric Computational Neurophysiology |
The benefit of phase precession for sequence learning | ||
| 2019-10-08 |
Meisig, Johannes Systems Biology of Molecular Networks |
Using Slam-seq to characterize RNA processing rates globally. | ||
| 2019-10-01 |
Bluethgen, Nils (PI) Systems Biology of Molecular Networks |
Dissecting Colon Cancer, Cell By Cell | ||
| 2019-09-24 |
Relógio, Angela (PI) |
A role for the circadian clock in metastasis: insights from a zebrafish model. | ||
| 2019-09-17 |
Li, Yin Systems Biology of Cancer |
The bidirectional interplay between the circadian clock and the TGFβ/SMAD4 pathway modulates metastasis and drug response in pancreatic cancer. | ||
| 2019-09-10 |
Del Olmo, Marta Molecular and Cellular Evolution |
Modelling Circadian Redox Oscillations | ||
| 2019-09-03 |
El-Athman, Rukeia Systems Biology of Cancer |
A Landscape of Circadian and Ultradian Splicing Events in Mammalian Tissues | ||
| 2019-07-09 |
Grzegorzewski, Jan |
A Pharmacokinetics Database for Individualized and Stratified Computational Modelling | ||
| 2019-07-02 |
Klinger, Bertram Systems Biology of Molecular Networks |
Mass-spec methods for phospho-protein detection | ||
| 2019-06-25 |
Mahraz, Behbood Computational Neurophysiology |
Activity-Induced Changes in Ion Concentrations Switch Cellular Dynamics in Favor of the Brain's Rhythmic Activities (A Fast Slow Bifurcation Analysis) | ||
| 2019-06-18 |
Herzel, Hanspeter (PI) Molecular and Cellular Evolution |
Nonlinear dynamics of the voice | ||
| 2019-06-04 |
Gross, Torsten Systems Biology of Molecular Networks |
Robust network inference using response logic | ||
| 2019-05-28 |
Clara Jongen Research on Complex Systems |
Context specific role of airports in global disease dynamics | ||
| 2019-05-21 |
König, Matthias (PI) Systems Biology of Liver |
Reproducible research | ||
| 2019-05-14 |
Sell, Thomas |
Signalling cell by cell with mass cytometry | ||
| 2019-05-07 |
Benary, Manuela Systems Biology of Molecular Networks |
Precision oncology using big data – How to predict relevant targets and therapies? | ||
| 2019-04-30 |
Pett, Patrick Molecular and Cellular Evolution |
Defense tissue specific circadian clock | ||
| 2019-04-23 |
Sojo, Victor |
1+1=3: Membranes, proteins, and the intertwining branches of the Tree of Life | ||
| 2019-04-16 |
Lauterbach, Elvira & Winkelhöfer Karin |
Security information and instructions | ||
| 2019-04-02 |
Schreiber, Susanne (PI) Computational Neurophysiology |
Synchronization with a new type of spike | ||
| 2019-03-24 |
Carrillo-Bustamante, Paola |
How can we understand the transmission and evolution of malaria? Insights from an in-silico individual-based model | ||
| 2019-03-12 |
Ananthasubramaniam, Bharath (PI) Rhythmic Living Systems |
Ultradian rhythms in the transcriptome of Neurospora crassa | http://itb.biologie.hu-berlin.de/~bharath/ | |
| 2019-03-05 |
Astaburuaga, Rosario Systems Biology of Molecular Networks |
Mathematical modeling of lysosomal ion homeostasis | ||
| 2019-02-26 |
Uhlitz, Florian Systems Biology of Molecular Networks |
Single Cell RNA-Seq of Colorectal Cancer Organoids | ||
| 2019-02-19 |
Basti, Alireza Systems Biology of Cancer |
In vivo and in vitro investigation of the circadian clock in human colorectal cancer | ||
| 2019-02-12 |
Upadhyay, Abhishek Molecular and Cellular Evolution |
A degradation switch enables rhythm in a Neurospora clock model | ||
| 2019-02-05 |
Klamser, Pascal Collective Information Processing |
Uncommon Risk-Behavior Evolution Due to Size-Selective Harvesting in Zebrafish | ||
| 2019-01-29 |
Schuppner, Rike-Benjamin System Administration |
Frequently asked questions | https://itbgit.biologie.hu-berlin.de/schuppner/itb-infrastructure-2019/blob/master/ITB%20Meeting%202019.pdf | |
| 2019-01-22 |
Faizi, Marjan Metabolic Networks |
Modeling a self-adapting system of phototrophic growth | ||
| 2019-01-15 |
D'Albis, Tiziano Theoretical Neuroscience |
The origin of grid-cell patterns | ||
| 2019-01-08 |
Schieferstein, Natalie |
Mechanisms of phase precession in the hippocampal formation | ||
| 2018-12-11 |
Genov, Nikolai Systems Biology of Cancer |
Time-dependent Isoform Expression Changes | ||
| 2018-12-04 |
Kuokkanen, Paula Theoretical Neuroscience |
From single cells to extracellular field potentials and EEG | ||
| 2018-11-27 |
Burt, Phillipp Systems Biology of Inflammation |
Response-time modeling of T helper cell differentiation | ||
| 2018-11-20 |
Thurley, Kevin (PI) Systems Biology of Inflammation |
Modeling cell-cell communication dynamics in inflammatory responses | ||
| 2018-11-13 |
Contreras, Susana Computational Neurophysiology |
An activity-induced transition in single-cell spiking dynamics | ||
| 2018-11-06 |
Rose, Pia Computational Neurophysiology |
Neurobiology without neurons | ||
| 2018-10-30 |
Romanczuk, Pawel (PI) Collective Information Processing |
Less is more - Limited attention facilitates collective migration in complex environments | ||
| 2018-10-23 |
Pfeiffer, Paul Computational Neurophysiology |
Short term memory - Bistable neurons and reverberatory networks | ||
| 2018-10-16 |
König, Matthias (PI) Systems Biology of Liver |
Modelling liver function tests - LiMAx | ||
| 2018-10-09 |
Steuer, Ralf (PI) Metabolic Networks |
Modelling Phototrophic Growth | ||
| 2018-10-02 |
Carlos Aguilar (PI) |
Mapping the fungal web: Ecosystem functions to inspire human-made networks | ||
| 2018-09-18 |
Schmal, Christoph (PI) Computational Chronobiology |
Dissociation of Intracellular Feedback Loops in the Mammalian Circadian Clock | ||
| 2018-09-11 |
Rydenfelt, Mattias Systems Biology of Molecular Networks |
None | ||
| 2018-07-17 |
Hammerstein, Peter (PI) Evolution of Organismic Systems |
Celebrating the end of the semester with a look at Australian outback adventures | ||
| 2018-07-10 |
Winkelhöfer, Karin |
Berlin waste water management | ||
| 2018-07-03 |
Reifenstein, Eric Computational Neurophysiology |
Neuronal mechanisms of sequence learning | ||
| 2018-06-26 |
Genov, Nikolai Systems Biology of Cancer |
|||
| 2018-06-19 |
Evangelista, Roberta Theoretical Neuroscience |
A 3-populations spiking model for the generation of hippocampal sharp wave-ripple oscillations | ||
| 2018-06-12 |
Meisig, Johannes Systems Biology of Molecular Networks |
Reconstructing gene regulatory networks in stem cells | ||
| 2018-06-05 |
Bluethgen, Nils (PI) Systems Biology of Molecular Networks |
Colon cancer - cell by cell | ||
| 2018-05-28 |
Li, Yin Systems Biology of Cancer |
Characterization of circadian clock in mammalian cancer cells | ||
| 2018-05-21 |
Del Olmo, Marta Molecular and Cellular Evolution |
Circadian redox system | ||
| 2018-05-15 |
El-Athman, Rukeia Systems Biology of Cancer |
Analysis of the circadian splicosome | ||
| 2018-05-08 |
Grzegorzewski, Jan |
Virus Classification by Pattern Recognition applied on Peptide-Virus Interactions | ||
| 2018-04-24 |
Klinger, Bertram Systems Biology of Molecular Networks |
Studying oncogenic effects of RAS | ||
| 2018-04-17 |
Holzbecher, André Theoretical Neuroscience |
Interneuronal gap junctions increase the synchrony of hippocampal ripple oscillations | ||
| 2018-03-27 |
Relógio, Angela (PI) |
A brief history of time | ||
| 2018-03-20 |
Herzel, Hanspeter (PI) Molecular and Cellular Evolution |
The Choroid Plexus is an Important Circadian Clock Component | ||
| 2018-03-13 |
Schleimer, Jan-Hendrik Computational Neurophysiology |
It's: Monty Python's Flying Circuit | https://github.com/matthiaskoenig/itbmeeting/raw/master/slides/2018-03-13_schleimer.pdf | |
| 2018-03-06 |
Gross, Torsten Systems Biology of Molecular Networks |
A signalling network model predicts differential drug response of PIK3 mutants in a colon cancer cell line. | wiki/members/grosstor | |
| 2018-02-27 |
König, Matthias (PI) Systems Biology of Liver |
A Quick Introduction to Version Control with Git | ||
| 2018-02-20 |
Clara Jongen Research on Complex Systems |
Defining the scope: A context specific approach to identifying key airports during a pandemic. | ||
| 2018-02-13 |
Sell, Thomas |
What is mass cytometry? | ||
| 2018-01-30 |
Witzel, Franziska Systems Biology of Molecular Networks |
Integral feedback control in Erk1/2 signalling | 2018-01-30_witzel.pdf | |
| 2018-01-23 |
Wilkins, Adams ITB |
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| 2018-01-16 |
Upadhyay, Abhishek Molecular and Cellular Evolution |
Mathematical modeling of circadian clock in Neurospora crassa | ||
| 2018-01-09 |
Obermayer, Benedikt Bioinformatics Core Unit |
Global characterization of post-transcriptional gene regulation at the onset of neuronal differentiation | ||
| 2017-12-12 |
Uhlitz, Florian Systems Biology of Molecular Networks |
Single cell RNAseq of colorectal cancer | ||
| 2017-12-05 |
Basti, Alireza Systems Biology of Cancer |
Gene editing via CRISPR/CAS9 | ||
| 2017-11-28 |
Ünal, Evrim Besray Systems Biology of Molecular Networks |
Systems level expression correlation of Ras-like GTPase regulators and dysregulation in cancer. | ||
| 2017-11-21 |
Ananthasubramaniam, Bharath (PI) Rhythmic Living Systems |
BodyTime: A new diagnostic tool to assess the internal clock | ||
| 2017-11-14 |
Schuppner, Rike-Benjamin System Administration |
Technical Depth - Computers at the ITB | http://docs.itb.pri/TechnicalDepth/assets/player/KeynoteDHTMLPlayer.html#1 | |
| 2017-11-07 |
Klamser, Pascal Collective Information Processing |
Collective Performance in Presence of a Predator: An inhomogeneous, local field. | ||
| 2017-10-24 |
Faizi, Marjan Metabolic Networks |
Cyanobacterial growth with intrinsic feedback | ||
| 2017-10-17 |
Schieferstein, Natalie |
Mechanisms of phase precession in the hippocampal formation. | ||
| 2017-10-10 |
D'Albis, Tiziano Theoretical Neuroscience |
The origin of grid-cell patterns. | ||
| 2017-09-26 |
Kuokkanen, Paula Theoretical Neuroscience |
Decomposing the neurophonic in the NL of the Barn Owl. | ||
| 2017-09-19 |
Contreras, Susana Computational Neurophysiology |
The wonderlust gene | ||
| 2017-09-05 |
Rose, Pia Computational Neurophysiology |
The influence of temperature on neuronal processing | ||
| 2017-07-18 |
Pfeiffer, Paul Computational Neurophysiology |
Test-driven development | ||
| 2017-07-11 |
König, Matthias (PI) Systems Biology of Liver |
Computational modeling of liver function tests: Why you need more coffee when you smoke | ||
| 2017-07-04 |
Romanczuk, Pawel (PI) Collective Information Processing |
Collective Information Processing: How critical is it to be critical? | ||
| 2017-06-27 |
Karin Winklhöfer und Elvira Lauterbach |
ITB Symposium Organization Meeting | ||
| 2017-06-20 |
Steuer, Ralf (PI) Metabolic Networks |
The protein economy of growth: How to multiply yourself in seven steps. | ||
| 2017-06-13 |
Schreiber, Susanne (PI) Computational Neurophysiology |
Cold-induced silencing of neuronal activity | ||
| 2017-06-06 |
Schmal, Christoph (PI) Computational Chronobiology |
Mammalian circadian clock - Network of coupled oscillators | ||
| 2017-05-30 |
Rydenfelt, Mattias Systems Biology of Molecular Networks |
Drug sensitivity in cancer cell lines | ||
| 2017-05-23 |
Remme, Michiel Computational Neurophysiology and Neuroscience |
The energetic cost of the brain | ||
| 2017-05-16 |
Schleimer, Jan-Hendrik Computational Neurophysiology |
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| 2017-05-09 |
Abreu, Mónica Systems Biology of Cancer |
Circadian analysis of the immune system | ||
| 2017-05-02 |
Reifenstein, Eric Computational Neurophysiology |
Sequence learning in rats and humans | ||
| 2017-04-25 |
Michalikova, Martina Theoretical Neuroscience |
Post-journal utopia & how to move there faster. | ||
| 2017-04-04 |
Genov, Nikolai Systems Biology of Cancer |
Ultradian rhythms are evolutionary more conserved and play key roles in vital cellular functions. | ||
| 2017-03-28 |
McColgan, Thomas Theoretical Neuroscience |
Report of the GPU modeling retreat | ||
| 2017-03-21 |
Meisig, Johannes Systems Biology of Molecular Networks |
Modeling gene expression in spontaneous and perturbed differentiation | ||
| 2017-03-14 |
Evangelista, Roberta Theoretical Neuroscience |
Bistable activation of CA3 interneurons can explain the generation of sharp wave-ripple oscillations | ||
| 2017-03-07 |
Kremkow, Jens Theoretical Neuroscience |
What causes a cortical action potential, in vivo? | ||
| 2017-02-28 |
El-Athman, Rukeia Systems Biology of Cancer |
Molecular Modelling of the Oligomeric Pore of the Tight Junction Protein Claudin-10b | ||
| 2017-02-14 |
Knoop, Henning Metabolic Networks |
Metabolic modeling of cyanobacteria | ||
| 2017-02-07 |
Klinger, Bertram Systems Biology of Molecular Networks |
The coffee ring effect | ||
| 2017-01-31 |
Holzbecher, André Theoretical Neuroscience |
Memory - how we remember places, and why electrical synapses might play a role in that | ||
| 2017-01-17 |
Herzel, Hanspeter (PI) Molecular and Cellular Evolution |
Modeling rhythms in cells, tissues, and organisms | 2017-01-17_herzel.pdf | |
| 2017-01-10 |
Hesse, Janina Computational Neurophysiology |
Trace your favorite drawings - getting around copy rights with inkscape | ||
| 2016-12-13 |
Gross, Torsten Systems Biology of Molecular Networks |
Finding patterns in perturbation data that reveal an underlying network | ||
| 2016-11-29 |
Fuhr, Luise Systems Biology of Cancer |
Clock-genes and mitochondrial respiratory activity: Evidence of a reciprocal interplay. | ||
| 2016-11-29 |
Bluethgen, Nils (PI) Systems Biology of Molecular Networks |
Noise in cancer | ||
| 2016-11-22 |
Baranov, Olga Research on Complex Systems |
Real world networks | ||
| 2016-11-08 |
Donoso, José R. Theoretical Neuroscience |
Microvision in cyanobacteria (http://dx.doi.org/10.7554/eLife.12620) | 2016-11-08_donoso.pdf | |
| 2016-11-01 |
Benary, Manuela Systems Biology of Molecular Networks |
Project proposal | ||
| 2016-10-25 |
Maier, Benjamin |
Flockworks: A class of dynamic network models for face-to-face interactions | ||
| 2016-10-18 |
Witzel, Franziska Systems Biology of Molecular Networks |
Oncogene-induced Senescence | 2016-10-18_witzel.pdf | |
| 2016-10-11 |
Bordyugov, Grischa Molecular and Cellular Evolution |
Programming with closures for fun and profit | 2016-10-11_bordyugov.pdf |
Organisation
If it is your turn at the ITB meeting, please prepare a short talk (15 min + 5 min discussion) that is related to your research (your own project or a very interesting finding of other groups). Please make sure that the video-projector and laptop are in place at 14:00. If you are scheduled for House 4 - the projector is already installed in the seminar room. If you are unable to give the talk at the date indicated, please find a replacement.
Titles for the talks should be sent until Monday 12PM to: Bharath Ananthasubramaniam
Thank you for your effort to keep ITB a vital and exciting meeting point for theoretical and experimental biologists!
Meeting Alumni
| Name | Group |
|---|---|
| Basti, Alireza | Systems Biology of Cancer |
| Hesse, Janina | Systems Biology of Cancer |
| Poel, Winnie | Collective Information Processing |
| Kwon, Gino | Systems Biology of Inflammation |
| Burt, Phillipp | Systems Biology of Inflammation |
| Brunner, Patrick | Systems Biology of Inflammation |
| Thurley, Kevin (PI) | Systems Biology of Inflammation |
| Contreras, Susana | Computational Neurophysiology |
| Westermark, Pål (PI) | Systems Biology of Aging and the Circadian |
| Wilmes, Katharina | Computational Neurophysiology |
| Roemschied, Frederic | Computational Neurophysiology |
| Chenkov, Nikolay | Theoretical Neuroscience |
| Westermark, Stefanie | Metabolic Networks |
| Lehmann, Robert | Celldeg.com |
| Ruegen, Marco | Metabolic Networks |
| Lueck, Sarah | Systems Biology of Aging and the Circadian Clock |
| Knoop, Henning | Metabolic Networks |
| Thaben, Paul | Systems Biology of Aging and the Circadian Clock |
| Bordyugov, Grischa | Molecular and Cellular Evolution |
| Zug, Roman | Evolution of Organismic Systems |
| McColgan, Thomas | Theoretical Neuroscience |
| Michalikova, Martina | Theoretical Neuroscience |
| Fuhr, Luise | Systems Biology of Cancer |
| Donoso, José R. | Theoretical Neuroscience |
| Hesse, Janina | Computational Neurophysiology |
| Ünal, Evrim Besray | Systems Biology of Molecular Networks |
| Kremkow, Jens | Theoretical Neuroscience |
| Abreu, Mónica | Systems Biology of Cancer |
| Remme, Michiel | Computational Neurophysiology and Neuroscience |
| Holzbecher, André | Theoretical Neuroscience |
| Witzel, Franziska | Systems Biology of Molecular Networks |
| Pett, Patrick | Molecular and Cellular Evolution |
| Baranov, Olga | Research on Complex Systems |
| Clara Jongen | Research on Complex Systems |
| Rydenfelt, Mattias | Systems Biology of Molecular Networks |
| Evangelista, Roberta | Theoretical Neuroscience |
| Genov, Nikolai | Systems Biology of Cancer |
| El-Athman, Rukeia | Systems Biology of Cancer |
| Li, Yin | Systems Biology of Cancer |
| Faizi, Marjan | Metabolic Networks |
| Uhlitz, Florian | Systems Biology of Molecular Networks |
| Benary, Manuela | Systems Biology of Molecular Networks |
| Rose, Pia | Computational Neurophysiology |
| Reifenstein, Eric | Computational Neurophysiology |
| D'Albis, Tiziano | Theoretical Neuroscience |
| Meisig, Johannes | Systems Biology of Molecular Networks |
| Klamser, Pascal | Collective Information Processing |
| Borek, Zuzanna | Systems Biology of Inflammation |
| Gustav, Geissler | Systems Biology of Inflammation |
| Upadhyay, Abhishek | Molecular and Cellular Evolution |
| Dorel, Mathurin | Systems Biology of Molecular Networks |
| Gross, Torsten | Systems Biology of Molecular Networks |